Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2928 and Psest_2929 are separated by 6 nucleotides Psest_2929 and Psest_2930 are separated by 64 nucleotides
Psest_2928: Psest_2928 - Subtilisin-like serine proteases, at 3,122,213 to 3,123,991
_2928
Psest_2929: Psest_2929 - Transcriptional regulators, at 3,123,998 to 3,124,471
_2929
Psest_2930: Psest_2930 - asparagine synthase (glutamine-hydrolyzing), at 3,124,536 to 3,126,419
_2930
Position (kb)
3123
3124
3125 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3123.041 kb on + strand, within Psest_2928 at 3123.041 kb on + strand, within Psest_2928 at 3123.041 kb on + strand, within Psest_2928 at 3123.393 kb on - strand, within Psest_2928 at 3123.523 kb on + strand, within Psest_2928 at 3123.717 kb on - strand, within Psest_2928 at 3123.990 kb on - strand at 3124.495 kb on - strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.646 kb on + strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.647 kb on - strand at 3124.657 kb on + strand at 3124.658 kb on - strand at 3124.658 kb on - strand at 3124.881 kb on + strand, within Psest_2930 at 3124.881 kb on + strand, within Psest_2930 at 3124.881 kb on + strand, within Psest_2930 at 3124.881 kb on + strand, within Psest_2930 at 3124.881 kb on + strand, within Psest_2930 at 3124.881 kb on + strand, within Psest_2930 at 3124.881 kb on + strand, within Psest_2930 at 3124.882 kb on - strand, within Psest_2930 at 3124.882 kb on - strand, within Psest_2930 at 3124.882 kb on - strand, within Psest_2930 at 3124.882 kb on - strand, within Psest_2930 at 3125.039 kb on + strand, within Psest_2930 at 3125.088 kb on + strand, within Psest_2930 at 3125.088 kb on + strand, within Psest_2930 at 3125.088 kb on + strand, within Psest_2930 at 3125.193 kb on + strand, within Psest_2930 at 3125.193 kb on + strand, within Psest_2930 at 3125.193 kb on + strand, within Psest_2930 at 3125.193 kb on + strand, within Psest_2930 at 3125.193 kb on + strand, within Psest_2930 at 3125.194 kb on - strand, within Psest_2930 at 3125.194 kb on - strand, within Psest_2930 at 3125.194 kb on - strand, within Psest_2930 at 3125.194 kb on - strand, within Psest_2930 at 3125.352 kb on + strand, within Psest_2930 at 3125.352 kb on + strand, within Psest_2930 at 3125.352 kb on + strand, within Psest_2930 at 3125.353 kb on - strand, within Psest_2930 at 3125.353 kb on - strand, within Psest_2930 at 3125.353 kb on - strand, within Psest_2930
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,123,041 + Psest_2928 0.47 -0.3 3,123,041 + Psest_2928 0.47 -1.7 3,123,041 + Psest_2928 0.47 -2.2 3,123,393 - Psest_2928 0.66 -1.1 3,123,523 + Psest_2928 0.74 -0.7 3,123,717 - Psest_2928 0.85 -1.2 3,123,990 - -0.1 3,124,495 - -0.8 3,124,646 + -0.1 3,124,646 + +1.0 3,124,646 + +0.9 3,124,646 + +2.0 3,124,646 + +0.8 3,124,646 + +2.2 3,124,646 + -0.9 3,124,646 + -1.4 3,124,646 + -0.5 3,124,646 + -0.1 3,124,646 + -1.1 3,124,646 + +0.5 3,124,646 + +2.7 3,124,647 - -0.3 3,124,647 - +1.1 3,124,647 - -0.3 3,124,647 - +0.5 3,124,647 - -0.7 3,124,647 - -1.5 3,124,647 - +0.4 3,124,647 - +1.5 3,124,647 - -0.5 3,124,647 - -1.3 3,124,647 - +0.6 3,124,647 - -0.8 3,124,647 - +1.6 3,124,647 - -0.8 3,124,657 + -0.8 3,124,658 - -0.3 3,124,658 - -1.7 3,124,881 + Psest_2930 0.18 -2.0 3,124,881 + Psest_2930 0.18 -0.8 3,124,881 + Psest_2930 0.18 +1.0 3,124,881 + Psest_2930 0.18 -2.1 3,124,881 + Psest_2930 0.18 +0.4 3,124,881 + Psest_2930 0.18 +0.6 3,124,881 + Psest_2930 0.18 +0.1 3,124,882 - Psest_2930 0.18 +0.8 3,124,882 - Psest_2930 0.18 +1.2 3,124,882 - Psest_2930 0.18 -1.7 3,124,882 - Psest_2930 0.18 +1.4 3,125,039 + Psest_2930 0.27 +0.9 3,125,088 + Psest_2930 0.29 -0.9 3,125,088 + Psest_2930 0.29 -1.4 3,125,088 + Psest_2930 0.29 +0.5 3,125,193 + Psest_2930 0.35 +0.5 3,125,193 + Psest_2930 0.35 +0.6 3,125,193 + Psest_2930 0.35 -0.8 3,125,193 + Psest_2930 0.35 +1.4 3,125,193 + Psest_2930 0.35 +0.8 3,125,194 - Psest_2930 0.35 +2.0 3,125,194 - Psest_2930 0.35 -1.1 3,125,194 - Psest_2930 0.35 +2.2 3,125,194 - Psest_2930 0.35 -0.0 3,125,352 + Psest_2930 0.43 -0.1 3,125,352 + Psest_2930 0.43 -0.1 3,125,352 + Psest_2930 0.43 -0.8 3,125,353 - Psest_2930 0.43 +1.5 3,125,353 - Psest_2930 0.43 +0.6 3,125,353 - Psest_2930 0.43 -0.1
Or see this region's nucleotide sequence