Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2953 and Psest_2954 overlap by 1 nucleotides Psest_2954 and Psest_2955 overlap by 4 nucleotides Psest_2955 and Psest_2956 are separated by 157 nucleotides Psest_2956 and Psest_2957 are separated by 353 nucleotides Psest_2957 and Psest_2958 are separated by 120 nucleotides
Psest_2953: Psest_2953 - Histone acetyltransferase, at 3,150,384 to 3,150,851
_2953
Psest_2954: Psest_2954 - hypothetical protein, at 3,150,851 to 3,151,219
_2954
Psest_2955: Psest_2955 - Predicted transcriptional regulator with C-terminal CBS domains, at 3,151,216 to 3,151,545
_2955
Psest_2956: Psest_2956 - Uncharacterized conserved protein, at 3,151,703 to 3,152,155
_2956
Psest_2957: Psest_2957 - competence protein ComEA helix-hairpin-helix repeat region, at 3,152,509 to 3,152,823
_2957
Psest_2958: Psest_2958 - flagellar hook-associated protein 3, at 3,152,944 to 3,154,212
_2958
Position (kb)
3151
3152
3153 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3150.816 kb on + strand at 3150.816 kb on + strand at 3150.817 kb on - strand at 3150.994 kb on + strand, within Psest_2954 at 3151.058 kb on + strand, within Psest_2954 at 3151.059 kb on - strand, within Psest_2954 at 3151.059 kb on - strand, within Psest_2954 at 3151.059 kb on - strand, within Psest_2954 at 3151.078 kb on + strand, within Psest_2954 at 3151.439 kb on - strand, within Psest_2955 at 3151.505 kb on + strand, within Psest_2955 at 3151.505 kb on + strand, within Psest_2955 at 3151.506 kb on - strand, within Psest_2955 at 3151.506 kb on - strand, within Psest_2955 at 3151.538 kb on - strand at 3151.538 kb on - strand at 3151.538 kb on - strand at 3151.550 kb on - strand at 3151.550 kb on - strand at 3151.587 kb on - strand at 3151.587 kb on - strand at 3151.754 kb on + strand, within Psest_2956 at 3151.754 kb on + strand, within Psest_2956 at 3151.917 kb on + strand, within Psest_2956 at 3151.918 kb on - strand, within Psest_2956 at 3151.918 kb on - strand, within Psest_2956 at 3151.968 kb on + strand, within Psest_2956 at 3151.969 kb on - strand, within Psest_2956 at 3152.003 kb on + strand, within Psest_2956 at 3152.004 kb on - strand, within Psest_2956 at 3152.004 kb on - strand, within Psest_2956 at 3152.034 kb on - strand, within Psest_2956 at 3152.127 kb on + strand at 3152.127 kb on + strand at 3152.127 kb on + strand at 3152.127 kb on + strand at 3152.127 kb on + strand at 3152.127 kb on + strand at 3152.511 kb on - strand at 3152.566 kb on + strand, within Psest_2957 at 3152.567 kb on - strand, within Psest_2957 at 3152.615 kb on + strand, within Psest_2957 at 3152.650 kb on - strand, within Psest_2957 at 3152.667 kb on + strand, within Psest_2957 at 3152.667 kb on + strand, within Psest_2957 at 3152.668 kb on - strand, within Psest_2957 at 3152.668 kb on - strand, within Psest_2957 at 3152.689 kb on - strand, within Psest_2957 at 3152.851 kb on + strand at 3152.851 kb on + strand at 3152.851 kb on + strand at 3152.851 kb on + strand at 3152.852 kb on - strand at 3152.988 kb on - strand at 3152.988 kb on - strand at 3152.988 kb on - strand at 3153.120 kb on + strand, within Psest_2958 at 3153.121 kb on - strand, within Psest_2958 at 3153.130 kb on + strand, within Psest_2958 at 3153.131 kb on - strand, within Psest_2958
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 3,150,816 + -0.1 3,150,816 + -0.3 3,150,817 - -0.8 3,150,994 + Psest_2954 0.39 +0.3 3,151,058 + Psest_2954 0.56 -0.8 3,151,059 - Psest_2954 0.56 +0.1 3,151,059 - Psest_2954 0.56 +0.3 3,151,059 - Psest_2954 0.56 +0.8 3,151,078 + Psest_2954 0.62 +3.3 3,151,439 - Psest_2955 0.68 +3.4 3,151,505 + Psest_2955 0.88 +0.4 3,151,505 + Psest_2955 0.88 -0.4 3,151,506 - Psest_2955 0.88 -0.7 3,151,506 - Psest_2955 0.88 -0.8 3,151,538 - +0.1 3,151,538 - +0.4 3,151,538 - -0.1 3,151,550 - +0.0 3,151,550 - -0.4 3,151,587 - -1.2 3,151,587 - -0.5 3,151,754 + Psest_2956 0.11 +2.2 3,151,754 + Psest_2956 0.11 +0.3 3,151,917 + Psest_2956 0.47 -1.5 3,151,918 - Psest_2956 0.47 +0.5 3,151,918 - Psest_2956 0.47 -1.6 3,151,968 + Psest_2956 0.58 +1.3 3,151,969 - Psest_2956 0.59 +2.3 3,152,003 + Psest_2956 0.66 +1.1 3,152,004 - Psest_2956 0.66 +0.4 3,152,004 - Psest_2956 0.66 +0.6 3,152,034 - Psest_2956 0.73 +0.6 3,152,127 + -1.5 3,152,127 + +1.8 3,152,127 + +0.3 3,152,127 + -0.0 3,152,127 + +1.9 3,152,127 + -0.2 3,152,511 - -1.3 3,152,566 + Psest_2957 0.18 +0.2 3,152,567 - Psest_2957 0.18 +0.9 3,152,615 + Psest_2957 0.34 -0.5 3,152,650 - Psest_2957 0.45 -0.6 3,152,667 + Psest_2957 0.50 +0.2 3,152,667 + Psest_2957 0.50 -0.3 3,152,668 - Psest_2957 0.50 +0.4 3,152,668 - Psest_2957 0.50 -2.2 3,152,689 - Psest_2957 0.57 +1.2 3,152,851 + -1.3 3,152,851 + +0.3 3,152,851 + +0.7 3,152,851 + -2.8 3,152,852 - -0.9 3,152,988 - +0.3 3,152,988 - -0.7 3,152,988 - +1.7 3,153,120 + Psest_2958 0.14 +0.7 3,153,121 - Psest_2958 0.14 -0.5 3,153,130 + Psest_2958 0.15 +0.7 3,153,131 - Psest_2958 0.15 -2.4
Or see this region's nucleotide sequence