Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2085 and Psest_2086 are separated by 13 nucleotides Psest_2086 and Psest_2087 are separated by 109 nucleotides Psest_2087 and Psest_2088 are separated by 59 nucleotides Psest_2088 and Psest_2089 overlap by 17 nucleotides
Psest_2085: Psest_2085 - Periplasmic serine proteases (ClpP class), at 2,214,098 to 2,215,120
_2085
Psest_2086: Psest_2086 - putative quinone oxidoreductase, YhdH/YhfP family, at 2,215,134 to 2,216,126
_2086
Psest_2087: Psest_2087 - hypothetical protein, at 2,216,236 to 2,216,337
_2087
Psest_2088: Psest_2088 - Uncharacterized protein conserved in bacteria, at 2,216,397 to 2,216,897
_2088
Psest_2089: Psest_2089 - Sulfite reductase, beta subunit (hemoprotein), at 2,216,881 to 2,218,539
_2089
Position (kb)
2215
2216
2217 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2214.251 kb on + strand, within Psest_2085 at 2214.516 kb on - strand, within Psest_2085 at 2214.605 kb on + strand, within Psest_2085 at 2214.749 kb on + strand, within Psest_2085 at 2214.824 kb on - strand, within Psest_2085 at 2214.962 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.007 kb on + strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.008 kb on - strand, within Psest_2085 at 2215.011 kb on + strand, within Psest_2085 at 2215.011 kb on + strand, within Psest_2085 at 2215.012 kb on - strand, within Psest_2085 at 2215.012 kb on - strand, within Psest_2085 at 2215.012 kb on - strand, within Psest_2085 at 2215.012 kb on - strand, within Psest_2085 at 2215.060 kb on + strand at 2215.153 kb on + strand at 2215.251 kb on + strand, within Psest_2086 at 2215.280 kb on - strand, within Psest_2086 at 2215.314 kb on + strand, within Psest_2086 at 2215.446 kb on + strand, within Psest_2086 at 2215.516 kb on + strand, within Psest_2086 at 2215.517 kb on - strand, within Psest_2086 at 2215.628 kb on + strand, within Psest_2086 at 2215.659 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.661 kb on + strand, within Psest_2086 at 2215.662 kb on - strand, within Psest_2086 at 2215.662 kb on - strand, within Psest_2086 at 2215.662 kb on - strand, within Psest_2086 at 2215.675 kb on + strand, within Psest_2086 at 2215.916 kb on + strand, within Psest_2086 at 2215.916 kb on + strand, within Psest_2086 at 2216.113 kb on + strand at 2216.113 kb on + strand at 2216.114 kb on - strand at 2216.138 kb on + strand at 2216.139 kb on - strand at 2216.139 kb on - strand at 2216.317 kb on - strand, within Psest_2087 at 2216.330 kb on - strand at 2216.330 kb on - strand at 2216.449 kb on + strand, within Psest_2088 at 2216.449 kb on + strand, within Psest_2088 at 2216.449 kb on + strand, within Psest_2088
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 2,214,251 + Psest_2085 0.15 -0.4 2,214,516 - Psest_2085 0.41 +2.7 2,214,605 + Psest_2085 0.50 -1.3 2,214,749 + Psest_2085 0.64 +2.4 2,214,824 - Psest_2085 0.71 -0.2 2,214,962 + Psest_2085 0.84 +0.2 2,215,007 + Psest_2085 0.89 -0.8 2,215,007 + Psest_2085 0.89 +1.7 2,215,007 + Psest_2085 0.89 -0.1 2,215,007 + Psest_2085 0.89 +0.9 2,215,007 + Psest_2085 0.89 -1.5 2,215,007 + Psest_2085 0.89 -0.8 2,215,007 + Psest_2085 0.89 +1.3 2,215,008 - Psest_2085 0.89 -1.7 2,215,008 - Psest_2085 0.89 +0.2 2,215,008 - Psest_2085 0.89 +0.4 2,215,008 - Psest_2085 0.89 +1.4 2,215,008 - Psest_2085 0.89 +1.1 2,215,008 - Psest_2085 0.89 -0.4 2,215,011 + Psest_2085 0.89 +0.3 2,215,011 + Psest_2085 0.89 -0.3 2,215,012 - Psest_2085 0.89 -1.7 2,215,012 - Psest_2085 0.89 +1.3 2,215,012 - Psest_2085 0.89 -1.5 2,215,012 - Psest_2085 0.89 -1.8 2,215,060 + +0.6 2,215,153 + +0.3 2,215,251 + Psest_2086 0.12 +2.7 2,215,280 - Psest_2086 0.15 -0.0 2,215,314 + Psest_2086 0.18 +0.9 2,215,446 + Psest_2086 0.31 -0.3 2,215,516 + Psest_2086 0.38 -0.8 2,215,517 - Psest_2086 0.39 +2.5 2,215,628 + Psest_2086 0.50 -0.2 2,215,659 + Psest_2086 0.53 -0.1 2,215,661 + Psest_2086 0.53 +2.7 2,215,661 + Psest_2086 0.53 +0.5 2,215,661 + Psest_2086 0.53 +1.3 2,215,661 + Psest_2086 0.53 -3.5 2,215,661 + Psest_2086 0.53 +0.3 2,215,661 + Psest_2086 0.53 +2.1 2,215,662 - Psest_2086 0.53 +2.6 2,215,662 - Psest_2086 0.53 +0.1 2,215,662 - Psest_2086 0.53 -1.7 2,215,675 + Psest_2086 0.54 +1.7 2,215,916 + Psest_2086 0.79 +1.0 2,215,916 + Psest_2086 0.79 -1.0 2,216,113 + +0.3 2,216,113 + -0.5 2,216,114 - -1.8 2,216,138 + +0.8 2,216,139 - +0.5 2,216,139 - -0.4 2,216,317 - Psest_2087 0.79 -0.1 2,216,330 - +1.0 2,216,330 - -0.9 2,216,449 + Psest_2088 0.10 +0.2 2,216,449 + Psest_2088 0.10 +0.7 2,216,449 + Psest_2088 0.10 -0.6
Or see this region's nucleotide sequence