Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3222

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3221 and Psest_3222 are separated by 106 nucleotidesPsest_3222 and Psest_3223 are separated by 68 nucleotides Psest_3221: Psest_3221 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 3,393,355 to 3,395,040 _3221 Psest_3222: Psest_3222 - Putative threonine efflux protein, at 3,395,147 to 3,395,776 _3222 Psest_3223: Psest_3223 - Lactate dehydrogenase and related dehydrogenases, at 3,395,845 to 3,396,804 _3223 Position (kb) 3395 3396Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3394.241 kb on + strand, within Psest_3221at 3394.266 kb on - strand, within Psest_3221at 3394.298 kb on + strand, within Psest_3221at 3394.298 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.346 kb on + strand, within Psest_3221at 3394.347 kb on - strand, within Psest_3221at 3394.347 kb on - strand, within Psest_3221at 3394.347 kb on - strand, within Psest_3221at 3394.347 kb on - strand, within Psest_3221at 3394.347 kb on - strand, within Psest_3221at 3394.347 kb on - strand, within Psest_3221at 3394.347 kb on - strand, within Psest_3221at 3394.442 kb on + strand, within Psest_3221at 3394.442 kb on + strand, within Psest_3221at 3394.442 kb on + strand, within Psest_3221at 3394.442 kb on + strand, within Psest_3221at 3394.443 kb on - strand, within Psest_3221at 3394.443 kb on - strand, within Psest_3221at 3394.478 kb on + strand, within Psest_3221at 3394.478 kb on + strand, within Psest_3221at 3394.478 kb on + strand, within Psest_3221at 3394.478 kb on + strand, within Psest_3221at 3394.478 kb on + strand, within Psest_3221at 3394.478 kb on + strand, within Psest_3221at 3394.478 kb on + strand, within Psest_3221at 3394.478 kb on + strand, within Psest_3221at 3394.479 kb on - strand, within Psest_3221at 3394.523 kb on + strand, within Psest_3221at 3394.523 kb on + strand, within Psest_3221at 3394.523 kb on + strand, within Psest_3221at 3394.524 kb on - strand, within Psest_3221at 3394.527 kb on + strand, within Psest_3221at 3394.527 kb on + strand, within Psest_3221at 3394.527 kb on + strand, within Psest_3221at 3394.527 kb on + strand, within Psest_3221at 3394.528 kb on - strand, within Psest_3221at 3394.528 kb on - strand, within Psest_3221at 3394.528 kb on - strand, within Psest_3221at 3394.528 kb on - strand, within Psest_3221at 3394.528 kb on - strand, within Psest_3221at 3394.655 kb on + strand, within Psest_3221at 3394.656 kb on - strand, within Psest_3221at 3394.715 kb on + strand, within Psest_3221at 3394.715 kb on + strand, within Psest_3221at 3394.715 kb on + strand, within Psest_3221at 3394.716 kb on - strand, within Psest_3221at 3394.716 kb on - strand, within Psest_3221at 3394.716 kb on - strand, within Psest_3221at 3394.752 kb on + strand, within Psest_3221at 3394.752 kb on + strand, within Psest_3221at 3394.752 kb on + strand, within Psest_3221at 3394.752 kb on + strand, within Psest_3221at 3394.752 kb on + strand, within Psest_3221at 3394.911 kb on - strandat 3394.928 kb on + strandat 3395.000 kb on + strandat 3395.000 kb on + strandat 3395.069 kb on + strandat 3395.069 kb on + strandat 3395.069 kb on + strandat 3395.069 kb on + strandat 3395.070 kb on - strandat 3395.070 kb on - strandat 3395.070 kb on - strandat 3395.070 kb on - strandat 3395.070 kb on - strandat 3395.070 kb on - strandat 3395.082 kb on - strandat 3395.082 kb on - strandat 3395.310 kb on + strand, within Psest_3222at 3395.523 kb on + strand, within Psest_3222at 3395.523 kb on + strand, within Psest_3222at 3395.523 kb on + strand, within Psest_3222at 3395.736 kb on - strandat 3395.736 kb on - strandat 3395.758 kb on + strandat 3395.759 kb on - strandat 3395.772 kb on + strandat 3395.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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3,394,241 + Psest_3221 0.53 -0.7
3,394,266 - Psest_3221 0.54 -1.5
3,394,298 + Psest_3221 0.56 +1.3
3,394,298 + Psest_3221 0.56 -0.6
3,394,346 + Psest_3221 0.59 +0.5
3,394,346 + Psest_3221 0.59 +1.1
3,394,346 + Psest_3221 0.59 -0.2
3,394,346 + Psest_3221 0.59 -0.1
3,394,346 + Psest_3221 0.59 -0.4
3,394,346 + Psest_3221 0.59 +0.9
3,394,346 + Psest_3221 0.59 -0.1
3,394,346 + Psest_3221 0.59 -0.1
3,394,346 + Psest_3221 0.59 -0.0
3,394,347 - Psest_3221 0.59 +0.6
3,394,347 - Psest_3221 0.59 +0.6
3,394,347 - Psest_3221 0.59 +2.9
3,394,347 - Psest_3221 0.59 +0.2
3,394,347 - Psest_3221 0.59 -0.9
3,394,347 - Psest_3221 0.59 -0.1
3,394,347 - Psest_3221 0.59 +2.7
3,394,442 + Psest_3221 0.64 +0.4
3,394,442 + Psest_3221 0.64 +0.2
3,394,442 + Psest_3221 0.64 +0.6
3,394,442 + Psest_3221 0.64 +1.1
3,394,443 - Psest_3221 0.65 +1.5
3,394,443 - Psest_3221 0.65 -0.9
3,394,478 + Psest_3221 0.67 +0.5
3,394,478 + Psest_3221 0.67 +0.3
3,394,478 + Psest_3221 0.67 -1.1
3,394,478 + Psest_3221 0.67 +0.1
3,394,478 + Psest_3221 0.67 +0.1
3,394,478 + Psest_3221 0.67 -1.1
3,394,478 + Psest_3221 0.67 -1.2
3,394,478 + Psest_3221 0.67 +0.1
3,394,479 - Psest_3221 0.67 -0.2
3,394,523 + Psest_3221 0.69 -0.7
3,394,523 + Psest_3221 0.69 +1.3
3,394,523 + Psest_3221 0.69 -1.1
3,394,524 - Psest_3221 0.69 +1.1
3,394,527 + Psest_3221 0.70 -1.0
3,394,527 + Psest_3221 0.70 -0.4
3,394,527 + Psest_3221 0.70 -1.3
3,394,527 + Psest_3221 0.70 +0.2
3,394,528 - Psest_3221 0.70 -0.7
3,394,528 - Psest_3221 0.70 +1.2
3,394,528 - Psest_3221 0.70 +0.6
3,394,528 - Psest_3221 0.70 +0.1
3,394,528 - Psest_3221 0.70 -0.4
3,394,655 + Psest_3221 0.77 -0.0
3,394,656 - Psest_3221 0.77 -0.8
3,394,715 + Psest_3221 0.81 -1.1
3,394,715 + Psest_3221 0.81 +0.9
3,394,715 + Psest_3221 0.81 -0.2
3,394,716 - Psest_3221 0.81 -0.1
3,394,716 - Psest_3221 0.81 +0.6
3,394,716 - Psest_3221 0.81 -0.8
3,394,752 + Psest_3221 0.83 -2.3
3,394,752 + Psest_3221 0.83 +0.2
3,394,752 + Psest_3221 0.83 +1.4
3,394,752 + Psest_3221 0.83 -0.1
3,394,752 + Psest_3221 0.83 +0.7
3,394,911 - +0.4
3,394,928 + +1.1
3,395,000 + -0.2
3,395,000 + +0.1
3,395,069 + +0.8
3,395,069 + -0.4
3,395,069 + +0.3
3,395,069 + +0.4
3,395,070 - -1.1
3,395,070 - +0.9
3,395,070 - -1.0
3,395,070 - -0.5
3,395,070 - -0.6
3,395,070 - -1.6
3,395,082 - +0.4
3,395,082 - +0.3
3,395,310 + Psest_3222 0.26 +0.6
3,395,523 + Psest_3222 0.60 +1.9
3,395,523 + Psest_3222 0.60 +0.1
3,395,523 + Psest_3222 0.60 -0.1
3,395,736 - +0.1
3,395,736 - +0.5
3,395,758 + +0.6
3,395,759 - +1.4
3,395,772 + +0.2
3,395,773 - +0.4

Or see this region's nucleotide sequence