Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2956

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2953 and Psest_2954 overlap by 1 nucleotidesPsest_2954 and Psest_2955 overlap by 4 nucleotidesPsest_2955 and Psest_2956 are separated by 157 nucleotidesPsest_2956 and Psest_2957 are separated by 353 nucleotidesPsest_2957 and Psest_2958 are separated by 120 nucleotides Psest_2953: Psest_2953 - Histone acetyltransferase, at 3,150,384 to 3,150,851 _2953 Psest_2954: Psest_2954 - hypothetical protein, at 3,150,851 to 3,151,219 _2954 Psest_2955: Psest_2955 - Predicted transcriptional regulator with C-terminal CBS domains, at 3,151,216 to 3,151,545 _2955 Psest_2956: Psest_2956 - Uncharacterized conserved protein, at 3,151,703 to 3,152,155 _2956 Psest_2957: Psest_2957 - competence protein ComEA helix-hairpin-helix repeat region, at 3,152,509 to 3,152,823 _2957 Psest_2958: Psest_2958 - flagellar hook-associated protein 3, at 3,152,944 to 3,154,212 _2958 Position (kb) 3151 3152 3153Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3150.816 kb on + strandat 3150.816 kb on + strandat 3150.817 kb on - strandat 3150.994 kb on + strand, within Psest_2954at 3151.058 kb on + strand, within Psest_2954at 3151.059 kb on - strand, within Psest_2954at 3151.059 kb on - strand, within Psest_2954at 3151.059 kb on - strand, within Psest_2954at 3151.078 kb on + strand, within Psest_2954at 3151.439 kb on - strand, within Psest_2955at 3151.505 kb on + strand, within Psest_2955at 3151.505 kb on + strand, within Psest_2955at 3151.506 kb on - strand, within Psest_2955at 3151.506 kb on - strand, within Psest_2955at 3151.538 kb on - strandat 3151.538 kb on - strandat 3151.538 kb on - strandat 3151.550 kb on - strandat 3151.550 kb on - strandat 3151.587 kb on - strandat 3151.587 kb on - strandat 3151.754 kb on + strand, within Psest_2956at 3151.754 kb on + strand, within Psest_2956at 3151.917 kb on + strand, within Psest_2956at 3151.918 kb on - strand, within Psest_2956at 3151.918 kb on - strand, within Psest_2956at 3151.968 kb on + strand, within Psest_2956at 3151.969 kb on - strand, within Psest_2956at 3152.003 kb on + strand, within Psest_2956at 3152.004 kb on - strand, within Psest_2956at 3152.004 kb on - strand, within Psest_2956at 3152.034 kb on - strand, within Psest_2956at 3152.127 kb on + strandat 3152.127 kb on + strandat 3152.127 kb on + strandat 3152.127 kb on + strandat 3152.127 kb on + strandat 3152.127 kb on + strandat 3152.511 kb on - strandat 3152.566 kb on + strand, within Psest_2957at 3152.567 kb on - strand, within Psest_2957at 3152.615 kb on + strand, within Psest_2957at 3152.650 kb on - strand, within Psest_2957at 3152.667 kb on + strand, within Psest_2957at 3152.667 kb on + strand, within Psest_2957at 3152.668 kb on - strand, within Psest_2957at 3152.668 kb on - strand, within Psest_2957at 3152.689 kb on - strand, within Psest_2957at 3152.851 kb on + strandat 3152.851 kb on + strandat 3152.851 kb on + strandat 3152.851 kb on + strandat 3152.852 kb on - strandat 3152.988 kb on - strandat 3152.988 kb on - strandat 3152.988 kb on - strandat 3153.120 kb on + strand, within Psest_2958at 3153.121 kb on - strand, within Psest_2958at 3153.130 kb on + strand, within Psest_2958at 3153.131 kb on - strand, within Psest_2958

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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3,150,816 + -0.1
3,150,816 + -0.3
3,150,817 - -0.8
3,150,994 + Psest_2954 0.39 +0.3
3,151,058 + Psest_2954 0.56 -0.8
3,151,059 - Psest_2954 0.56 +0.1
3,151,059 - Psest_2954 0.56 +0.3
3,151,059 - Psest_2954 0.56 +0.8
3,151,078 + Psest_2954 0.62 +3.3
3,151,439 - Psest_2955 0.68 +3.4
3,151,505 + Psest_2955 0.88 +0.4
3,151,505 + Psest_2955 0.88 -0.4
3,151,506 - Psest_2955 0.88 -0.7
3,151,506 - Psest_2955 0.88 -0.8
3,151,538 - +0.1
3,151,538 - +0.4
3,151,538 - -0.1
3,151,550 - +0.0
3,151,550 - -0.4
3,151,587 - -1.2
3,151,587 - -0.5
3,151,754 + Psest_2956 0.11 +2.2
3,151,754 + Psest_2956 0.11 +0.3
3,151,917 + Psest_2956 0.47 -1.5
3,151,918 - Psest_2956 0.47 +0.5
3,151,918 - Psest_2956 0.47 -1.6
3,151,968 + Psest_2956 0.58 +1.3
3,151,969 - Psest_2956 0.59 +2.3
3,152,003 + Psest_2956 0.66 +1.1
3,152,004 - Psest_2956 0.66 +0.4
3,152,004 - Psest_2956 0.66 +0.6
3,152,034 - Psest_2956 0.73 +0.6
3,152,127 + -1.5
3,152,127 + +1.8
3,152,127 + +0.3
3,152,127 + -0.0
3,152,127 + +1.9
3,152,127 + -0.2
3,152,511 - -1.3
3,152,566 + Psest_2957 0.18 +0.2
3,152,567 - Psest_2957 0.18 +0.9
3,152,615 + Psest_2957 0.34 -0.5
3,152,650 - Psest_2957 0.45 -0.6
3,152,667 + Psest_2957 0.50 +0.2
3,152,667 + Psest_2957 0.50 -0.3
3,152,668 - Psest_2957 0.50 +0.4
3,152,668 - Psest_2957 0.50 -2.2
3,152,689 - Psest_2957 0.57 +1.2
3,152,851 + -1.3
3,152,851 + +0.3
3,152,851 + +0.7
3,152,851 + -2.8
3,152,852 - -0.9
3,152,988 - +0.3
3,152,988 - -0.7
3,152,988 - +1.7
3,153,120 + Psest_2958 0.14 +0.7
3,153,121 - Psest_2958 0.14 -0.5
3,153,130 + Psest_2958 0.15 +0.7
3,153,131 - Psest_2958 0.15 -2.4

Or see this region's nucleotide sequence