Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3511 and Psest_3512 overlap by 11 nucleotides Psest_3512 and Psest_3513 overlap by 1 nucleotides Psest_3513 and Psest_3514 are separated by 164 nucleotides
Psest_3511: Psest_3511 - Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) , at 3,687,005 to 3,687,664
_3511
Psest_3512: Psest_3512 - fumarylacetoacetate (FAA) hydrolase (EC 3.7.1.2) (from data) , at 3,687,654 to 3,688,637
_3512
Psest_3513: Psest_3513 - Homogentisate 1,2-dioxygenase (EC 1.13.11.5) (from data) , at 3,688,637 to 3,689,776
_3513
Psest_3514: Psest_3514 - 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (from data) , at 3,689,941 to 3,691,026
_3514
Position (kb)
3688
3689
3690 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3687.664 kb on + strand at 3687.835 kb on + strand, within Psest_3512 at 3687.835 kb on + strand, within Psest_3512 at 3687.835 kb on + strand, within Psest_3512 at 3688.020 kb on + strand, within Psest_3512 at 3688.020 kb on + strand, within Psest_3512 at 3688.075 kb on + strand, within Psest_3512 at 3688.075 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.300 kb on + strand, within Psest_3512 at 3688.301 kb on - strand, within Psest_3512 at 3688.378 kb on + strand, within Psest_3512 at 3688.379 kb on - strand, within Psest_3512 at 3688.379 kb on - strand, within Psest_3512 at 3688.379 kb on - strand, within Psest_3512 at 3688.403 kb on - strand, within Psest_3512 at 3688.510 kb on + strand, within Psest_3512 at 3688.510 kb on + strand, within Psest_3512 at 3688.510 kb on + strand, within Psest_3512 at 3688.511 kb on - strand, within Psest_3512 at 3688.511 kb on - strand, within Psest_3512 at 3688.674 kb on + strand at 3688.674 kb on + strand at 3688.674 kb on + strand at 3688.674 kb on + strand at 3688.675 kb on - strand at 3688.885 kb on - strand, within Psest_3513 at 3688.885 kb on - strand, within Psest_3513 at 3689.075 kb on + strand, within Psest_3513 at 3689.122 kb on - strand, within Psest_3513 at 3689.122 kb on - strand, within Psest_3513 at 3689.127 kb on + strand, within Psest_3513 at 3689.127 kb on + strand, within Psest_3513 at 3689.371 kb on - strand, within Psest_3513 at 3689.409 kb on + strand, within Psest_3513 at 3689.410 kb on - strand, within Psest_3513 at 3689.694 kb on + strand at 3689.694 kb on + strand at 3689.694 kb on + strand at 3689.694 kb on + strand at 3689.694 kb on + strand at 3689.694 kb on + strand at 3689.694 kb on + strand at 3689.694 kb on + strand at 3689.695 kb on - strand at 3689.834 kb on + strand at 3689.834 kb on + strand at 3689.917 kb on - strand at 3689.942 kb on + strand at 3689.942 kb on + strand at 3689.942 kb on + strand at 3689.942 kb on + strand at 3689.942 kb on + strand at 3689.942 kb on + strand at 3689.943 kb on - strand at 3689.943 kb on - strand at 3690.200 kb on + strand, within Psest_3514 at 3690.200 kb on + strand, within Psest_3514 at 3690.200 kb on + strand, within Psest_3514 at 3690.200 kb on + strand, within Psest_3514 at 3690.203 kb on + strand, within Psest_3514 at 3690.203 kb on + strand, within Psest_3514 at 3690.203 kb on + strand, within Psest_3514 at 3690.203 kb on + strand, within Psest_3514 at 3690.203 kb on + strand, within Psest_3514 at 3690.204 kb on - strand, within Psest_3514 at 3690.204 kb on - strand, within Psest_3514 at 3690.204 kb on - strand, within Psest_3514 at 3690.204 kb on - strand, within Psest_3514 at 3690.204 kb on - strand, within Psest_3514 at 3690.204 kb on - strand, within Psest_3514 at 3690.263 kb on + strand, within Psest_3514 at 3690.263 kb on + strand, within Psest_3514 at 3690.264 kb on - strand, within Psest_3514 at 3690.264 kb on - strand, within Psest_3514 at 3690.264 kb on - strand, within Psest_3514 at 3690.264 kb on - strand, within Psest_3514 at 3690.264 kb on - strand, within Psest_3514 at 3690.264 kb on - strand, within Psest_3514 at 3690.264 kb on - strand, within Psest_3514 at 3690.267 kb on + strand, within Psest_3514 at 3690.441 kb on - strand, within Psest_3514 at 3690.473 kb on + strand, within Psest_3514 at 3690.474 kb on - strand, within Psest_3514 at 3690.578 kb on + strand, within Psest_3514 at 3690.579 kb on - strand, within Psest_3514 at 3690.579 kb on - strand, within Psest_3514 at 3690.596 kb on + strand, within Psest_3514 at 3690.596 kb on + strand, within Psest_3514 at 3690.596 kb on + strand, within Psest_3514 at 3690.596 kb on + strand, within Psest_3514 at 3690.596 kb on + strand, within Psest_3514 at 3690.597 kb on - strand, within Psest_3514 at 3690.597 kb on - strand, within Psest_3514 at 3690.597 kb on - strand, within Psest_3514 at 3690.597 kb on - strand, within Psest_3514 at 3690.597 kb on - strand, within Psest_3514 at 3690.597 kb on - strand, within Psest_3514 at 3690.629 kb on + strand, within Psest_3514 at 3690.629 kb on + strand, within Psest_3514 at 3690.630 kb on - strand, within Psest_3514 at 3690.630 kb on - strand, within Psest_3514
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,687,664 + -0.3 3,687,835 + Psest_3512 0.18 -0.1 3,687,835 + Psest_3512 0.18 +0.3 3,687,835 + Psest_3512 0.18 -1.0 3,688,020 + Psest_3512 0.37 +0.5 3,688,020 + Psest_3512 0.37 -1.5 3,688,075 + Psest_3512 0.43 -0.0 3,688,075 + Psest_3512 0.43 +0.2 3,688,300 + Psest_3512 0.66 -1.4 3,688,300 + Psest_3512 0.66 -0.2 3,688,300 + Psest_3512 0.66 -0.8 3,688,300 + Psest_3512 0.66 -0.1 3,688,300 + Psest_3512 0.66 -3.1 3,688,301 - Psest_3512 0.66 -1.2 3,688,378 + Psest_3512 0.74 -0.6 3,688,379 - Psest_3512 0.74 -0.8 3,688,379 - Psest_3512 0.74 +0.3 3,688,379 - Psest_3512 0.74 +0.4 3,688,403 - Psest_3512 0.76 -0.3 3,688,510 + Psest_3512 0.87 +0.9 3,688,510 + Psest_3512 0.87 -0.1 3,688,510 + Psest_3512 0.87 +1.5 3,688,511 - Psest_3512 0.87 +1.0 3,688,511 - Psest_3512 0.87 +0.2 3,688,674 + -0.9 3,688,674 + -0.5 3,688,674 + -0.5 3,688,674 + +1.1 3,688,675 - -0.2 3,688,885 - Psest_3513 0.22 -0.3 3,688,885 - Psest_3513 0.22 +0.5 3,689,075 + Psest_3513 0.38 -0.1 3,689,122 - Psest_3513 0.43 -0.2 3,689,122 - Psest_3513 0.43 +0.9 3,689,127 + Psest_3513 0.43 +0.5 3,689,127 + Psest_3513 0.43 -1.1 3,689,371 - Psest_3513 0.64 -0.6 3,689,409 + Psest_3513 0.68 +0.8 3,689,410 - Psest_3513 0.68 +0.1 3,689,694 + -0.4 3,689,694 + +1.0 3,689,694 + -0.7 3,689,694 + -2.0 3,689,694 + +0.9 3,689,694 + -1.8 3,689,694 + +0.9 3,689,694 + +0.4 3,689,695 - +1.9 3,689,834 + +0.6 3,689,834 + +0.8 3,689,917 - +0.2 3,689,942 + -0.6 3,689,942 + +0.5 3,689,942 + -0.5 3,689,942 + -0.1 3,689,942 + -2.0 3,689,942 + -0.2 3,689,943 - +0.5 3,689,943 - -0.1 3,690,200 + Psest_3514 0.24 +0.6 3,690,200 + Psest_3514 0.24 +1.2 3,690,200 + Psest_3514 0.24 +0.4 3,690,200 + Psest_3514 0.24 +0.4 3,690,203 + Psest_3514 0.24 -1.3 3,690,203 + Psest_3514 0.24 -0.7 3,690,203 + Psest_3514 0.24 -1.9 3,690,203 + Psest_3514 0.24 +1.3 3,690,203 + Psest_3514 0.24 +0.2 3,690,204 - Psest_3514 0.24 +2.3 3,690,204 - Psest_3514 0.24 -1.4 3,690,204 - Psest_3514 0.24 +0.3 3,690,204 - Psest_3514 0.24 -1.2 3,690,204 - Psest_3514 0.24 +0.9 3,690,204 - Psest_3514 0.24 +1.8 3,690,263 + Psest_3514 0.30 -1.3 3,690,263 + Psest_3514 0.30 +0.4 3,690,264 - Psest_3514 0.30 -0.6 3,690,264 - Psest_3514 0.30 +0.7 3,690,264 - Psest_3514 0.30 -1.6 3,690,264 - Psest_3514 0.30 -0.4 3,690,264 - Psest_3514 0.30 -0.2 3,690,264 - Psest_3514 0.30 +0.4 3,690,264 - Psest_3514 0.30 -1.1 3,690,267 + Psest_3514 0.30 -2.5 3,690,441 - Psest_3514 0.46 +1.4 3,690,473 + Psest_3514 0.49 -1.0 3,690,474 - Psest_3514 0.49 +0.3 3,690,578 + Psest_3514 0.59 -0.5 3,690,579 - Psest_3514 0.59 -1.8 3,690,579 - Psest_3514 0.59 +0.6 3,690,596 + Psest_3514 0.60 -0.8 3,690,596 + Psest_3514 0.60 +0.9 3,690,596 + Psest_3514 0.60 -0.7 3,690,596 + Psest_3514 0.60 +0.6 3,690,596 + Psest_3514 0.60 +1.0 3,690,597 - Psest_3514 0.60 +0.8 3,690,597 - Psest_3514 0.60 -1.5 3,690,597 - Psest_3514 0.60 +1.0 3,690,597 - Psest_3514 0.60 +1.3 3,690,597 - Psest_3514 0.60 +0.2 3,690,597 - Psest_3514 0.60 -3.4 3,690,629 + Psest_3514 0.63 -1.5 3,690,629 + Psest_3514 0.63 -2.5 3,690,630 - Psest_3514 0.63 -1.0 3,690,630 - Psest_3514 0.63 -1.8
Or see this region's nucleotide sequence