Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1428 and Psest_1429 are separated by 80 nucleotides Psest_1429 and Psest_1430 are separated by 25 nucleotides
Psest_1428: Psest_1428 - Threonine dehydrogenase and related Zn-dependent dehydrogenases, at 1,536,853 to 1,537,941
_1428
Psest_1429: Psest_1429 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit, at 1,538,022 to 1,539,011
_1429
Psest_1430: Psest_1430 - Choline dehydrogenase and related flavoproteins, at 1,539,037 to 1,540,614
_1430
Position (kb)
1538
1539
1540 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1537.394 kb on - strand, within Psest_1428 at 1537.394 kb on - strand, within Psest_1428 at 1537.394 kb on - strand, within Psest_1428 at 1537.555 kb on + strand, within Psest_1428 at 1537.589 kb on + strand, within Psest_1428 at 1537.589 kb on + strand, within Psest_1428 at 1537.791 kb on - strand, within Psest_1428 at 1538.231 kb on - strand, within Psest_1429 at 1538.681 kb on + strand, within Psest_1429 at 1538.681 kb on + strand, within Psest_1429 at 1538.681 kb on + strand, within Psest_1429 at 1538.681 kb on + strand, within Psest_1429 at 1538.681 kb on + strand, within Psest_1429 at 1538.681 kb on + strand, within Psest_1429 at 1538.681 kb on + strand, within Psest_1429 at 1538.681 kb on + strand, within Psest_1429 at 1538.682 kb on - strand, within Psest_1429 at 1538.682 kb on - strand, within Psest_1429 at 1538.682 kb on - strand, within Psest_1429 at 1538.682 kb on - strand, within Psest_1429 at 1538.923 kb on + strand at 1538.923 kb on + strand at 1538.923 kb on + strand at 1538.923 kb on + strand at 1538.923 kb on + strand at 1538.923 kb on + strand at 1538.923 kb on + strand at 1538.923 kb on + strand at 1538.923 kb on + strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.924 kb on - strand at 1538.951 kb on - strand at 1538.974 kb on + strand at 1538.974 kb on + strand at 1538.974 kb on + strand at 1538.974 kb on + strand at 1538.974 kb on + strand at 1538.974 kb on + strand at 1538.974 kb on + strand at 1538.974 kb on + strand at 1538.975 kb on - strand at 1538.975 kb on - strand at 1538.975 kb on - strand at 1539.028 kb on - strand at 1539.028 kb on - strand at 1539.028 kb on - strand at 1539.028 kb on - strand at 1539.299 kb on + strand, within Psest_1430 at 1539.300 kb on - strand, within Psest_1430 at 1539.389 kb on + strand, within Psest_1430 at 1539.479 kb on + strand, within Psest_1430 at 1539.479 kb on + strand, within Psest_1430 at 1539.479 kb on + strand, within Psest_1430 at 1539.479 kb on + strand, within Psest_1430 at 1539.479 kb on + strand, within Psest_1430 at 1539.479 kb on + strand, within Psest_1430 at 1539.479 kb on + strand, within Psest_1430 at 1539.480 kb on - strand, within Psest_1430 at 1539.480 kb on - strand, within Psest_1430 at 1539.614 kb on + strand, within Psest_1430 at 1539.615 kb on - strand, within Psest_1430 at 1539.615 kb on - strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.713 kb on + strand, within Psest_1430 at 1539.714 kb on - strand, within Psest_1430 at 1539.714 kb on - strand, within Psest_1430 at 1539.714 kb on - strand, within Psest_1430 at 1539.714 kb on - strand, within Psest_1430 at 1539.714 kb on - strand, within Psest_1430 at 1539.714 kb on - strand, within Psest_1430 at 1539.866 kb on + strand, within Psest_1430 at 1539.974 kb on + strand, within Psest_1430 at 1539.974 kb on + strand, within Psest_1430 at 1539.974 kb on + strand, within Psest_1430 at 1539.974 kb on + strand, within Psest_1430 at 1539.975 kb on - strand, within Psest_1430 at 1539.975 kb on - strand, within Psest_1430 at 1539.975 kb on - strand, within Psest_1430
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 1,537,394 - Psest_1428 0.50 -0.2 1,537,394 - Psest_1428 0.50 +0.9 1,537,394 - Psest_1428 0.50 +2.2 1,537,555 + Psest_1428 0.64 -0.7 1,537,589 + Psest_1428 0.68 -1.3 1,537,589 + Psest_1428 0.68 -0.0 1,537,791 - Psest_1428 0.86 -0.3 1,538,231 - Psest_1429 0.21 +1.0 1,538,681 + Psest_1429 0.67 +1.0 1,538,681 + Psest_1429 0.67 +0.1 1,538,681 + Psest_1429 0.67 +0.0 1,538,681 + Psest_1429 0.67 +2.1 1,538,681 + Psest_1429 0.67 +0.3 1,538,681 + Psest_1429 0.67 +0.0 1,538,681 + Psest_1429 0.67 +1.0 1,538,681 + Psest_1429 0.67 +2.0 1,538,682 - Psest_1429 0.67 -0.6 1,538,682 - Psest_1429 0.67 +1.3 1,538,682 - Psest_1429 0.67 -0.2 1,538,682 - Psest_1429 0.67 +0.9 1,538,923 + +0.6 1,538,923 + -0.7 1,538,923 + -1.2 1,538,923 + -0.8 1,538,923 + +0.1 1,538,923 + +0.3 1,538,923 + +0.6 1,538,923 + -1.4 1,538,923 + -0.2 1,538,924 - -0.2 1,538,924 - +0.6 1,538,924 - -1.3 1,538,924 - -0.6 1,538,924 - +0.5 1,538,924 - -0.8 1,538,924 - +1.3 1,538,924 - +0.4 1,538,924 - -0.0 1,538,924 - -0.4 1,538,924 - -0.1 1,538,951 - +0.3 1,538,974 + +1.4 1,538,974 + -3.0 1,538,974 + +2.1 1,538,974 + +0.0 1,538,974 + -1.0 1,538,974 + -2.1 1,538,974 + -1.4 1,538,974 + +1.9 1,538,975 - +0.1 1,538,975 - -1.0 1,538,975 - -0.8 1,539,028 - +2.9 1,539,028 - -1.6 1,539,028 - +0.2 1,539,028 - +0.2 1,539,299 + Psest_1430 0.17 -1.1 1,539,300 - Psest_1430 0.17 +1.0 1,539,389 + Psest_1430 0.22 +0.3 1,539,479 + Psest_1430 0.28 -0.8 1,539,479 + Psest_1430 0.28 -0.4 1,539,479 + Psest_1430 0.28 +0.5 1,539,479 + Psest_1430 0.28 +0.9 1,539,479 + Psest_1430 0.28 +0.0 1,539,479 + Psest_1430 0.28 +0.0 1,539,479 + Psest_1430 0.28 -0.3 1,539,480 - Psest_1430 0.28 -2.2 1,539,480 - Psest_1430 0.28 -0.4 1,539,614 + Psest_1430 0.37 -2.3 1,539,615 - Psest_1430 0.37 -1.1 1,539,615 - Psest_1430 0.37 +0.4 1,539,713 + Psest_1430 0.43 +2.2 1,539,713 + Psest_1430 0.43 -0.3 1,539,713 + Psest_1430 0.43 +0.1 1,539,713 + Psest_1430 0.43 +0.4 1,539,713 + Psest_1430 0.43 +0.6 1,539,713 + Psest_1430 0.43 +0.3 1,539,713 + Psest_1430 0.43 +0.5 1,539,713 + Psest_1430 0.43 +2.7 1,539,713 + Psest_1430 0.43 +2.1 1,539,713 + Psest_1430 0.43 -1.4 1,539,713 + Psest_1430 0.43 -1.0 1,539,713 + Psest_1430 0.43 -0.4 1,539,713 + Psest_1430 0.43 +1.4 1,539,713 + Psest_1430 0.43 +0.5 1,539,713 + Psest_1430 0.43 +0.2 1,539,713 + Psest_1430 0.43 -0.4 1,539,713 + Psest_1430 0.43 -0.6 1,539,714 - Psest_1430 0.43 -0.4 1,539,714 - Psest_1430 0.43 -0.4 1,539,714 - Psest_1430 0.43 +0.1 1,539,714 - Psest_1430 0.43 -1.9 1,539,714 - Psest_1430 0.43 -0.8 1,539,714 - Psest_1430 0.43 +0.2 1,539,866 + Psest_1430 0.53 +0.9 1,539,974 + Psest_1430 0.59 -1.0 1,539,974 + Psest_1430 0.59 +0.4 1,539,974 + Psest_1430 0.59 -1.6 1,539,974 + Psest_1430 0.59 +0.3 1,539,975 - Psest_1430 0.59 -0.8 1,539,975 - Psest_1430 0.59 -1.1 1,539,975 - Psest_1430 0.59 +0.6
Or see this region's nucleotide sequence