Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2181 and Psest_2182 are separated by 175 nucleotides Psest_2182 and Psest_2183 are separated by 217 nucleotides Psest_2183 and Psest_2184 are separated by 19 nucleotides
Psest_2181: Psest_2181 - Protein of unknown function (DUF1615)., at 2,338,175 to 2,339,341
_2181
Psest_2182: Psest_2182 - Protein of unknown function (DUF2790)., at 2,339,517 to 2,339,819
_2182
Psest_2183: Psest_2183 - Transcriptional regulator, at 2,340,037 to 2,340,972
_2183
Psest_2184: Psest_2184 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,340,992 to 2,342,464
_2184
Position (kb)
2340
2341 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2339.097 kb on + strand, within Psest_2181 at 2339.097 kb on + strand, within Psest_2181 at 2339.097 kb on + strand, within Psest_2181 at 2339.097 kb on + strand, within Psest_2181 at 2339.098 kb on - strand, within Psest_2181 at 2339.098 kb on - strand, within Psest_2181 at 2339.098 kb on - strand, within Psest_2181 at 2339.098 kb on - strand, within Psest_2181 at 2339.380 kb on + strand at 2339.380 kb on + strand at 2339.381 kb on - strand at 2339.551 kb on + strand, within Psest_2182 at 2339.552 kb on - strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.629 kb on - strand, within Psest_2182 at 2339.629 kb on - strand, within Psest_2182 at 2339.671 kb on + strand, within Psest_2182 at 2339.672 kb on - strand, within Psest_2182 at 2339.677 kb on + strand, within Psest_2182 at 2339.702 kb on - strand, within Psest_2182 at 2339.757 kb on + strand, within Psest_2182 at 2339.757 kb on + strand, within Psest_2182 at 2339.758 kb on - strand, within Psest_2182 at 2339.852 kb on + strand at 2339.852 kb on + strand at 2339.852 kb on + strand at 2339.943 kb on - strand at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.632 kb on + strand, within Psest_2183 at 2340.633 kb on - strand, within Psest_2183 at 2340.633 kb on - strand, within Psest_2183 at 2340.678 kb on + strand, within Psest_2183 at 2340.679 kb on - strand, within Psest_2183 at 2340.978 kb on - strand at 2341.194 kb on + strand, within Psest_2184 at 2341.279 kb on - strand, within Psest_2184 at 2341.710 kb on + strand, within Psest_2184 at 2341.710 kb on + strand, within Psest_2184 at 2341.710 kb on + strand, within Psest_2184 at 2341.711 kb on - strand, within Psest_2184 at 2341.911 kb on + strand, within Psest_2184 at 2341.911 kb on + strand, within Psest_2184 at 2341.911 kb on + strand, within Psest_2184 at 2341.911 kb on + strand, within Psest_2184 at 2341.911 kb on + strand, within Psest_2184 at 2341.911 kb on + strand, within Psest_2184 at 2341.911 kb on + strand, within Psest_2184 at 2341.911 kb on + strand, within Psest_2184 at 2341.912 kb on - strand, within Psest_2184 at 2341.912 kb on - strand, within Psest_2184 at 2341.912 kb on - strand, within Psest_2184 at 2341.912 kb on - strand, within Psest_2184 at 2341.912 kb on - strand, within Psest_2184 at 2341.912 kb on - strand, within Psest_2184 at 2341.920 kb on - strand, within Psest_2184 at 2341.941 kb on - strand, within Psest_2184
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 2,339,097 + Psest_2181 0.79 -1.1 2,339,097 + Psest_2181 0.79 +0.4 2,339,097 + Psest_2181 0.79 -1.8 2,339,097 + Psest_2181 0.79 +0.3 2,339,098 - Psest_2181 0.79 -0.9 2,339,098 - Psest_2181 0.79 -1.8 2,339,098 - Psest_2181 0.79 +0.0 2,339,098 - Psest_2181 0.79 -1.8 2,339,380 + +0.9 2,339,380 + -0.2 2,339,381 - -0.5 2,339,551 + Psest_2182 0.11 +0.1 2,339,552 - Psest_2182 0.12 -2.5 2,339,587 + Psest_2182 0.23 -1.3 2,339,587 + Psest_2182 0.23 +0.1 2,339,587 + Psest_2182 0.23 +0.0 2,339,587 + Psest_2182 0.23 +0.2 2,339,587 + +0.5 2,339,587 + Psest_2182 0.23 -1.5 2,339,587 + Psest_2182 0.23 -0.3 2,339,587 + Psest_2182 0.23 +2.9 2,339,587 + Psest_2182 0.23 +0.1 2,339,587 + Psest_2182 0.23 +0.5 2,339,587 + Psest_2182 0.23 +0.5 2,339,587 + Psest_2182 0.23 +0.5 2,339,588 - Psest_2182 0.23 -0.3 2,339,588 - Psest_2182 0.23 -0.5 2,339,588 - Psest_2182 0.23 -0.9 2,339,588 - Psest_2182 0.23 -1.0 2,339,588 - Psest_2182 0.23 -0.9 2,339,588 - Psest_2182 0.23 -0.0 2,339,588 - Psest_2182 0.23 -0.3 2,339,588 - Psest_2182 0.23 +1.2 2,339,588 - Psest_2182 0.23 +0.2 2,339,588 - Psest_2182 0.23 +2.4 2,339,588 - Psest_2182 0.23 -0.5 2,339,628 + Psest_2182 0.37 +0.2 2,339,628 + Psest_2182 0.37 -1.1 2,339,628 + Psest_2182 0.37 -0.1 2,339,628 + Psest_2182 0.37 +0.3 2,339,628 + Psest_2182 0.37 +0.9 2,339,629 - Psest_2182 0.37 +1.1 2,339,629 - Psest_2182 0.37 +0.8 2,339,671 + Psest_2182 0.51 +0.5 2,339,672 - Psest_2182 0.51 +0.8 2,339,677 + Psest_2182 0.53 +0.8 2,339,702 - Psest_2182 0.61 +0.1 2,339,757 + Psest_2182 0.79 +0.0 2,339,757 + Psest_2182 0.79 +0.2 2,339,758 - Psest_2182 0.80 -1.4 2,339,852 + +1.2 2,339,852 + +1.3 2,339,852 + +1.2 2,339,943 - -0.2 2,340,245 + Psest_2183 0.22 -0.3 2,340,245 + Psest_2183 0.22 -1.2 2,340,245 + Psest_2183 0.22 -1.8 2,340,245 + Psest_2183 0.22 -0.9 2,340,245 + Psest_2183 0.22 -1.0 2,340,245 + Psest_2183 0.22 -0.3 2,340,632 + Psest_2183 0.64 +1.5 2,340,633 - Psest_2183 0.64 -1.4 2,340,633 - Psest_2183 0.64 +0.4 2,340,678 + Psest_2183 0.68 +1.5 2,340,679 - Psest_2183 0.69 +0.8 2,340,978 - +0.7 2,341,194 + Psest_2184 0.14 -0.3 2,341,279 - Psest_2184 0.19 -1.1 2,341,710 + Psest_2184 0.49 -1.8 2,341,710 + Psest_2184 0.49 +0.8 2,341,710 + Psest_2184 0.49 -0.8 2,341,711 - Psest_2184 0.49 +2.1 2,341,911 + Psest_2184 0.62 -0.5 2,341,911 + Psest_2184 0.62 -0.4 2,341,911 + Psest_2184 0.62 -0.4 2,341,911 + Psest_2184 0.62 +1.3 2,341,911 + Psest_2184 0.62 +0.4 2,341,911 + Psest_2184 0.62 -0.3 2,341,911 + Psest_2184 0.62 -1.3 2,341,911 + Psest_2184 0.62 -2.1 2,341,912 - Psest_2184 0.62 -1.0 2,341,912 - Psest_2184 0.62 -0.8 2,341,912 - Psest_2184 0.62 -1.7 2,341,912 - Psest_2184 0.62 -0.1 2,341,912 - Psest_2184 0.62 -0.0 2,341,912 - Psest_2184 0.62 +0.8 2,341,920 - Psest_2184 0.63 -1.3 2,341,941 - Psest_2184 0.64 +0.2
Or see this region's nucleotide sequence