Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0555

Experiment: Bacitracin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0554 and Psest_0555 are separated by 69 nucleotidesPsest_0555 and Psest_0556 are separated by 329 nucleotides Psest_0554: Psest_0554 - Signal transduction histidine kinase, at 606,943 to 608,124 _0554 Psest_0555: Psest_0555 - Cytosine/uracil/thiamine/allantoin permeases, at 608,194 to 609,666 _0555 Psest_0556: Psest_0556 - Curlin associated repeat., at 609,996 to 610,724 _0556 Position (kb) 608 609 610Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 607.360 kb on + strand, within Psest_0554at 607.360 kb on + strand, within Psest_0554at 607.360 kb on + strand, within Psest_0554at 607.361 kb on - strand, within Psest_0554at 607.403 kb on - strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.809 kb on + strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.810 kb on - strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.811 kb on + strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.812 kb on - strand, within Psest_0554at 607.826 kb on + strand, within Psest_0554at 607.826 kb on + strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554at 607.827 kb on - strand, within Psest_0554at 608.163 kb on + strandat 608.163 kb on + strandat 608.163 kb on + strandat 608.164 kb on - strandat 608.255 kb on + strandat 608.255 kb on + strandat 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.405 kb on + strand, within Psest_0555at 608.406 kb on - strand, within Psest_0555at 608.406 kb on - strand, within Psest_0555at 608.406 kb on - strand, within Psest_0555at 608.468 kb on + strand, within Psest_0555at 608.468 kb on + strand, within Psest_0555at 608.468 kb on + strand, within Psest_0555at 608.469 kb on - strand, within Psest_0555at 608.471 kb on + strand, within Psest_0555at 608.472 kb on - strand, within Psest_0555at 608.472 kb on - strand, within Psest_0555at 608.654 kb on + strand, within Psest_0555at 608.654 kb on + strand, within Psest_0555at 608.654 kb on + strand, within Psest_0555at 608.655 kb on - strand, within Psest_0555at 608.655 kb on - strand, within Psest_0555at 608.919 kb on - strand, within Psest_0555at 608.942 kb on + strand, within Psest_0555at 608.942 kb on + strand, within Psest_0555at 608.942 kb on + strand, within Psest_0555at 608.943 kb on - strand, within Psest_0555at 608.943 kb on - strand, within Psest_0555at 608.943 kb on - strand, within Psest_0555at 609.092 kb on + strand, within Psest_0555at 609.092 kb on + strand, within Psest_0555at 609.092 kb on + strand, within Psest_0555at 609.093 kb on - strand, within Psest_0555at 609.158 kb on - strand, within Psest_0555at 609.182 kb on + strand, within Psest_0555at 609.183 kb on - strand, within Psest_0555at 609.284 kb on + strand, within Psest_0555at 609.284 kb on + strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.285 kb on - strand, within Psest_0555at 609.395 kb on + strand, within Psest_0555at 609.396 kb on - strand, within Psest_0555at 609.396 kb on - strand, within Psest_0555at 609.396 kb on - strand, within Psest_0555at 609.492 kb on - strand, within Psest_0555at 609.562 kb on + strandat 609.562 kb on + strandat 609.563 kb on - strandat 609.619 kb on - strandat 609.620 kb on + strandat 609.620 kb on + strandat 609.620 kb on + strandat 609.620 kb on + strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.621 kb on - strandat 609.786 kb on + strandat 609.787 kb on - strandat 609.787 kb on - strandat 609.787 kb on - strandat 609.820 kb on + strandat 609.936 kb on + strandat 609.997 kb on + strandat 609.998 kb on - strandat 610.052 kb on - strandat 610.429 kb on + strand, within Psest_0556at 610.430 kb on - strand, within Psest_0556at 610.573 kb on + strand, within Psest_0556at 610.573 kb on + strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.574 kb on - strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.579 kb on + strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.580 kb on - strand, within Psest_0556at 610.606 kb on + strand, within Psest_0556

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
remove
607,360 + Psest_0554 0.35 -0.3
607,360 + Psest_0554 0.35 +1.1
607,360 + Psest_0554 0.35 +0.8
607,361 - Psest_0554 0.35 -0.0
607,403 - Psest_0554 0.39 +0.3
607,809 + Psest_0554 0.73 -2.1
607,809 + Psest_0554 0.73 +1.4
607,809 + Psest_0554 0.73 +0.3
607,809 + Psest_0554 0.73 +1.2
607,809 + Psest_0554 0.73 -2.2
607,809 + Psest_0554 0.73 +1.8
607,809 + Psest_0554 0.73 -0.4
607,809 + Psest_0554 0.73 +0.6
607,810 - Psest_0554 0.73 +1.3
607,810 - Psest_0554 0.73 +1.3
607,810 - Psest_0554 0.73 -0.5
607,810 - Psest_0554 0.73 -1.6
607,811 + Psest_0554 0.73 -1.2
607,811 + Psest_0554 0.73 -0.1
607,811 + Psest_0554 0.73 -0.4
607,811 + Psest_0554 0.73 +0.3
607,811 + Psest_0554 0.73 -0.4
607,811 + Psest_0554 0.73 -0.7
607,811 + Psest_0554 0.73 -1.9
607,811 + Psest_0554 0.73 -0.4
607,811 + Psest_0554 0.73 +0.4
607,811 + Psest_0554 0.73 +0.7
607,811 + Psest_0554 0.73 -0.8
607,811 + Psest_0554 0.73 -1.0
607,811 + Psest_0554 0.73 -0.9
607,811 + Psest_0554 0.73 -0.1
607,811 + Psest_0554 0.73 -0.2
607,811 + Psest_0554 0.73 -0.4
607,812 - Psest_0554 0.74 +1.0
607,812 - Psest_0554 0.74 -0.7
607,812 - Psest_0554 0.74 +1.1
607,812 - Psest_0554 0.74 -0.0
607,812 - Psest_0554 0.74 +0.2
607,812 - Psest_0554 0.74 +1.1
607,812 - Psest_0554 0.74 -1.1
607,826 + Psest_0554 0.75 -0.6
607,826 + Psest_0554 0.75 +1.3
607,827 - Psest_0554 0.75 -0.7
607,827 - Psest_0554 0.75 +2.0
607,827 - Psest_0554 0.75 -0.6
608,163 + -0.2
608,163 + +0.9
608,163 + -0.3
608,164 - +1.7
608,255 + -0.0
608,255 + -0.3
608,405 + Psest_0555 0.14 +0.4
608,405 + Psest_0555 0.14 +0.3
608,405 + Psest_0555 0.14 -0.7
608,405 + Psest_0555 0.14 -0.6
608,405 + Psest_0555 0.14 -0.2
608,405 + Psest_0555 0.14 -0.8
608,406 - Psest_0555 0.14 +0.8
608,406 - Psest_0555 0.14 +1.5
608,406 - Psest_0555 0.14 -1.0
608,468 + Psest_0555 0.19 +0.5
608,468 + Psest_0555 0.19 -2.9
608,468 + Psest_0555 0.19 -0.2
608,469 - Psest_0555 0.19 -0.7
608,471 + Psest_0555 0.19 -0.8
608,472 - Psest_0555 0.19 -0.2
608,472 - Psest_0555 0.19 -0.6
608,654 + Psest_0555 0.31 -0.2
608,654 + Psest_0555 0.31 -0.9
608,654 + Psest_0555 0.31 -0.1
608,655 - Psest_0555 0.31 -1.2
608,655 - Psest_0555 0.31 -1.9
608,919 - Psest_0555 0.49 +0.3
608,942 + Psest_0555 0.51 -0.1
608,942 + Psest_0555 0.51 -0.9
608,942 + Psest_0555 0.51 -0.8
608,943 - Psest_0555 0.51 +0.2
608,943 - Psest_0555 0.51 -0.2
608,943 - Psest_0555 0.51 -0.3
609,092 + Psest_0555 0.61 +2.0
609,092 + Psest_0555 0.61 -0.5
609,092 + Psest_0555 0.61 +0.4
609,093 - Psest_0555 0.61 +1.6
609,158 - Psest_0555 0.65 -1.0
609,182 + Psest_0555 0.67 -0.2
609,183 - Psest_0555 0.67 +0.6
609,284 + Psest_0555 0.74 +1.7
609,284 + Psest_0555 0.74 -0.3
609,285 - Psest_0555 0.74 +0.4
609,285 - Psest_0555 0.74 -4.1
609,285 - Psest_0555 0.74 +0.2
609,285 - Psest_0555 0.74 -2.3
609,285 - Psest_0555 0.74 -1.7
609,285 - Psest_0555 0.74 -2.3
609,285 - Psest_0555 0.74 -0.3
609,285 - Psest_0555 0.74 -1.8
609,285 - Psest_0555 0.74 +0.4
609,395 + Psest_0555 0.82 -1.8
609,396 - Psest_0555 0.82 -0.2
609,396 - Psest_0555 0.82 -2.3
609,396 - Psest_0555 0.82 -0.0
609,492 - Psest_0555 0.88 -0.4
609,562 + -0.0
609,562 + -0.5
609,563 - -1.3
609,619 - -0.1
609,620 + -2.1
609,620 + +0.7
609,620 + -2.8
609,620 + +0.7
609,621 - -1.0
609,621 - -1.9
609,621 - -0.6
609,621 - -1.2
609,621 - -0.9
609,621 - +0.7
609,621 - -0.8
609,621 - +0.3
609,621 - +1.1
609,621 - -1.0
609,621 - +2.1
609,621 - +1.6
609,786 + -0.6
609,787 - +0.3
609,787 - +0.4
609,787 - -0.5
609,820 + -1.7
609,936 + -0.3
609,997 + -0.8
609,998 - -0.6
610,052 - -1.6
610,429 + Psest_0556 0.59 -0.3
610,430 - Psest_0556 0.60 +0.4
610,573 + Psest_0556 0.79 +0.5
610,573 + Psest_0556 0.79 -0.9
610,574 - Psest_0556 0.79 +0.8
610,574 - Psest_0556 0.79 -0.6
610,574 - Psest_0556 0.79 -1.3
610,574 - Psest_0556 0.79 -1.7
610,574 - Psest_0556 0.79 +1.6
610,579 + Psest_0556 0.80 -0.6
610,579 + Psest_0556 0.80 +0.5
610,579 + Psest_0556 0.80 -1.2
610,579 + Psest_0556 0.80 -0.4
610,579 + Psest_0556 0.80 +0.6
610,579 + Psest_0556 0.80 +0.2
610,579 + Psest_0556 0.80 +0.7
610,579 + Psest_0556 0.80 -0.8
610,579 + Psest_0556 0.80 -1.2
610,579 + Psest_0556 0.80 +1.1
610,579 + Psest_0556 0.80 -1.5
610,580 - Psest_0556 0.80 +0.5
610,580 - Psest_0556 0.80 +1.8
610,580 - Psest_0556 0.80 +1.1
610,580 - Psest_0556 0.80 +1.0
610,580 - Psest_0556 0.80 -0.9
610,580 - Psest_0556 0.80 +0.3
610,580 - Psest_0556 0.80 -3.0
610,606 + Psest_0556 0.84 +1.0

Or see this region's nucleotide sequence