Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3114

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3112 and Psest_3113 overlap by 4 nucleotidesPsest_3113 and Psest_3114 overlap by 4 nucleotidesPsest_3114 and Psest_3115 are separated by 103 nucleotides Psest_3112: Psest_3112 - electron transport complex, RnfABCDGE type, A subunit, at 3,289,349 to 3,289,933 _3112 Psest_3113: Psest_3113 - electron transport complex, RnfABCDGE type, B subunit, at 3,289,930 to 3,290,505 _3113 Psest_3114: Psest_3114 - electron transport complex, RnfABCDGE type, C subunit, at 3,290,502 to 3,293,180 _3114 Psest_3115: Psest_3115 - electron transport complex, RnfABCDGE type, D subunit, at 3,293,284 to 3,294,312 _3115 Position (kb) 3290 3291 3292 3293 3294Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 3289.517 kb on + strand, within Psest_3112at 3289.517 kb on + strand, within Psest_3112at 3289.518 kb on - strand, within Psest_3112at 3289.518 kb on - strand, within Psest_3112at 3289.532 kb on + strand, within Psest_3112at 3289.532 kb on + strand, within Psest_3112at 3289.532 kb on + strand, within Psest_3112at 3289.532 kb on + strand, within Psest_3112at 3289.532 kb on + strand, within Psest_3112at 3289.533 kb on - strand, within Psest_3112at 3289.533 kb on - strand, within Psest_3112at 3289.647 kb on - strand, within Psest_3112at 3289.647 kb on - strand, within Psest_3112at 3289.929 kb on + strandat 3289.929 kb on + strandat 3289.929 kb on + strandat 3289.930 kb on - strandat 3289.930 kb on - strandat 3290.142 kb on + strand, within Psest_3113at 3290.143 kb on - strand, within Psest_3113at 3290.143 kb on - strand, within Psest_3113at 3290.251 kb on + strand, within Psest_3113at 3290.340 kb on + strand, within Psest_3113at 3290.657 kb on - strandat 3290.782 kb on + strand, within Psest_3114at 3290.782 kb on + strand, within Psest_3114at 3290.782 kb on + strand, within Psest_3114at 3290.782 kb on + strand, within Psest_3114at 3290.782 kb on + strand, within Psest_3114at 3290.782 kb on + strand, within Psest_3114at 3290.782 kb on + strand, within Psest_3114at 3290.782 kb on + strand, within Psest_3114at 3290.782 kb on + strand, within Psest_3114at 3290.783 kb on - strand, within Psest_3114at 3290.783 kb on - strand, within Psest_3114at 3290.783 kb on - strand, within Psest_3114at 3290.783 kb on - strand, within Psest_3114at 3291.018 kb on + strand, within Psest_3114at 3291.018 kb on + strand, within Psest_3114at 3291.018 kb on + strand, within Psest_3114at 3291.018 kb on + strand, within Psest_3114at 3291.019 kb on - strand, within Psest_3114at 3291.019 kb on - strand, within Psest_3114at 3291.019 kb on - strand, within Psest_3114at 3291.019 kb on - strand, within Psest_3114at 3291.019 kb on - strand, within Psest_3114at 3291.019 kb on - strand, within Psest_3114at 3291.019 kb on - strand, within Psest_3114at 3291.196 kb on + strand, within Psest_3114at 3291.196 kb on + strand, within Psest_3114at 3291.197 kb on - strand, within Psest_3114at 3291.341 kb on - strand, within Psest_3114at 3291.445 kb on + strand, within Psest_3114at 3291.445 kb on + strand, within Psest_3114at 3291.445 kb on + strand, within Psest_3114at 3291.445 kb on + strand, within Psest_3114at 3291.446 kb on - strand, within Psest_3114at 3291.446 kb on - strand, within Psest_3114at 3291.753 kb on + strand, within Psest_3114at 3291.753 kb on + strand, within Psest_3114at 3291.753 kb on + strand, within Psest_3114at 3291.754 kb on - strand, within Psest_3114at 3291.787 kb on - strand, within Psest_3114at 3291.787 kb on - strand, within Psest_3114at 3291.787 kb on - strand, within Psest_3114at 3291.787 kb on - strand, within Psest_3114at 3291.790 kb on - strand, within Psest_3114at 3291.852 kb on - strand, within Psest_3114at 3291.852 kb on - strand, within Psest_3114at 3293.000 kb on - strandat 3293.117 kb on - strandat 3293.166 kb on + strandat 3293.247 kb on - strandat 3293.665 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.807 kb on + strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.808 kb on - strand, within Psest_3115at 3293.984 kb on + strand, within Psest_3115at 3293.984 kb on + strand, within Psest_3115at 3293.984 kb on + strand, within Psest_3115at 3293.984 kb on + strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3293.985 kb on - strand, within Psest_3115at 3294.154 kb on - strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.163 kb on + strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115at 3294.164 kb on - strand, within Psest_3115

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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3,289,517 + Psest_3112 0.29 +1.2
3,289,517 + Psest_3112 0.29 +0.7
3,289,518 - Psest_3112 0.29 +1.4
3,289,518 - Psest_3112 0.29 -1.4
3,289,532 + Psest_3112 0.31 +1.2
3,289,532 + Psest_3112 0.31 +2.7
3,289,532 + Psest_3112 0.31 -0.4
3,289,532 + Psest_3112 0.31 +1.2
3,289,532 + Psest_3112 0.31 +1.0
3,289,533 - Psest_3112 0.31 +1.4
3,289,533 - Psest_3112 0.31 +1.1
3,289,647 - Psest_3112 0.51 +0.8
3,289,647 - Psest_3112 0.51 +0.4
3,289,929 + +0.7
3,289,929 + +0.7
3,289,929 + +1.5
3,289,930 - -1.5
3,289,930 - -0.1
3,290,142 + Psest_3113 0.37 +0.5
3,290,143 - Psest_3113 0.37 +1.6
3,290,143 - Psest_3113 0.37 -0.2
3,290,251 + Psest_3113 0.56 +1.7
3,290,340 + Psest_3113 0.71 +1.2
3,290,657 - +1.4
3,290,782 + Psest_3114 0.10 -1.5
3,290,782 + Psest_3114 0.10 -0.5
3,290,782 + Psest_3114 0.10 -2.3
3,290,782 + Psest_3114 0.10 +1.9
3,290,782 + Psest_3114 0.10 +0.5
3,290,782 + Psest_3114 0.10 +0.9
3,290,782 + Psest_3114 0.10 +0.6
3,290,782 + Psest_3114 0.10 +1.5
3,290,782 + Psest_3114 0.10 -0.2
3,290,783 - Psest_3114 0.10 +0.2
3,290,783 - Psest_3114 0.10 +0.2
3,290,783 - Psest_3114 0.10 +0.8
3,290,783 - Psest_3114 0.10 +1.0
3,291,018 + Psest_3114 0.19 +1.1
3,291,018 + Psest_3114 0.19 +2.4
3,291,018 + Psest_3114 0.19 +1.3
3,291,018 + Psest_3114 0.19 +0.8
3,291,019 - Psest_3114 0.19 -0.6
3,291,019 - Psest_3114 0.19 -0.3
3,291,019 - Psest_3114 0.19 +1.5
3,291,019 - Psest_3114 0.19 +1.9
3,291,019 - Psest_3114 0.19 +0.8
3,291,019 - Psest_3114 0.19 -0.2
3,291,019 - Psest_3114 0.19 +2.5
3,291,196 + Psest_3114 0.26 +1.4
3,291,196 + Psest_3114 0.26 +2.9
3,291,197 - Psest_3114 0.26 +0.4
3,291,341 - Psest_3114 0.31 +3.7
3,291,445 + Psest_3114 0.35 +2.0
3,291,445 + Psest_3114 0.35 +0.8
3,291,445 + Psest_3114 0.35 +0.4
3,291,445 + Psest_3114 0.35 +2.2
3,291,446 - Psest_3114 0.35 +0.4
3,291,446 - Psest_3114 0.35 +1.4
3,291,753 + Psest_3114 0.47 +1.2
3,291,753 + Psest_3114 0.47 +0.8
3,291,753 + Psest_3114 0.47 +1.7
3,291,754 - Psest_3114 0.47 -0.8
3,291,787 - Psest_3114 0.48 -0.4
3,291,787 - Psest_3114 0.48 +0.4
3,291,787 - Psest_3114 0.48 +1.2
3,291,787 - Psest_3114 0.48 +1.1
3,291,790 - Psest_3114 0.48 +2.5
3,291,852 - Psest_3114 0.50 +4.4
3,291,852 - Psest_3114 0.50 +3.1
3,293,000 - -0.2
3,293,117 - -0.2
3,293,166 + +0.7
3,293,247 - +2.8
3,293,665 + Psest_3115 0.37 +1.9
3,293,807 + Psest_3115 0.51 +0.4
3,293,807 + Psest_3115 0.51 -0.3
3,293,807 + Psest_3115 0.51 +1.2
3,293,807 + Psest_3115 0.51 +2.0
3,293,807 + Psest_3115 0.51 -1.1
3,293,807 + Psest_3115 0.51 -0.2
3,293,808 - Psest_3115 0.51 +1.4
3,293,808 - Psest_3115 0.51 +1.7
3,293,808 - Psest_3115 0.51 -0.1
3,293,808 - Psest_3115 0.51 +1.7
3,293,808 - Psest_3115 0.51 -0.5
3,293,984 + Psest_3115 0.68 -1.0
3,293,984 + Psest_3115 0.68 +0.2
3,293,984 + Psest_3115 0.68 +0.4
3,293,984 + Psest_3115 0.68 +4.8
3,293,985 - Psest_3115 0.68 +0.5
3,293,985 - Psest_3115 0.68 +1.4
3,293,985 - Psest_3115 0.68 +1.9
3,293,985 - Psest_3115 0.68 +0.4
3,293,985 - Psest_3115 0.68 -0.2
3,294,154 - Psest_3115 0.85 +1.4
3,294,163 + Psest_3115 0.85 +0.0
3,294,163 + Psest_3115 0.85 -0.4
3,294,163 + Psest_3115 0.85 +1.4
3,294,163 + Psest_3115 0.85 +0.3
3,294,163 + Psest_3115 0.85 +3.1
3,294,163 + Psest_3115 0.85 +2.7
3,294,163 + Psest_3115 0.85 +0.6
3,294,163 + Psest_3115 0.85 -0.2
3,294,164 - Psest_3115 0.86 +3.1
3,294,164 - Psest_3115 0.86 +0.3
3,294,164 - Psest_3115 0.86 +0.4
3,294,164 - Psest_3115 0.86 +2.0
3,294,164 - Psest_3115 0.86 +0.4
3,294,164 - Psest_3115 0.86 +2.2

Or see this region's nucleotide sequence