Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1368

Experiment: Fusidic 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1365 and Psest_1366 are separated by 221 nucleotidesPsest_1366 and Psest_1367 are separated by 55 nucleotidesPsest_1367 and Psest_1368 are separated by 79 nucleotidesPsest_1368 and Psest_1369 overlap by 4 nucleotidesPsest_1369 and Psest_1370 are separated by 109 nucleotides Psest_1365: Psest_1365 - Methyl-accepting chemotaxis protein, at 1,474,649 to 1,476,628 _1365 Psest_1366: Psest_1366 - hypothetical protein, at 1,476,850 to 1,477,059 _1366 Psest_1367: Psest_1367 - hypothetical protein, at 1,477,115 to 1,477,324 _1367 Psest_1368: Psest_1368 - Putative threonine efflux protein, at 1,477,404 to 1,477,991 _1368 Psest_1369: Psest_1369 - AraC-type DNA-binding domain-containing proteins, at 1,477,988 to 1,478,827 _1369 Psest_1370: Psest_1370 - hypothetical protein, at 1,478,937 to 1,479,362 _1370 Position (kb) 1477 1478Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1476.488 kb on + strandat 1476.489 kb on - strandat 1476.489 kb on - strandat 1476.675 kb on + strandat 1476.890 kb on + strand, within Psest_1366at 1476.890 kb on + strand, within Psest_1366at 1476.890 kb on + strand, within Psest_1366at 1477.093 kb on + strandat 1477.094 kb on - strandat 1477.104 kb on + strandat 1477.104 kb on + strandat 1477.104 kb on + strandat 1477.124 kb on + strandat 1477.124 kb on + strandat 1477.124 kb on + strandat 1477.124 kb on + strandat 1477.124 kb on + strandat 1477.124 kb on + strandat 1477.124 kb on + strandat 1477.124 kb on + strandat 1477.125 kb on - strandat 1477.125 kb on - strandat 1477.125 kb on - strandat 1477.125 kb on - strandat 1477.125 kb on - strandat 1477.125 kb on - strandat 1477.214 kb on + strand, within Psest_1367at 1477.214 kb on + strand, within Psest_1367at 1477.215 kb on - strand, within Psest_1367at 1477.215 kb on - strand, within Psest_1367at 1477.215 kb on - strand, within Psest_1367at 1477.215 kb on - strand, within Psest_1367at 1477.215 kb on - strand, within Psest_1367at 1477.215 kb on - strand, within Psest_1367at 1477.215 kb on - strand, within Psest_1367at 1477.246 kb on + strand, within Psest_1367at 1477.344 kb on + strandat 1477.344 kb on + strandat 1477.403 kb on + strandat 1477.403 kb on + strandat 1477.403 kb on + strandat 1477.403 kb on + strandat 1477.403 kb on + strandat 1477.403 kb on + strandat 1477.403 kb on + strandat 1477.403 kb on + strandat 1477.404 kb on - strandat 1477.404 kb on - strandat 1477.404 kb on - strandat 1477.404 kb on - strandat 1477.404 kb on - strandat 1477.413 kb on + strandat 1477.414 kb on - strandat 1477.414 kb on - strandat 1477.525 kb on + strand, within Psest_1368at 1477.525 kb on + strand, within Psest_1368at 1477.525 kb on + strand, within Psest_1368at 1477.526 kb on - strand, within Psest_1368at 1477.526 kb on - strand, within Psest_1368at 1477.581 kb on + strand, within Psest_1368at 1477.581 kb on + strand, within Psest_1368at 1477.582 kb on - strand, within Psest_1368at 1477.606 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.650 kb on + strand, within Psest_1368at 1477.651 kb on - strand, within Psest_1368at 1477.651 kb on - strand, within Psest_1368at 1477.652 kb on + strand, within Psest_1368at 1477.653 kb on - strand, within Psest_1368at 1477.839 kb on + strand, within Psest_1368at 1477.839 kb on + strand, within Psest_1368at 1477.839 kb on + strand, within Psest_1368at 1477.839 kb on + strand, within Psest_1368at 1477.840 kb on - strand, within Psest_1368at 1477.840 kb on - strand, within Psest_1368at 1477.902 kb on + strand, within Psest_1368at 1477.974 kb on + strandat 1477.974 kb on + strandat 1478.160 kb on + strand, within Psest_1369at 1478.160 kb on + strand, within Psest_1369at 1478.160 kb on + strand, within Psest_1369at 1478.161 kb on - strand, within Psest_1369at 1478.161 kb on - strand, within Psest_1369at 1478.161 kb on - strand, within Psest_1369at 1478.209 kb on - strand, within Psest_1369at 1478.280 kb on + strand, within Psest_1369at 1478.280 kb on + strand, within Psest_1369at 1478.280 kb on + strand, within Psest_1369at 1478.280 kb on + strand, within Psest_1369at 1478.280 kb on + strand, within Psest_1369at 1478.280 kb on + strand, within Psest_1369at 1478.280 kb on + strand, within Psest_1369at 1478.281 kb on - strand, within Psest_1369at 1478.281 kb on - strand, within Psest_1369at 1478.367 kb on + strand, within Psest_1369at 1478.368 kb on - strand, within Psest_1369at 1478.368 kb on - strand, within Psest_1369at 1478.428 kb on - strand, within Psest_1369at 1478.428 kb on - strand, within Psest_1369at 1478.428 kb on - strand, within Psest_1369at 1478.428 kb on - strand, within Psest_1369at 1478.429 kb on + strand, within Psest_1369at 1478.429 kb on + strand, within Psest_1369at 1478.429 kb on + strand, within Psest_1369at 1478.553 kb on + strand, within Psest_1369at 1478.553 kb on + strand, within Psest_1369at 1478.554 kb on - strand, within Psest_1369at 1478.554 kb on - strand, within Psest_1369at 1478.565 kb on + strand, within Psest_1369at 1478.566 kb on - strand, within Psest_1369at 1478.566 kb on - strand, within Psest_1369at 1478.566 kb on - strand, within Psest_1369at 1478.670 kb on + strand, within Psest_1369at 1478.670 kb on + strand, within Psest_1369at 1478.670 kb on + strand, within Psest_1369at 1478.670 kb on + strand, within Psest_1369at 1478.671 kb on - strand, within Psest_1369at 1478.671 kb on - strand, within Psest_1369at 1478.671 kb on - strand, within Psest_1369at 1478.865 kb on + strandat 1478.866 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml
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1,476,488 + +1.1
1,476,489 - +0.9
1,476,489 - +1.0
1,476,675 + -1.4
1,476,890 + Psest_1366 0.19 +0.5
1,476,890 + Psest_1366 0.19 -1.8
1,476,890 + Psest_1366 0.19 -0.2
1,477,093 + -0.6
1,477,094 - +1.7
1,477,104 + -0.2
1,477,104 + -0.2
1,477,104 + +0.4
1,477,124 + -1.1
1,477,124 + -0.6
1,477,124 + -0.4
1,477,124 + +0.8
1,477,124 + +0.6
1,477,124 + -0.6
1,477,124 + +0.8
1,477,124 + -0.6
1,477,125 - +0.1
1,477,125 - -0.1
1,477,125 - -0.3
1,477,125 - -0.2
1,477,125 - -1.0
1,477,125 - -0.4
1,477,214 + Psest_1367 0.47 +0.7
1,477,214 + Psest_1367 0.47 -0.4
1,477,215 - Psest_1367 0.48 -3.2
1,477,215 - Psest_1367 0.48 +0.5
1,477,215 - Psest_1367 0.48 -0.8
1,477,215 - Psest_1367 0.48 -0.4
1,477,215 - Psest_1367 0.48 +0.6
1,477,215 - Psest_1367 0.48 +1.2
1,477,215 - Psest_1367 0.48 +0.6
1,477,246 + Psest_1367 0.62 -1.0
1,477,344 + -0.6
1,477,344 + -0.1
1,477,403 + +0.7
1,477,403 + -0.4
1,477,403 + +1.2
1,477,403 + +1.6
1,477,403 + -0.2
1,477,403 + +1.5
1,477,403 + +0.7
1,477,403 + -1.9
1,477,404 - +0.3
1,477,404 - +0.0
1,477,404 - -0.2
1,477,404 - +0.3
1,477,404 - +0.0
1,477,413 + +2.8
1,477,414 - -0.9
1,477,414 - +0.5
1,477,525 + Psest_1368 0.21 +0.4
1,477,525 + Psest_1368 0.21 +1.1
1,477,525 + Psest_1368 0.21 -1.2
1,477,526 - Psest_1368 0.21 -1.0
1,477,526 - Psest_1368 0.21 +4.2
1,477,581 + Psest_1368 0.30 +0.0
1,477,581 + Psest_1368 0.30 +0.8
1,477,582 - Psest_1368 0.30 -1.6
1,477,606 + Psest_1368 0.34 +0.7
1,477,650 + Psest_1368 0.42 +1.0
1,477,650 + Psest_1368 0.42 -0.2
1,477,650 + Psest_1368 0.42 +0.5
1,477,650 + Psest_1368 0.42 -0.4
1,477,650 + Psest_1368 0.42 -0.3
1,477,650 + Psest_1368 0.42 -0.9
1,477,650 + Psest_1368 0.42 -0.3
1,477,650 + Psest_1368 0.42 -0.1
1,477,650 + Psest_1368 0.42 -0.4
1,477,650 + Psest_1368 0.42 +0.5
1,477,651 - Psest_1368 0.42 -2.0
1,477,651 - Psest_1368 0.42 -0.0
1,477,652 + Psest_1368 0.42 -1.6
1,477,653 - Psest_1368 0.42 -0.4
1,477,839 + Psest_1368 0.74 -0.0
1,477,839 + Psest_1368 0.74 -0.5
1,477,839 + Psest_1368 0.74 +0.8
1,477,839 + Psest_1368 0.74 -2.0
1,477,840 - Psest_1368 0.74 -0.6
1,477,840 - Psest_1368 0.74 -0.3
1,477,902 + Psest_1368 0.85 -0.6
1,477,974 + -0.9
1,477,974 + +1.5
1,478,160 + Psest_1369 0.20 +2.4
1,478,160 + Psest_1369 0.20 -2.5
1,478,160 + Psest_1369 0.20 +0.2
1,478,161 - Psest_1369 0.21 +1.2
1,478,161 - Psest_1369 0.21 +0.1
1,478,161 - Psest_1369 0.21 -0.8
1,478,209 - Psest_1369 0.26 -1.8
1,478,280 + Psest_1369 0.35 +0.2
1,478,280 + Psest_1369 0.35 +0.5
1,478,280 + Psest_1369 0.35 +1.6
1,478,280 + Psest_1369 0.35 +1.1
1,478,280 + Psest_1369 0.35 -0.1
1,478,280 + Psest_1369 0.35 +0.2
1,478,280 + Psest_1369 0.35 -0.3
1,478,281 - Psest_1369 0.35 -0.9
1,478,281 - Psest_1369 0.35 +2.4
1,478,367 + Psest_1369 0.45 -0.2
1,478,368 - Psest_1369 0.45 -1.7
1,478,368 - Psest_1369 0.45 -0.5
1,478,428 - Psest_1369 0.52 +1.4
1,478,428 - Psest_1369 0.52 -0.8
1,478,428 - Psest_1369 0.52 +0.8
1,478,428 - Psest_1369 0.52 -1.4
1,478,429 + Psest_1369 0.53 +1.4
1,478,429 + Psest_1369 0.53 -0.3
1,478,429 + Psest_1369 0.53 +0.6
1,478,553 + Psest_1369 0.67 +0.3
1,478,553 + Psest_1369 0.67 -0.3
1,478,554 - Psest_1369 0.67 +1.8
1,478,554 - Psest_1369 0.67 -2.3
1,478,565 + Psest_1369 0.69 +1.2
1,478,566 - Psest_1369 0.69 +0.1
1,478,566 - Psest_1369 0.69 +0.3
1,478,566 - Psest_1369 0.69 -0.8
1,478,670 + Psest_1369 0.81 -0.5
1,478,670 + Psest_1369 0.81 +0.8
1,478,670 + Psest_1369 0.81 +1.3
1,478,670 + Psest_1369 0.81 +1.7
1,478,671 - Psest_1369 0.81 -0.9
1,478,671 - Psest_1369 0.81 +0.3
1,478,671 - Psest_1369 0.81 -2.5
1,478,865 + +1.0
1,478,866 - +0.1

Or see this region's nucleotide sequence