Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1625 and Psest_1626 are separated by 45 nucleotides Psest_1626 and Psest_1627 are separated by 150 nucleotides Psest_1627 and Psest_1628 are separated by 16 nucleotides Psest_1628 and Psest_1629 are separated by 141 nucleotides Psest_1629 and Psest_1630 are separated by 6 nucleotides
Psest_1625: Psest_1625 - hypothetical protein, at 1,728,290 to 1,728,610
_1625
Psest_1626: Psest_1626 - Predicted integral membrane protein, at 1,728,656 to 1,729,093
_1626
Psest_1627: Psest_1627 - Superfamily II DNA and RNA helicases, at 1,729,244 to 1,730,575
_1627
Psest_1628: Psest_1628 - hypothetical protein, at 1,730,592 to 1,730,888
_1628
Psest_1629: Psest_1629 - hypothetical protein, at 1,731,030 to 1,731,410
_1629
Psest_1630: Psest_1630 - Transcriptional regulator, at 1,731,417 to 1,732,271
_1630
Position (kb)
1729
1730
1731 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1728.246 kb on - strand at 1728.248 kb on - strand at 1728.272 kb on - strand at 1728.351 kb on - strand, within Psest_1625 at 1728.357 kb on + strand, within Psest_1625 at 1728.358 kb on - strand, within Psest_1625 at 1728.447 kb on - strand, within Psest_1625 at 1728.608 kb on + strand at 1728.609 kb on - strand at 1728.665 kb on + strand at 1728.666 kb on - strand at 1728.666 kb on - strand at 1728.744 kb on + strand, within Psest_1626 at 1728.754 kb on - strand, within Psest_1626 at 1728.933 kb on + strand, within Psest_1626 at 1729.038 kb on + strand, within Psest_1626 at 1729.039 kb on - strand, within Psest_1626 at 1729.039 kb on - strand, within Psest_1626 at 1729.055 kb on + strand at 1729.206 kb on + strand at 1729.206 kb on + strand at 1729.206 kb on + strand at 1729.206 kb on + strand at 1729.207 kb on - strand at 1729.207 kb on - strand at 1729.207 kb on - strand at 1729.207 kb on - strand at 1729.207 kb on - strand at 1729.216 kb on + strand at 1729.217 kb on - strand at 1729.236 kb on + strand at 1729.237 kb on - strand at 1729.362 kb on + strand at 1729.362 kb on + strand at 1729.362 kb on + strand at 1729.363 kb on - strand at 1729.970 kb on + strand, within Psest_1627 at 1729.970 kb on + strand, within Psest_1627 at 1729.970 kb on + strand, within Psest_1627 at 1729.971 kb on - strand, within Psest_1627 at 1729.971 kb on - strand, within Psest_1627 at 1729.971 kb on - strand, within Psest_1627 at 1729.971 kb on - strand, within Psest_1627 at 1730.222 kb on + strand, within Psest_1627 at 1730.222 kb on + strand, within Psest_1627 at 1730.222 kb on + strand, within Psest_1627 at 1730.222 kb on + strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.223 kb on - strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.375 kb on + strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.376 kb on - strand, within Psest_1627 at 1730.643 kb on + strand, within Psest_1628 at 1730.644 kb on - strand, within Psest_1628 at 1730.644 kb on - strand, within Psest_1628 at 1730.644 kb on - strand, within Psest_1628 at 1730.665 kb on + strand, within Psest_1628 at 1730.665 kb on + strand, within Psest_1628 at 1730.666 kb on - strand, within Psest_1628 at 1730.733 kb on + strand, within Psest_1628 at 1730.942 kb on - strand at 1730.942 kb on - strand at 1730.942 kb on - strand at 1730.980 kb on + strand at 1730.980 kb on + strand at 1730.980 kb on + strand at 1730.980 kb on + strand at 1730.981 kb on - strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.982 kb on + strand at 1730.983 kb on - strand at 1730.984 kb on + strand at 1730.984 kb on + strand at 1730.984 kb on + strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1730.985 kb on - strand at 1731.036 kb on + strand at 1731.036 kb on + strand at 1731.037 kb on - strand at 1731.037 kb on - strand at 1731.419 kb on - strand at 1731.440 kb on + strand at 1731.442 kb on + strand at 1731.443 kb on - strand at 1731.443 kb on - strand at 1731.443 kb on - strand at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.543 kb on + strand, within Psest_1630 at 1731.544 kb on - strand, within Psest_1630
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 1,728,246 - -2.6 1,728,248 - -2.4 1,728,272 - -0.0 1,728,351 - Psest_1625 0.19 -0.9 1,728,357 + Psest_1625 0.21 -0.4 1,728,358 - Psest_1625 0.21 -0.3 1,728,447 - Psest_1625 0.49 -0.1 1,728,608 + -2.6 1,728,609 - -0.5 1,728,665 + -0.1 1,728,666 - -1.1 1,728,666 - -2.1 1,728,744 + Psest_1626 0.20 +0.0 1,728,754 - Psest_1626 0.22 -1.5 1,728,933 + Psest_1626 0.63 +0.9 1,729,038 + Psest_1626 0.87 +1.1 1,729,039 - Psest_1626 0.87 -0.7 1,729,039 - Psest_1626 0.87 -3.2 1,729,055 + +1.0 1,729,206 + -2.6 1,729,206 + +0.7 1,729,206 + +0.0 1,729,206 + +2.5 1,729,207 - -0.4 1,729,207 - -2.1 1,729,207 - -1.7 1,729,207 - -1.1 1,729,207 - -0.7 1,729,216 + -1.0 1,729,217 - -2.4 1,729,236 + -0.7 1,729,237 - -1.6 1,729,362 + -1.7 1,729,362 + -2.5 1,729,362 + -3.4 1,729,363 - -1.4 1,729,970 + Psest_1627 0.55 -0.1 1,729,970 + Psest_1627 0.55 -1.5 1,729,970 + Psest_1627 0.55 -0.3 1,729,971 - Psest_1627 0.55 -2.0 1,729,971 - Psest_1627 0.55 -2.4 1,729,971 - Psest_1627 0.55 -1.1 1,729,971 - Psest_1627 0.55 -1.5 1,730,222 + Psest_1627 0.73 -1.1 1,730,222 + Psest_1627 0.73 -1.5 1,730,222 + Psest_1627 0.73 -0.2 1,730,222 + Psest_1627 0.73 -1.6 1,730,223 - Psest_1627 0.73 -0.1 1,730,223 - Psest_1627 0.73 +0.2 1,730,223 - Psest_1627 0.73 -1.5 1,730,223 - Psest_1627 0.73 -0.6 1,730,223 - Psest_1627 0.73 -2.7 1,730,223 - Psest_1627 0.73 -1.4 1,730,375 + Psest_1627 0.85 -0.5 1,730,375 + Psest_1627 0.85 +0.4 1,730,375 + Psest_1627 0.85 +1.4 1,730,375 + Psest_1627 0.85 -2.5 1,730,375 + Psest_1627 0.85 -0.8 1,730,375 + Psest_1627 0.85 -1.4 1,730,375 + Psest_1627 0.85 -0.2 1,730,375 + Psest_1627 0.85 -1.4 1,730,375 + Psest_1627 0.85 -1.4 1,730,375 + Psest_1627 0.85 -0.3 1,730,375 + Psest_1627 0.85 +0.1 1,730,375 + Psest_1627 0.85 +0.4 1,730,375 + Psest_1627 0.85 -0.2 1,730,375 + Psest_1627 0.85 +0.3 1,730,376 - Psest_1627 0.85 -0.8 1,730,376 - Psest_1627 0.85 -0.2 1,730,376 - Psest_1627 0.85 -1.1 1,730,376 - Psest_1627 0.85 -3.3 1,730,376 - Psest_1627 0.85 -1.1 1,730,376 - Psest_1627 0.85 -0.8 1,730,376 - Psest_1627 0.85 +0.6 1,730,376 - Psest_1627 0.85 -2.1 1,730,376 - Psest_1627 0.85 -1.8 1,730,376 - Psest_1627 0.85 -0.2 1,730,376 - Psest_1627 0.85 -0.9 1,730,376 - Psest_1627 0.85 -1.0 1,730,376 - Psest_1627 0.85 -1.0 1,730,643 + Psest_1628 0.17 +1.3 1,730,644 - Psest_1628 0.18 -0.9 1,730,644 - Psest_1628 0.18 -0.1 1,730,644 - Psest_1628 0.18 -1.4 1,730,665 + Psest_1628 0.25 -2.9 1,730,665 + Psest_1628 0.25 +0.4 1,730,666 - Psest_1628 0.25 +2.1 1,730,733 + Psest_1628 0.47 -0.5 1,730,942 - -1.1 1,730,942 - -0.1 1,730,942 - +1.3 1,730,980 + -0.1 1,730,980 + +2.1 1,730,980 + -0.2 1,730,980 + -1.7 1,730,981 - +0.3 1,730,982 + -1.0 1,730,982 + +0.4 1,730,982 + -0.6 1,730,982 + +3.4 1,730,982 + -0.8 1,730,982 + -1.6 1,730,982 + +0.5 1,730,982 + +0.3 1,730,983 - -1.1 1,730,984 + -0.6 1,730,984 + -0.4 1,730,984 + -0.9 1,730,985 - -1.1 1,730,985 - +0.2 1,730,985 - +1.1 1,730,985 - +1.4 1,730,985 - -0.1 1,730,985 - -0.7 1,730,985 - -0.6 1,730,985 - -1.1 1,730,985 - -2.7 1,730,985 - +1.1 1,730,985 - -1.2 1,730,985 - +0.1 1,730,985 - -0.9 1,730,985 - +0.4 1,730,985 - -1.6 1,731,036 + +1.8 1,731,036 + +0.0 1,731,037 - -1.7 1,731,037 - -0.8 1,731,419 - +0.9 1,731,440 + -0.2 1,731,442 + +1.3 1,731,443 - -0.1 1,731,443 - -0.7 1,731,443 - +0.8 1,731,543 + Psest_1630 0.15 +0.4 1,731,543 + Psest_1630 0.15 +2.2 1,731,543 + Psest_1630 0.15 +2.3 1,731,543 + Psest_1630 0.15 +1.2 1,731,544 - Psest_1630 0.15 +1.9
Or see this region's nucleotide sequence