Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1392

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1391 and Psest_1392 are separated by 12 nucleotidesPsest_1392 and Psest_1393 are separated by 250 nucleotides Psest_1391: Psest_1391 - ABC-type uncharacterized transport system, permease component, at 1,499,516 to 1,500,622 _1391 Psest_1392: Psest_1392 - ABC-type uncharacterized transport systems, ATPase components, at 1,500,635 to 1,502,191 _1392 Psest_1393: Psest_1393 - AraC-type DNA-binding domain-containing proteins, at 1,502,442 to 1,503,362 _1393 Position (kb) 1500 1501 1502 1503Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1500.015 kb on + strand, within Psest_1391at 1500.016 kb on - strand, within Psest_1391at 1500.159 kb on + strand, within Psest_1391at 1500.159 kb on + strand, within Psest_1391at 1500.159 kb on + strand, within Psest_1391at 1500.159 kb on + strand, within Psest_1391at 1500.159 kb on + strand, within Psest_1391at 1500.160 kb on - strand, within Psest_1391at 1500.160 kb on - strand, within Psest_1391at 1500.160 kb on - strand, within Psest_1391at 1500.381 kb on + strand, within Psest_1391at 1500.381 kb on + strand, within Psest_1391at 1500.382 kb on - strand, within Psest_1391at 1500.451 kb on - strand, within Psest_1391at 1502.028 kb on + strand, within Psest_1392at 1502.028 kb on + strand, within Psest_1392at 1502.028 kb on + strand, within Psest_1392at 1502.028 kb on + strand, within Psest_1392at 1502.028 kb on + strand, within Psest_1392at 1502.029 kb on - strand, within Psest_1392at 1502.029 kb on - strand, within Psest_1392at 1502.385 kb on + strandat 1502.385 kb on + strandat 1502.385 kb on + strandat 1502.386 kb on - strandat 1502.386 kb on - strandat 1502.670 kb on + strand, within Psest_1393at 1502.670 kb on + strand, within Psest_1393at 1502.670 kb on + strand, within Psest_1393at 1502.670 kb on + strand, within Psest_1393at 1502.670 kb on + strand, within Psest_1393at 1502.671 kb on - strand, within Psest_1393at 1502.671 kb on - strand, within Psest_1393at 1502.671 kb on - strand, within Psest_1393at 1502.671 kb on - strand, within Psest_1393at 1502.676 kb on + strand, within Psest_1393at 1502.676 kb on + strand, within Psest_1393at 1502.676 kb on + strand, within Psest_1393at 1502.676 kb on + strand, within Psest_1393at 1502.676 kb on + strand, within Psest_1393at 1502.676 kb on + strand, within Psest_1393at 1502.676 kb on + strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.677 kb on - strand, within Psest_1393at 1502.691 kb on + strand, within Psest_1393at 1502.900 kb on - strand, within Psest_1393at 1502.900 kb on - strand, within Psest_1393at 1503.078 kb on + strand, within Psest_1393at 1503.078 kb on + strand, within Psest_1393at 1503.079 kb on - strand, within Psest_1393at 1503.079 kb on - strand, within Psest_1393at 1503.079 kb on - strand, within Psest_1393at 1503.184 kb on - strand, within Psest_1393

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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1,500,015 + Psest_1391 0.45 -0.8
1,500,016 - Psest_1391 0.45 +1.2
1,500,159 + Psest_1391 0.58 +1.0
1,500,159 + Psest_1391 0.58 +1.8
1,500,159 + Psest_1391 0.58 +0.2
1,500,159 + Psest_1391 0.58 -0.5
1,500,159 + Psest_1391 0.58 -0.7
1,500,160 - Psest_1391 0.58 -1.0
1,500,160 - Psest_1391 0.58 -0.3
1,500,160 - Psest_1391 0.58 +1.4
1,500,381 + Psest_1391 0.78 +0.4
1,500,381 + Psest_1391 0.78 +0.1
1,500,382 - Psest_1391 0.78 +0.1
1,500,451 - Psest_1391 0.84 -0.8
1,502,028 + Psest_1392 0.89 +1.9
1,502,028 + Psest_1392 0.89 +0.1
1,502,028 + Psest_1392 0.89 -0.2
1,502,028 + Psest_1392 0.89 -0.3
1,502,028 + Psest_1392 0.89 +2.9
1,502,029 - Psest_1392 0.90 -0.2
1,502,029 - Psest_1392 0.90 +0.3
1,502,385 + +0.6
1,502,385 + +2.5
1,502,385 + -0.2
1,502,386 - +0.0
1,502,386 - -0.1
1,502,670 + Psest_1393 0.25 +0.4
1,502,670 + Psest_1393 0.25 -0.4
1,502,670 + Psest_1393 0.25 -0.6
1,502,670 + Psest_1393 0.25 -2.9
1,502,670 + Psest_1393 0.25 +0.6
1,502,671 - Psest_1393 0.25 +0.3
1,502,671 - Psest_1393 0.25 +0.0
1,502,671 - Psest_1393 0.25 +0.1
1,502,671 - Psest_1393 0.25 -0.4
1,502,676 + Psest_1393 0.25 +1.8
1,502,676 + Psest_1393 0.25 +0.2
1,502,676 + Psest_1393 0.25 +1.6
1,502,676 + Psest_1393 0.25 -0.3
1,502,676 + Psest_1393 0.25 -1.2
1,502,676 + Psest_1393 0.25 +2.0
1,502,676 + Psest_1393 0.25 +1.8
1,502,677 - Psest_1393 0.26 +0.6
1,502,677 - Psest_1393 0.26 +1.5
1,502,677 - Psest_1393 0.26 -1.4
1,502,677 - Psest_1393 0.26 -0.8
1,502,677 - Psest_1393 0.26 -0.3
1,502,677 - Psest_1393 0.26 +0.6
1,502,677 - Psest_1393 0.26 +1.7
1,502,677 - Psest_1393 0.26 +0.0
1,502,677 - Psest_1393 0.26 -0.8
1,502,677 - Psest_1393 0.26 -0.4
1,502,677 - Psest_1393 0.26 -0.3
1,502,677 - Psest_1393 0.26 -0.6
1,502,677 - Psest_1393 0.26 -0.6
1,502,677 - Psest_1393 0.26 +1.0
1,502,677 - Psest_1393 0.26 -0.2
1,502,691 + Psest_1393 0.27 +0.1
1,502,900 - Psest_1393 0.50 -0.8
1,502,900 - Psest_1393 0.50 -1.2
1,503,078 + Psest_1393 0.69 -0.4
1,503,078 + Psest_1393 0.69 +0.7
1,503,079 - Psest_1393 0.69 +1.0
1,503,079 - Psest_1393 0.69 +0.2
1,503,079 - Psest_1393 0.69 +1.0
1,503,184 - Psest_1393 0.81 -0.6

Or see this region's nucleotide sequence