Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3460 and Psest_3461 are separated by 31 nucleotides Psest_3461 and Psest_3462 overlap by 11 nucleotides Psest_3462 and Psest_3463 are separated by 2 nucleotides Psest_3463 and Psest_3464 are separated by 81 nucleotides
Psest_3460: Psest_3460 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 3,630,106 to 3,632,232
_3460
Psest_3461: Psest_3461 - Diacylglycerol kinase, at 3,632,264 to 3,632,659
_3461
Psest_3462: Psest_3462 - Lipopolysaccharide kinase (Kdo/WaaP) family., at 3,632,649 to 3,633,368
_3462
Psest_3463: Psest_3463 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 3,633,371 to 3,634,048
_3463
Psest_3464: Psest_3464 - Signal transduction histidine kinase, at 3,634,130 to 3,635,407
_3464
Position (kb)
3632
3633
3634 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3631.844 kb on + strand, within Psest_3460 at 3631.845 kb on - strand, within Psest_3460 at 3631.845 kb on - strand, within Psest_3460 at 3631.887 kb on - strand, within Psest_3460 at 3631.887 kb on - strand, within Psest_3460 at 3631.983 kb on + strand, within Psest_3460 at 3632.015 kb on + strand, within Psest_3460 at 3632.015 kb on + strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.016 kb on - strand, within Psest_3460 at 3632.105 kb on + strand at 3632.106 kb on - strand at 3632.106 kb on - strand at 3632.106 kb on - strand at 3632.965 kb on + strand, within Psest_3462 at 3632.969 kb on - strand, within Psest_3462 at 3632.969 kb on - strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.076 kb on + strand, within Psest_3462 at 3633.077 kb on - strand, within Psest_3462 at 3633.077 kb on - strand, within Psest_3462 at 3633.077 kb on - strand, within Psest_3462 at 3633.077 kb on - strand, within Psest_3462 at 3633.302 kb on + strand at 3633.393 kb on + strand at 3633.394 kb on - strand at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.558 kb on + strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.559 kb on - strand, within Psest_3463 at 3633.982 kb on - strand at 3633.982 kb on - strand at 3633.988 kb on - strand at 3634.005 kb on + strand at 3634.005 kb on + strand at 3634.005 kb on + strand at 3634.006 kb on - strand at 3634.006 kb on - strand at 3634.006 kb on - strand at 3634.006 kb on - strand at 3634.006 kb on - strand at 3634.006 kb on - strand at 3634.222 kb on + strand at 3634.223 kb on - strand at 3634.223 kb on - strand at 3634.223 kb on - strand at 3634.223 kb on - strand at 3634.223 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,631,844 + Psest_3460 0.82 -0.2 3,631,845 - Psest_3460 0.82 -2.8 3,631,845 - Psest_3460 0.82 -0.7 3,631,887 - Psest_3460 0.84 +0.7 3,631,887 - Psest_3460 0.84 +0.4 3,631,983 + Psest_3460 0.88 +0.1 3,632,015 + Psest_3460 0.90 -0.6 3,632,015 + Psest_3460 0.90 -0.4 3,632,016 - Psest_3460 0.90 +1.2 3,632,016 - Psest_3460 0.90 +0.6 3,632,016 - Psest_3460 0.90 +1.1 3,632,016 - Psest_3460 0.90 -0.3 3,632,016 - Psest_3460 0.90 -0.9 3,632,016 - Psest_3460 0.90 +0.2 3,632,016 - Psest_3460 0.90 -2.2 3,632,105 + -0.6 3,632,106 - +1.1 3,632,106 - +0.5 3,632,106 - -1.0 3,632,965 + Psest_3462 0.44 -0.2 3,632,969 - Psest_3462 0.44 +0.2 3,632,969 - Psest_3462 0.44 +1.5 3,633,076 + Psest_3462 0.59 +0.4 3,633,076 + Psest_3462 0.59 -0.8 3,633,076 + Psest_3462 0.59 +0.6 3,633,076 + Psest_3462 0.59 +3.0 3,633,076 + Psest_3462 0.59 -1.2 3,633,077 - Psest_3462 0.59 -0.7 3,633,077 - Psest_3462 0.59 +0.2 3,633,077 - Psest_3462 0.59 +0.8 3,633,077 - Psest_3462 0.59 -0.3 3,633,302 + +1.6 3,633,393 + +0.8 3,633,394 - +1.7 3,633,558 + Psest_3463 0.28 +2.2 3,633,558 + Psest_3463 0.28 -0.7 3,633,558 + Psest_3463 0.28 +0.5 3,633,558 + Psest_3463 0.28 -0.7 3,633,558 + Psest_3463 0.28 -0.1 3,633,558 + Psest_3463 0.28 +0.7 3,633,558 + Psest_3463 0.28 +1.4 3,633,558 + Psest_3463 0.28 +0.4 3,633,558 + Psest_3463 0.28 -0.5 3,633,558 + Psest_3463 0.28 -0.1 3,633,558 + Psest_3463 0.28 -0.8 3,633,559 - Psest_3463 0.28 -1.8 3,633,559 - Psest_3463 0.28 +0.4 3,633,559 - Psest_3463 0.28 +2.6 3,633,559 - Psest_3463 0.28 +0.4 3,633,559 - Psest_3463 0.28 -1.0 3,633,559 - Psest_3463 0.28 -2.9 3,633,559 - Psest_3463 0.28 +1.3 3,633,559 - Psest_3463 0.28 +2.6 3,633,559 - Psest_3463 0.28 +0.2 3,633,559 - Psest_3463 0.28 +1.5 3,633,559 - Psest_3463 0.28 +0.2 3,633,982 - +1.2 3,633,982 - -1.0 3,633,988 - -0.7 3,634,005 + +1.0 3,634,005 + +0.0 3,634,005 + +0.1 3,634,006 - -0.7 3,634,006 - -0.8 3,634,006 - -2.9 3,634,006 - +0.2 3,634,006 - +0.4 3,634,006 - -0.4 3,634,222 + +0.6 3,634,223 - -0.9 3,634,223 - -1.3 3,634,223 - +0.7 3,634,223 - -0.1 3,634,223 - +1.9
Or see this region's nucleotide sequence