Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3995

Experiment: Bacitracin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3994 and Psest_3995 are separated by 76 nucleotidesPsest_3995 and Psest_3996 are separated by 225 nucleotides Psest_3994: Psest_3994 - Signal transduction histidine kinase, at 4,162,843 to 4,164,174 _3994 Psest_3995: Psest_3995 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 4,164,251 to 4,164,985 _3995 Psest_3996: Psest_3996 - Transcriptional accessory protein, at 4,165,211 to 4,167,544 _3996 Position (kb) 4164 4165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.279 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.768 kb on + strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.769 kb on - strand, within Psest_3994at 4163.903 kb on + strand, within Psest_3994at 4163.904 kb on - strand, within Psest_3994at 4163.915 kb on + strand, within Psest_3994at 4164.077 kb on + strandat 4164.077 kb on + strandat 4164.078 kb on - strandat 4164.078 kb on - strandat 4164.279 kb on + strandat 4164.367 kb on + strand, within Psest_3995at 4164.541 kb on - strand, within Psest_3995at 4164.664 kb on - strand, within Psest_3995at 4165.015 kb on - strandat 4165.151 kb on + strandat 4165.151 kb on + strandat 4165.151 kb on + strandat 4165.152 kb on - strandat 4165.152 kb on - strandat 4165.204 kb on + strandat 4165.204 kb on + strandat 4165.204 kb on + strandat 4165.205 kb on - strandat 4165.205 kb on - strandat 4165.205 kb on - strandat 4165.514 kb on + strand, within Psest_3996at 4165.514 kb on + strand, within Psest_3996at 4165.523 kb on + strand, within Psest_3996at 4165.523 kb on + strand, within Psest_3996at 4165.523 kb on + strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.524 kb on - strand, within Psest_3996at 4165.525 kb on + strand, within Psest_3996at 4165.525 kb on + strand, within Psest_3996at 4165.525 kb on + strand, within Psest_3996at 4165.525 kb on + strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.526 kb on - strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.694 kb on + strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.695 kb on - strand, within Psest_3996at 4165.826 kb on + strand, within Psest_3996

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
remove
4,163,279 + Psest_3994 0.33 +1.6
4,163,279 + Psest_3994 0.33 -2.0
4,163,279 + Psest_3994 0.33 +2.3
4,163,279 + Psest_3994 0.33 +1.2
4,163,768 + Psest_3994 0.69 +0.5
4,163,768 + Psest_3994 0.69 +0.3
4,163,768 + Psest_3994 0.69 +0.4
4,163,769 - Psest_3994 0.70 +0.6
4,163,769 - Psest_3994 0.70 +1.4
4,163,769 - Psest_3994 0.70 +1.9
4,163,769 - Psest_3994 0.70 +0.5
4,163,769 - Psest_3994 0.70 +0.1
4,163,769 - Psest_3994 0.70 +1.8
4,163,903 + Psest_3994 0.80 +1.1
4,163,904 - Psest_3994 0.80 +0.2
4,163,915 + Psest_3994 0.80 +0.5
4,164,077 + -0.4
4,164,077 + -0.8
4,164,078 - -0.4
4,164,078 - -0.7
4,164,279 + -2.0
4,164,367 + Psest_3995 0.16 -0.2
4,164,541 - Psest_3995 0.39 -0.4
4,164,664 - Psest_3995 0.56 -0.2
4,165,015 - -0.4
4,165,151 + -0.7
4,165,151 + +0.8
4,165,151 + +1.0
4,165,152 - -0.3
4,165,152 - +2.6
4,165,204 + -1.2
4,165,204 + -1.0
4,165,204 + -0.7
4,165,205 - -1.4
4,165,205 - -0.2
4,165,205 - -3.9
4,165,514 + Psest_3996 0.13 -0.8
4,165,514 + Psest_3996 0.13 -2.2
4,165,523 + Psest_3996 0.13 -2.4
4,165,523 + Psest_3996 0.13 -3.1
4,165,523 + Psest_3996 0.13 -1.8
4,165,524 - Psest_3996 0.13 -3.4
4,165,524 - Psest_3996 0.13 -1.0
4,165,524 - Psest_3996 0.13 -3.5
4,165,524 - Psest_3996 0.13 -1.8
4,165,524 - Psest_3996 0.13 -1.6
4,165,525 + Psest_3996 0.13 -2.6
4,165,525 + Psest_3996 0.13 -1.5
4,165,525 + Psest_3996 0.13 -2.1
4,165,525 + Psest_3996 0.13 -1.7
4,165,526 - Psest_3996 0.13 -1.2
4,165,526 - Psest_3996 0.13 -1.1
4,165,526 - Psest_3996 0.13 -0.8
4,165,526 - Psest_3996 0.13 -1.4
4,165,526 - Psest_3996 0.13 -1.4
4,165,526 - Psest_3996 0.13 -0.8
4,165,526 - Psest_3996 0.13 -1.6
4,165,694 + Psest_3996 0.21 -2.8
4,165,694 + Psest_3996 0.21 -2.6
4,165,694 + Psest_3996 0.21 -2.9
4,165,694 + Psest_3996 0.21 -0.8
4,165,694 + Psest_3996 0.21 -2.8
4,165,694 + Psest_3996 0.21 -2.2
4,165,694 + Psest_3996 0.21 -2.4
4,165,694 + Psest_3996 0.21 +0.1
4,165,694 + Psest_3996 0.21 -2.2
4,165,694 + Psest_3996 0.21 -1.9
4,165,694 + Psest_3996 0.21 -2.7
4,165,695 - Psest_3996 0.21 -2.1
4,165,695 - Psest_3996 0.21 -2.9
4,165,695 - Psest_3996 0.21 -0.5
4,165,695 - Psest_3996 0.21 -0.1
4,165,695 - Psest_3996 0.21 -2.1
4,165,695 - Psest_3996 0.21 -0.4
4,165,695 - Psest_3996 0.21 -2.3
4,165,695 - Psest_3996 0.21 -2.2
4,165,695 - Psest_3996 0.21 -3.4
4,165,695 - Psest_3996 0.21 -1.2
4,165,695 - Psest_3996 0.21 -1.4
4,165,695 - Psest_3996 0.21 -3.4
4,165,826 + Psest_3996 0.26 -0.6

Or see this region's nucleotide sequence