Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3185

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3184 and Psest_3185 overlap by 4 nucleotidesPsest_3185 and Psest_3186 overlap by 4 nucleotides Psest_3184: Psest_3184 - hypothetical protein, at 3,356,548 to 3,357,720 _3184 Psest_3185: Psest_3185 - MoxR-like ATPases, at 3,357,717 to 3,358,730 _3185 Psest_3186: Psest_3186 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 3,358,727 to 3,360,055 _3186 Position (kb) 3357 3358 3359Strain fitness (log2 ratio) -2 -1 0 1 2at 3357.034 kb on + strand, within Psest_3184at 3357.035 kb on - strand, within Psest_3184at 3357.227 kb on - strand, within Psest_3184at 3357.250 kb on + strand, within Psest_3184at 3357.250 kb on + strand, within Psest_3184at 3357.251 kb on - strand, within Psest_3184at 3357.326 kb on - strand, within Psest_3184at 3357.362 kb on + strand, within Psest_3184at 3357.362 kb on + strand, within Psest_3184at 3357.363 kb on - strand, within Psest_3184at 3357.363 kb on - strand, within Psest_3184at 3357.363 kb on - strand, within Psest_3184at 3357.363 kb on - strand, within Psest_3184at 3357.449 kb on + strand, within Psest_3184at 3357.450 kb on - strand, within Psest_3184at 3357.716 kb on + strandat 3357.716 kb on + strandat 3357.717 kb on - strandat 3357.832 kb on + strand, within Psest_3185at 3358.027 kb on - strand, within Psest_3185at 3358.142 kb on - strand, within Psest_3185at 3358.461 kb on + strand, within Psest_3185at 3358.907 kb on - strand, within Psest_3186at 3358.907 kb on - strand, within Psest_3186at 3358.966 kb on - strand, within Psest_3186at 3359.064 kb on + strand, within Psest_3186at 3359.100 kb on - strand, within Psest_3186at 3359.100 kb on - strand, within Psest_3186at 3359.152 kb on - strand, within Psest_3186at 3359.152 kb on - strand, within Psest_3186at 3359.152 kb on - strand, within Psest_3186at 3359.152 kb on - strand, within Psest_3186at 3359.420 kb on + strand, within Psest_3186at 3359.473 kb on + strand, within Psest_3186at 3359.474 kb on - strand, within Psest_3186at 3359.474 kb on - strand, within Psest_3186at 3359.474 kb on - strand, within Psest_3186at 3359.658 kb on - strand, within Psest_3186at 3359.658 kb on - strand, within Psest_3186at 3359.658 kb on - strand, within Psest_3186at 3359.713 kb on - strand, within Psest_3186

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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3,357,034 + Psest_3184 0.41 -0.6
3,357,035 - Psest_3184 0.42 +1.0
3,357,227 - Psest_3184 0.58 -1.9
3,357,250 + Psest_3184 0.60 -1.2
3,357,250 + Psest_3184 0.60 +0.6
3,357,251 - Psest_3184 0.60 -0.5
3,357,326 - Psest_3184 0.66 -0.1
3,357,362 + Psest_3184 0.69 +0.5
3,357,362 + Psest_3184 0.69 -0.5
3,357,363 - Psest_3184 0.69 +0.8
3,357,363 - Psest_3184 0.69 +0.7
3,357,363 - Psest_3184 0.69 +0.8
3,357,363 - Psest_3184 0.69 +0.4
3,357,449 + Psest_3184 0.77 +0.4
3,357,450 - Psest_3184 0.77 -0.4
3,357,716 + +0.0
3,357,716 + +0.0
3,357,717 - +0.1
3,357,832 + Psest_3185 0.11 +0.9
3,358,027 - Psest_3185 0.31 +1.6
3,358,142 - Psest_3185 0.42 +1.0
3,358,461 + Psest_3185 0.73 +0.7
3,358,907 - Psest_3186 0.14 -0.9
3,358,907 - Psest_3186 0.14 +2.0
3,358,966 - Psest_3186 0.18 +2.7
3,359,064 + Psest_3186 0.25 -0.5
3,359,100 - Psest_3186 0.28 +0.3
3,359,100 - Psest_3186 0.28 +2.5
3,359,152 - Psest_3186 0.32 +1.0
3,359,152 - Psest_3186 0.32 -0.3
3,359,152 - Psest_3186 0.32 -1.2
3,359,152 - Psest_3186 0.32 +0.6
3,359,420 + Psest_3186 0.52 +0.3
3,359,473 + Psest_3186 0.56 -0.8
3,359,474 - Psest_3186 0.56 +0.6
3,359,474 - Psest_3186 0.56 +0.7
3,359,474 - Psest_3186 0.56 +0.5
3,359,658 - Psest_3186 0.70 +1.6
3,359,658 - Psest_3186 0.70 +0.9
3,359,658 - Psest_3186 0.70 -0.9
3,359,713 - Psest_3186 0.74 -0.4

Or see this region's nucleotide sequence