Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3517

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3516 and Psest_3517 are separated by 145 nucleotidesPsest_3517 and Psest_3518 are separated by 241 nucleotidesPsest_3518 and Psest_3519 are separated by 236 nucleotides Psest_3516: Psest_3516 - Leucine dehydrogenase (EC 1.4.1.9) (from data), at 3,692,956 to 3,694,050 _3516 Psest_3517: Psest_3517 - branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate (from data), at 3,694,196 to 3,697,666 _3517 Psest_3518: Psest_3518 - Transcriptional regulators, at 3,697,908 to 3,698,378 _3518 Psest_3519: Psest_3519 - Uncharacterized conserved protein, at 3,698,615 to 3,699,031 _3519 Position (kb) 3694 3695 3696 3697 3698Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3693.356 kb on + strand, within Psest_3516at 3693.356 kb on + strand, within Psest_3516at 3693.356 kb on + strand, within Psest_3516at 3693.357 kb on - strand, within Psest_3516at 3693.720 kb on + strand, within Psest_3516at 3693.720 kb on + strand, within Psest_3516at 3693.721 kb on - strand, within Psest_3516at 3693.721 kb on - strand, within Psest_3516at 3693.723 kb on - strand, within Psest_3516at 3693.723 kb on - strand, within Psest_3516at 3693.723 kb on - strand, within Psest_3516at 3693.908 kb on + strand, within Psest_3516at 3694.099 kb on + strandat 3694.100 kb on - strandat 3694.100 kb on - strandat 3694.100 kb on - strandat 3694.100 kb on - strandat 3694.362 kb on + strandat 3694.611 kb on + strand, within Psest_3517at 3694.612 kb on - strand, within Psest_3517at 3694.612 kb on - strand, within Psest_3517at 3694.662 kb on + strand, within Psest_3517at 3694.662 kb on + strand, within Psest_3517at 3694.662 kb on + strand, within Psest_3517at 3694.680 kb on + strand, within Psest_3517at 3694.692 kb on + strand, within Psest_3517at 3694.692 kb on + strand, within Psest_3517at 3694.693 kb on - strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.714 kb on - strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.343 kb on + strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.344 kb on - strand, within Psest_3517at 3695.582 kb on + strand, within Psest_3517at 3695.859 kb on + strand, within Psest_3517at 3695.860 kb on - strand, within Psest_3517at 3695.860 kb on - strand, within Psest_3517at 3696.096 kb on + strand, within Psest_3517at 3696.097 kb on - strand, within Psest_3517at 3696.108 kb on + strand, within Psest_3517at 3696.108 kb on + strand, within Psest_3517at 3696.108 kb on + strand, within Psest_3517at 3696.109 kb on - strand, within Psest_3517at 3696.109 kb on - strand, within Psest_3517at 3696.168 kb on + strand, within Psest_3517at 3696.168 kb on + strand, within Psest_3517at 3696.168 kb on + strand, within Psest_3517at 3696.168 kb on + strand, within Psest_3517at 3696.168 kb on + strand, within Psest_3517at 3696.169 kb on - strand, within Psest_3517at 3696.169 kb on - strand, within Psest_3517at 3696.169 kb on - strand, within Psest_3517at 3696.169 kb on - strand, within Psest_3517at 3696.169 kb on - strand, within Psest_3517at 3696.297 kb on + strand, within Psest_3517at 3696.297 kb on + strand, within Psest_3517at 3696.297 kb on + strand, within Psest_3517at 3696.297 kb on + strand, within Psest_3517at 3696.297 kb on + strand, within Psest_3517at 3696.297 kb on + strand, within Psest_3517at 3696.297 kb on + strand, within Psest_3517at 3696.298 kb on - strand, within Psest_3517at 3696.298 kb on - strand, within Psest_3517at 3696.298 kb on - strand, within Psest_3517at 3696.298 kb on - strand, within Psest_3517at 3696.298 kb on - strand, within Psest_3517at 3696.376 kb on - strand, within Psest_3517at 3696.399 kb on + strand, within Psest_3517at 3696.399 kb on + strand, within Psest_3517at 3696.399 kb on + strand, within Psest_3517at 3696.399 kb on + strand, within Psest_3517at 3696.400 kb on - strand, within Psest_3517at 3696.471 kb on + strand, within Psest_3517at 3696.471 kb on + strand, within Psest_3517at 3696.471 kb on + strand, within Psest_3517at 3696.471 kb on + strand, within Psest_3517at 3696.471 kb on + strand, within Psest_3517at 3696.471 kb on + strand, within Psest_3517at 3696.472 kb on - strand, within Psest_3517at 3696.606 kb on + strand, within Psest_3517at 3696.606 kb on + strand, within Psest_3517at 3696.607 kb on - strand, within Psest_3517at 3696.807 kb on + strand, within Psest_3517at 3696.808 kb on - strand, within Psest_3517at 3696.808 kb on - strand, within Psest_3517at 3696.808 kb on - strand, within Psest_3517at 3696.903 kb on + strand, within Psest_3517at 3696.904 kb on - strand, within Psest_3517at 3696.904 kb on - strand, within Psest_3517at 3696.904 kb on - strand, within Psest_3517at 3696.904 kb on - strand, within Psest_3517at 3696.904 kb on - strand, within Psest_3517at 3696.904 kb on - strand, within Psest_3517at 3696.913 kb on - strand, within Psest_3517at 3697.122 kb on + strand, within Psest_3517at 3697.122 kb on + strand, within Psest_3517at 3697.353 kb on + strandat 3697.353 kb on + strandat 3697.354 kb on - strandat 3697.354 kb on - strandat 3697.354 kb on - strandat 3697.458 kb on + strandat 3697.458 kb on + strandat 3697.458 kb on + strandat 3697.608 kb on + strandat 3697.608 kb on + strandat 3697.608 kb on + strandat 3697.608 kb on + strandat 3697.609 kb on - strandat 3697.609 kb on - strandat 3697.609 kb on - strandat 3697.609 kb on - strandat 3697.632 kb on + strandat 3697.678 kb on - strandat 3697.678 kb on - strandat 3697.678 kb on - strandat 3697.852 kb on - strandat 3697.925 kb on - strandat 3698.268 kb on + strand, within Psest_3518at 3698.269 kb on - strand, within Psest_3518at 3698.376 kb on + strandat 3698.377 kb on - strandat 3698.434 kb on - strandat 3698.477 kb on - strandat 3698.616 kb on + strandat 3698.616 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,693,356 + Psest_3516 0.37 -0.2
3,693,356 + Psest_3516 0.37 -0.9
3,693,356 + Psest_3516 0.37 -0.2
3,693,357 - Psest_3516 0.37 -0.2
3,693,720 + Psest_3516 0.70 +1.2
3,693,720 + Psest_3516 0.70 +0.1
3,693,721 - Psest_3516 0.70 -0.2
3,693,721 - Psest_3516 0.70 +0.6
3,693,723 - Psest_3516 0.70 +0.6
3,693,723 - Psest_3516 0.70 -2.6
3,693,723 - Psest_3516 0.70 +0.3
3,693,908 + Psest_3516 0.87 +0.1
3,694,099 + -1.1
3,694,100 - +0.9
3,694,100 - -0.0
3,694,100 - -1.2
3,694,100 - +0.6
3,694,362 + +0.6
3,694,611 + Psest_3517 0.12 +1.0
3,694,612 - Psest_3517 0.12 -0.1
3,694,612 - Psest_3517 0.12 +1.6
3,694,662 + Psest_3517 0.13 -2.0
3,694,662 + Psest_3517 0.13 -1.6
3,694,662 + Psest_3517 0.13 -0.1
3,694,680 + Psest_3517 0.14 -1.2
3,694,692 + Psest_3517 0.14 +0.9
3,694,692 + Psest_3517 0.14 +1.5
3,694,693 - Psest_3517 0.14 +0.3
3,694,710 + Psest_3517 0.15 +0.9
3,694,710 + Psest_3517 0.15 +0.2
3,694,710 + Psest_3517 0.15 +1.2
3,694,710 + Psest_3517 0.15 -2.5
3,694,710 + Psest_3517 0.15 +1.4
3,694,710 + Psest_3517 0.15 -1.0
3,694,711 - Psest_3517 0.15 -2.2
3,694,711 - Psest_3517 0.15 -1.2
3,694,711 - Psest_3517 0.15 -1.2
3,694,711 - Psest_3517 0.15 +0.3
3,694,711 - Psest_3517 0.15 -0.8
3,694,711 - Psest_3517 0.15 +0.5
3,694,711 - Psest_3517 0.15 -2.8
3,694,714 - Psest_3517 0.15 +0.3
3,695,343 + Psest_3517 0.33 +0.4
3,695,343 + Psest_3517 0.33 +0.0
3,695,343 + Psest_3517 0.33 +0.5
3,695,343 + Psest_3517 0.33 +1.3
3,695,343 + Psest_3517 0.33 +0.5
3,695,343 + Psest_3517 0.33 +0.5
3,695,343 + Psest_3517 0.33 -1.4
3,695,343 + Psest_3517 0.33 -0.7
3,695,343 + Psest_3517 0.33 +0.6
3,695,343 + Psest_3517 0.33 -0.2
3,695,343 + Psest_3517 0.33 -0.9
3,695,343 + Psest_3517 0.33 +0.1
3,695,343 + Psest_3517 0.33 -0.4
3,695,343 + Psest_3517 0.33 -0.3
3,695,343 + Psest_3517 0.33 +0.0
3,695,343 + Psest_3517 0.33 -0.3
3,695,343 + Psest_3517 0.33 -0.4
3,695,343 + Psest_3517 0.33 -0.6
3,695,344 - Psest_3517 0.33 +0.4
3,695,344 - Psest_3517 0.33 -1.9
3,695,344 - Psest_3517 0.33 -1.0
3,695,344 - Psest_3517 0.33 +0.4
3,695,344 - Psest_3517 0.33 +1.1
3,695,344 - Psest_3517 0.33 -1.9
3,695,344 - Psest_3517 0.33 -0.1
3,695,344 - Psest_3517 0.33 -0.5
3,695,344 - Psest_3517 0.33 -4.0
3,695,344 - Psest_3517 0.33 -0.6
3,695,582 + Psest_3517 0.40 -1.5
3,695,859 + Psest_3517 0.48 -0.5
3,695,860 - Psest_3517 0.48 +0.3
3,695,860 - Psest_3517 0.48 -1.6
3,696,096 + Psest_3517 0.55 -1.4
3,696,097 - Psest_3517 0.55 -1.3
3,696,108 + Psest_3517 0.55 -0.2
3,696,108 + Psest_3517 0.55 +1.1
3,696,108 + Psest_3517 0.55 -0.2
3,696,109 - Psest_3517 0.55 -1.3
3,696,109 - Psest_3517 0.55 -0.5
3,696,168 + Psest_3517 0.57 +0.6
3,696,168 + Psest_3517 0.57 +0.2
3,696,168 + Psest_3517 0.57 +0.2
3,696,168 + Psest_3517 0.57 +0.8
3,696,168 + Psest_3517 0.57 -0.6
3,696,169 - Psest_3517 0.57 -0.2
3,696,169 - Psest_3517 0.57 -0.5
3,696,169 - Psest_3517 0.57 +1.5
3,696,169 - Psest_3517 0.57 +1.7
3,696,169 - Psest_3517 0.57 -0.9
3,696,297 + Psest_3517 0.61 -0.8
3,696,297 + Psest_3517 0.61 +0.6
3,696,297 + Psest_3517 0.61 +0.3
3,696,297 + Psest_3517 0.61 +1.0
3,696,297 + Psest_3517 0.61 +0.2
3,696,297 + Psest_3517 0.61 -0.5
3,696,297 + Psest_3517 0.61 +0.5
3,696,298 - Psest_3517 0.61 -3.3
3,696,298 - Psest_3517 0.61 +0.0
3,696,298 - Psest_3517 0.61 -0.8
3,696,298 - Psest_3517 0.61 +0.4
3,696,298 - Psest_3517 0.61 +1.7
3,696,376 - Psest_3517 0.63 +1.3
3,696,399 + Psest_3517 0.63 -0.6
3,696,399 + Psest_3517 0.63 +0.4
3,696,399 + Psest_3517 0.63 +0.6
3,696,399 + Psest_3517 0.63 -0.3
3,696,400 - Psest_3517 0.63 +0.0
3,696,471 + Psest_3517 0.66 -1.6
3,696,471 + Psest_3517 0.66 +0.1
3,696,471 + Psest_3517 0.66 -0.2
3,696,471 + Psest_3517 0.66 -1.3
3,696,471 + Psest_3517 0.66 -1.2
3,696,471 + Psest_3517 0.66 -1.1
3,696,472 - Psest_3517 0.66 +1.0
3,696,606 + Psest_3517 0.69 +0.5
3,696,606 + Psest_3517 0.69 +0.8
3,696,607 - Psest_3517 0.69 -1.6
3,696,807 + Psest_3517 0.75 -1.0
3,696,808 - Psest_3517 0.75 -0.8
3,696,808 - Psest_3517 0.75 -1.5
3,696,808 - Psest_3517 0.75 +0.6
3,696,903 + Psest_3517 0.78 +0.0
3,696,904 - Psest_3517 0.78 -1.1
3,696,904 - Psest_3517 0.78 -0.5
3,696,904 - Psest_3517 0.78 -0.8
3,696,904 - Psest_3517 0.78 +1.9
3,696,904 - Psest_3517 0.78 -0.5
3,696,904 - Psest_3517 0.78 -2.1
3,696,913 - Psest_3517 0.78 -0.5
3,697,122 + Psest_3517 0.84 -0.4
3,697,122 + Psest_3517 0.84 +0.6
3,697,353 + +1.3
3,697,353 + +1.3
3,697,354 - -0.1
3,697,354 - +0.1
3,697,354 - -1.9
3,697,458 + +0.4
3,697,458 + +0.2
3,697,458 + +0.8
3,697,608 + +1.3
3,697,608 + +0.2
3,697,608 + +0.4
3,697,608 + +2.5
3,697,609 - +0.6
3,697,609 - +0.9
3,697,609 - -0.4
3,697,609 - +0.7
3,697,632 + +0.9
3,697,678 - +0.3
3,697,678 - -0.9
3,697,678 - -0.4
3,697,852 - -1.2
3,697,925 - +1.6
3,698,268 + Psest_3518 0.76 -0.2
3,698,269 - Psest_3518 0.77 -1.9
3,698,376 + +2.1
3,698,377 - +0.6
3,698,434 - +0.5
3,698,477 - -0.8
3,698,616 + -0.4
3,698,616 + -0.8

Or see this region's nucleotide sequence