Experiment: Fusidic 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1281 and Psest_1282 are separated by 83 nucleotides Psest_1282 and Psest_1283 are separated by 23 nucleotides Psest_1283 and Psest_1284 are separated by 103 nucleotides
Psest_1281: Psest_1281 - Small-conductance mechanosensitive channel, at 1,385,350 to 1,386,669
_1281
Psest_1282: Psest_1282 - Amidases related to nicotinamidase, at 1,386,753 to 1,387,295
_1282
Psest_1283: Psest_1283 - Membrane proteins related to metalloendopeptidases, at 1,387,319 to 1,388,143
_1283
Psest_1284: Psest_1284 - exodeoxyribonuclease VII, large subunit, at 1,388,247 to 1,389,623
_1284
Position (kb)
1386
1387
1388 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1385.779 kb on + strand, within Psest_1281 at 1385.779 kb on + strand, within Psest_1281 at 1385.779 kb on + strand, within Psest_1281 at 1385.780 kb on - strand, within Psest_1281 at 1385.780 kb on - strand, within Psest_1281 at 1385.882 kb on + strand, within Psest_1281 at 1385.882 kb on + strand, within Psest_1281 at 1386.240 kb on - strand, within Psest_1281 at 1386.267 kb on - strand, within Psest_1281 at 1386.308 kb on + strand, within Psest_1281 at 1386.309 kb on - strand, within Psest_1281 at 1386.531 kb on - strand, within Psest_1281 at 1386.674 kb on + strand at 1386.674 kb on + strand at 1386.675 kb on - strand at 1386.675 kb on - strand at 1386.675 kb on - strand at 1387.139 kb on - strand, within Psest_1282 at 1387.179 kb on + strand, within Psest_1282 at 1387.180 kb on - strand, within Psest_1282 at 1387.330 kb on - strand at 1387.330 kb on - strand at 1387.548 kb on + strand, within Psest_1283 at 1387.548 kb on + strand, within Psest_1283 at 1387.548 kb on + strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.549 kb on - strand, within Psest_1283 at 1387.563 kb on - strand, within Psest_1283 at 1387.746 kb on + strand, within Psest_1283 at 1388.059 kb on + strand, within Psest_1283 at 1388.249 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.016 mg/ml remove 1,385,779 + Psest_1281 0.33 +0.5 1,385,779 + Psest_1281 0.33 -2.0 1,385,779 + Psest_1281 0.33 -0.4 1,385,780 - Psest_1281 0.33 +0.5 1,385,780 - Psest_1281 0.33 -0.8 1,385,882 + Psest_1281 0.40 -1.8 1,385,882 + Psest_1281 0.40 +0.1 1,386,240 - Psest_1281 0.67 -1.0 1,386,267 - Psest_1281 0.69 -1.1 1,386,308 + Psest_1281 0.73 -1.8 1,386,309 - Psest_1281 0.73 -0.3 1,386,531 - Psest_1281 0.89 -0.2 1,386,674 + +0.1 1,386,674 + -0.5 1,386,675 - -0.9 1,386,675 - +0.9 1,386,675 - -1.9 1,387,139 - Psest_1282 0.71 +0.5 1,387,179 + Psest_1282 0.78 +1.3 1,387,180 - Psest_1282 0.79 +1.5 1,387,330 - -0.1 1,387,330 - -1.3 1,387,548 + Psest_1283 0.28 -1.6 1,387,548 + Psest_1283 0.28 +1.8 1,387,548 + Psest_1283 0.28 +0.4 1,387,549 - Psest_1283 0.28 -0.6 1,387,549 - Psest_1283 0.28 -3.3 1,387,549 - Psest_1283 0.28 +1.2 1,387,549 - Psest_1283 0.28 -0.5 1,387,549 - Psest_1283 0.28 -2.4 1,387,563 - Psest_1283 0.30 +0.6 1,387,746 + Psest_1283 0.52 -0.3 1,388,059 + Psest_1283 0.90 -0.4 1,388,249 - +1.9
Or see this region's nucleotide sequence