Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2923

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2922 and Psest_2923 are separated by 48 nucleotidesPsest_2923 and Psest_2924 are separated by 9 nucleotidesPsest_2924 and Psest_2925 are separated by 2 nucleotides Psest_2922: Psest_2922 - Lhr-like helicases, at 3,113,492 to 3,117,919 _2922 Psest_2923: Psest_2923 - hypothetical protein, at 3,117,968 to 3,118,273 _2923 Psest_2924: Psest_2924 - Short-chain alcohol dehydrogenase of unknown specificity, at 3,118,283 to 3,118,981 _2924 Psest_2925: Psest_2925 - Protein of unknown function (DUF1264)., at 3,118,984 to 3,119,799 _2925 Position (kb) 3117 3118 3119Strain fitness (log2 ratio) -2 -1 0 1at 3117.060 kb on + strand, within Psest_2922at 3117.389 kb on + strand, within Psest_2922at 3117.389 kb on + strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.390 kb on - strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.393 kb on + strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.394 kb on - strand, within Psest_2922at 3117.409 kb on + strand, within Psest_2922at 3117.562 kb on + strandat 3117.562 kb on + strandat 3117.600 kb on + strandat 3117.600 kb on + strandat 3117.601 kb on - strandat 3117.860 kb on + strandat 3117.861 kb on - strandat 3117.861 kb on - strandat 3117.861 kb on - strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.924 kb on + strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3117.925 kb on - strandat 3118.066 kb on + strand, within Psest_2923at 3118.066 kb on + strand, within Psest_2923at 3118.268 kb on + strandat 3118.509 kb on - strand, within Psest_2924at 3118.529 kb on + strand, within Psest_2924at 3118.530 kb on - strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.727 kb on + strand, within Psest_2924at 3118.859 kb on + strand, within Psest_2924at 3118.860 kb on - strand, within Psest_2924at 3118.898 kb on + strand, within Psest_2924at 3118.898 kb on + strand, within Psest_2924at 3118.980 kb on - strandat 3119.163 kb on + strand, within Psest_2925at 3119.164 kb on - strand, within Psest_2925

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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3,117,060 + Psest_2922 0.81 +0.6
3,117,389 + Psest_2922 0.88 +0.3
3,117,389 + Psest_2922 0.88 -0.3
3,117,390 - Psest_2922 0.88 +1.0
3,117,390 - Psest_2922 0.88 +1.0
3,117,390 - Psest_2922 0.88 +1.6
3,117,390 - Psest_2922 0.88 +0.4
3,117,393 + Psest_2922 0.88 +1.2
3,117,393 + Psest_2922 0.88 -0.9
3,117,393 + Psest_2922 0.88 -1.6
3,117,393 + Psest_2922 0.88 +0.1
3,117,393 + Psest_2922 0.88 -0.7
3,117,394 - Psest_2922 0.88 +0.4
3,117,394 - Psest_2922 0.88 -0.8
3,117,394 - Psest_2922 0.88 -0.6
3,117,409 + Psest_2922 0.88 -0.1
3,117,562 + +1.3
3,117,562 + +0.7
3,117,600 + +1.5
3,117,600 + +0.4
3,117,601 - +1.3
3,117,860 + +0.2
3,117,861 - +1.3
3,117,861 - -0.0
3,117,861 - -1.3
3,117,924 + -0.7
3,117,924 + +0.4
3,117,924 + +0.6
3,117,924 + -0.2
3,117,924 + -0.0
3,117,924 + -0.3
3,117,924 + +0.1
3,117,924 + -0.5
3,117,924 + -0.7
3,117,925 - +0.6
3,117,925 - +0.1
3,117,925 - +0.4
3,117,925 - +0.2
3,117,925 - -0.4
3,118,066 + Psest_2923 0.32 +1.0
3,118,066 + Psest_2923 0.32 +0.8
3,118,268 + -0.8
3,118,509 - Psest_2924 0.32 +0.3
3,118,529 + Psest_2924 0.35 +1.3
3,118,530 - Psest_2924 0.35 +0.7
3,118,727 + Psest_2924 0.64 -2.0
3,118,727 + Psest_2924 0.64 -0.3
3,118,727 + Psest_2924 0.64 -0.5
3,118,859 + Psest_2924 0.82 +0.5
3,118,860 - Psest_2924 0.83 -1.7
3,118,898 + Psest_2924 0.88 +0.4
3,118,898 + Psest_2924 0.88 +0.2
3,118,980 - +0.4
3,119,163 + Psest_2925 0.22 +0.6
3,119,164 - Psest_2925 0.22 +0.1

Or see this region's nucleotide sequence