Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4171 and Psest_4172 overlap by 29 nucleotides Psest_4172 and Psest_4173 are separated by 20 nucleotides Psest_4173 and Psest_4174 are separated by 20 nucleotides
Psest_4171: Psest_4171 - Flagellar motor switch protein, at 4,349,424 to 4,350,491
_4171
Psest_4172: Psest_4172 - flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF), at 4,350,463 to 4,352,139
_4172
Psest_4173: Psest_4173 - flagellar hook-basal body complex protein FliE, at 4,352,160 to 4,352,480
_4173
Psest_4174: Psest_4174 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 4,352,501 to 4,353,913
_4174
Position (kb)
4350
4351
4352
4353 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4349.512 kb on - strand at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.722 kb on + strand, within Psest_4171 at 4349.723 kb on - strand, within Psest_4171 at 4349.723 kb on - strand, within Psest_4171 at 4349.723 kb on - strand, within Psest_4171 at 4349.723 kb on - strand, within Psest_4171 at 4349.723 kb on - strand, within Psest_4171 at 4349.723 kb on - strand, within Psest_4171 at 4349.723 kb on - strand, within Psest_4171 at 4350.124 kb on + strand, within Psest_4171 at 4350.124 kb on + strand, within Psest_4171 at 4350.124 kb on + strand, within Psest_4171 at 4350.124 kb on + strand, within Psest_4171 at 4350.124 kb on + strand, within Psest_4171 at 4350.124 kb on + strand, within Psest_4171 at 4350.124 kb on + strand, within Psest_4171 at 4350.125 kb on - strand, within Psest_4171 at 4350.125 kb on - strand, within Psest_4171 at 4350.125 kb on - strand, within Psest_4171 at 4350.125 kb on - strand, within Psest_4171 at 4350.125 kb on - strand, within Psest_4171 at 4350.191 kb on - strand, within Psest_4171 at 4350.191 kb on - strand, within Psest_4171 at 4350.229 kb on + strand, within Psest_4171 at 4350.229 kb on + strand, within Psest_4171 at 4350.229 kb on + strand, within Psest_4171 at 4350.229 kb on + strand, within Psest_4171 at 4350.230 kb on - strand, within Psest_4171 at 4350.230 kb on - strand, within Psest_4171 at 4350.637 kb on - strand, within Psest_4172 at 4350.637 kb on - strand, within Psest_4172 at 4350.637 kb on - strand, within Psest_4172 at 4351.110 kb on - strand, within Psest_4172 at 4351.428 kb on - strand, within Psest_4172 at 4351.473 kb on + strand, within Psest_4172 at 4351.474 kb on - strand, within Psest_4172 at 4351.699 kb on + strand, within Psest_4172 at 4351.699 kb on + strand, within Psest_4172 at 4351.700 kb on - strand, within Psest_4172 at 4351.700 kb on - strand, within Psest_4172 at 4351.945 kb on + strand, within Psest_4172 at 4351.946 kb on - strand, within Psest_4172 at 4351.946 kb on - strand, within Psest_4172 at 4352.024 kb on + strand at 4352.024 kb on + strand at 4352.024 kb on + strand at 4352.024 kb on + strand at 4352.144 kb on + strand at 4352.144 kb on + strand at 4352.144 kb on + strand at 4352.144 kb on + strand at 4352.145 kb on - strand at 4352.145 kb on - strand at 4352.145 kb on - strand at 4352.898 kb on + strand, within Psest_4174 at 4352.898 kb on + strand, within Psest_4174 at 4352.899 kb on - strand, within Psest_4174 at 4352.899 kb on - strand, within Psest_4174
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 4,349,512 - +0.6 4,349,722 + Psest_4171 0.28 -0.6 4,349,722 + Psest_4171 0.28 -1.6 4,349,722 + Psest_4171 0.28 +0.8 4,349,722 + Psest_4171 0.28 -2.7 4,349,722 + Psest_4171 0.28 +0.8 4,349,722 + Psest_4171 0.28 -0.0 4,349,722 + Psest_4171 0.28 -1.0 4,349,722 + Psest_4171 0.28 -0.8 4,349,722 + Psest_4171 0.28 -1.9 4,349,722 + Psest_4171 0.28 -0.2 4,349,722 + Psest_4171 0.28 +0.8 4,349,723 - Psest_4171 0.28 +0.1 4,349,723 - Psest_4171 0.28 +0.8 4,349,723 - Psest_4171 0.28 -1.7 4,349,723 - Psest_4171 0.28 +1.2 4,349,723 - Psest_4171 0.28 +1.1 4,349,723 - Psest_4171 0.28 -0.4 4,349,723 - Psest_4171 0.28 +1.1 4,350,124 + Psest_4171 0.66 -1.0 4,350,124 + Psest_4171 0.66 +1.7 4,350,124 + Psest_4171 0.66 +1.0 4,350,124 + Psest_4171 0.66 +0.3 4,350,124 + Psest_4171 0.66 -0.8 4,350,124 + Psest_4171 0.66 +0.9 4,350,124 + Psest_4171 0.66 -0.8 4,350,125 - Psest_4171 0.66 -3.1 4,350,125 - Psest_4171 0.66 +2.4 4,350,125 - Psest_4171 0.66 +1.2 4,350,125 - Psest_4171 0.66 +0.0 4,350,125 - Psest_4171 0.66 -1.3 4,350,191 - Psest_4171 0.72 +1.0 4,350,191 - Psest_4171 0.72 +2.3 4,350,229 + Psest_4171 0.75 -0.9 4,350,229 + Psest_4171 0.75 -1.8 4,350,229 + Psest_4171 0.75 -0.1 4,350,229 + Psest_4171 0.75 +0.8 4,350,230 - Psest_4171 0.75 +1.4 4,350,230 - Psest_4171 0.75 -0.1 4,350,637 - Psest_4172 0.10 -0.7 4,350,637 - Psest_4172 0.10 -0.9 4,350,637 - Psest_4172 0.10 +1.1 4,351,110 - Psest_4172 0.39 -0.0 4,351,428 - Psest_4172 0.58 -0.2 4,351,473 + Psest_4172 0.60 -0.2 4,351,474 - Psest_4172 0.60 -0.6 4,351,699 + Psest_4172 0.74 -0.5 4,351,699 + Psest_4172 0.74 +0.2 4,351,700 - Psest_4172 0.74 +1.6 4,351,700 - Psest_4172 0.74 +0.3 4,351,945 + Psest_4172 0.88 -0.6 4,351,946 - Psest_4172 0.88 -0.7 4,351,946 - Psest_4172 0.88 -1.4 4,352,024 + -0.3 4,352,024 + +0.5 4,352,024 + +0.3 4,352,024 + -2.8 4,352,144 + -0.1 4,352,144 + -1.2 4,352,144 + -1.9 4,352,144 + -1.1 4,352,145 - +3.5 4,352,145 - -1.7 4,352,145 - +0.5 4,352,898 + Psest_4174 0.28 +1.4 4,352,898 + Psest_4174 0.28 +2.0 4,352,899 - Psest_4174 0.28 +0.5 4,352,899 - Psest_4174 0.28 -1.3
Or see this region's nucleotide sequence