Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3437 and Psest_3438 are separated by 266 nucleotides Psest_3438 and Psest_3439 are separated by 114 nucleotides Psest_3439 and Psest_3440 are separated by 95 nucleotides
Psest_3437: Psest_3437 - diguanylate cyclase (GGDEF) domain, at 3,606,759 to 3,607,544
_3437
Psest_3438: Psest_3438 - Glutamate dehydrogenase/leucine dehydrogenase, at 3,607,811 to 3,609,148
_3438
Psest_3439: Psest_3439 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 3,609,263 to 3,610,039
_3439
Psest_3440: Psest_3440 - 16S RNA G1207 methylase RsmC, at 3,610,135 to 3,611,262
_3440
Position (kb)
3607
3608
3609
3610 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 3607.140 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.461 kb on + strand, within Psest_3437 at 3607.462 kb on - strand, within Psest_3437 at 3607.774 kb on + strand at 3607.807 kb on - strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.937 kb on + strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3607.938 kb on - strand at 3608.075 kb on + strand, within Psest_3438 at 3608.075 kb on + strand, within Psest_3438 at 3608.076 kb on - strand, within Psest_3438 at 3608.351 kb on + strand, within Psest_3438 at 3608.351 kb on + strand, within Psest_3438 at 3608.352 kb on - strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.453 kb on + strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.454 kb on - strand, within Psest_3438 at 3608.541 kb on - strand, within Psest_3438 at 3608.646 kb on - strand, within Psest_3438 at 3608.714 kb on + strand, within Psest_3438 at 3608.715 kb on - strand, within Psest_3438 at 3608.901 kb on - strand, within Psest_3438 at 3608.901 kb on - strand, within Psest_3438 at 3609.077 kb on + strand at 3609.077 kb on + strand at 3609.077 kb on + strand at 3609.077 kb on + strand at 3609.078 kb on - strand at 3609.271 kb on - strand at 3609.271 kb on - strand at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.505 kb on - strand, within Psest_3439 at 3609.570 kb on + strand, within Psest_3439 at 3609.571 kb on - strand, within Psest_3439 at 3609.598 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.600 kb on + strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.601 kb on - strand, within Psest_3439 at 3609.867 kb on + strand, within Psest_3439 at 3609.867 kb on + strand, within Psest_3439 at 3609.884 kb on - strand, within Psest_3439 at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.039 kb on + strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.040 kb on - strand at 3610.098 kb on + strand at 3610.098 kb on + strand at 3610.099 kb on - strand at 3610.140 kb on + strand at 3610.141 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,607,140 + Psest_3437 0.48 -2.1 3,607,461 + Psest_3437 0.89 +0.5 3,607,461 + Psest_3437 0.89 -1.4 3,607,461 + Psest_3437 0.89 -0.8 3,607,461 + Psest_3437 0.89 +0.5 3,607,461 + Psest_3437 0.89 +0.3 3,607,462 - Psest_3437 0.89 +0.2 3,607,774 + +0.7 3,607,807 - -0.8 3,607,937 + -0.5 3,607,937 + +0.6 3,607,937 + +0.1 3,607,937 + +2.2 3,607,937 + +1.9 3,607,937 + -2.6 3,607,937 + +0.1 3,607,937 + -1.4 3,607,937 + -0.0 3,607,937 + +0.8 3,607,938 - +1.8 3,607,938 - +0.9 3,607,938 - -1.1 3,607,938 - +0.4 3,607,938 - -0.5 3,607,938 - +0.6 3,607,938 - +2.0 3,607,938 - -1.0 3,607,938 - +0.7 3,608,075 + Psest_3438 0.20 -2.8 3,608,075 + Psest_3438 0.20 -2.4 3,608,076 - Psest_3438 0.20 +0.8 3,608,351 + Psest_3438 0.40 -2.8 3,608,351 + Psest_3438 0.40 +1.5 3,608,352 - Psest_3438 0.40 -0.1 3,608,453 + Psest_3438 0.48 -1.2 3,608,453 + Psest_3438 0.48 +2.2 3,608,453 + Psest_3438 0.48 +0.9 3,608,453 + Psest_3438 0.48 +2.0 3,608,453 + Psest_3438 0.48 +0.6 3,608,454 - Psest_3438 0.48 -2.2 3,608,454 - Psest_3438 0.48 +1.7 3,608,454 - Psest_3438 0.48 -0.9 3,608,454 - Psest_3438 0.48 +0.7 3,608,454 - Psest_3438 0.48 +1.3 3,608,541 - Psest_3438 0.55 +0.5 3,608,646 - Psest_3438 0.62 -0.9 3,608,714 + Psest_3438 0.67 +0.4 3,608,715 - Psest_3438 0.68 +0.4 3,608,901 - Psest_3438 0.81 -0.1 3,608,901 - Psest_3438 0.81 -0.1 3,609,077 + +0.4 3,609,077 + -0.9 3,609,077 + -1.4 3,609,077 + -1.2 3,609,078 - +0.3 3,609,271 - +0.9 3,609,271 - -0.9 3,609,505 - Psest_3439 0.31 +1.9 3,609,505 - Psest_3439 0.31 +0.4 3,609,505 - Psest_3439 0.31 -0.3 3,609,505 - Psest_3439 0.31 -2.2 3,609,570 + Psest_3439 0.40 -0.4 3,609,571 - Psest_3439 0.40 +0.0 3,609,598 + Psest_3439 0.43 +0.8 3,609,600 + Psest_3439 0.43 +1.9 3,609,600 + Psest_3439 0.43 -0.9 3,609,600 + Psest_3439 0.43 -1.8 3,609,601 - Psest_3439 0.44 -0.2 3,609,601 - Psest_3439 0.44 -0.3 3,609,601 - Psest_3439 0.44 -1.6 3,609,601 - Psest_3439 0.44 -0.3 3,609,601 - Psest_3439 0.44 +0.8 3,609,867 + Psest_3439 0.78 -1.9 3,609,867 + Psest_3439 0.78 -0.0 3,609,884 - Psest_3439 0.80 -1.5 3,610,039 + +0.9 3,610,039 + -0.3 3,610,039 + +0.7 3,610,039 + -2.6 3,610,040 - -0.8 3,610,040 - -0.3 3,610,040 - +5.3 3,610,040 - -0.1 3,610,040 - -1.2 3,610,098 + -0.3 3,610,098 + -1.6 3,610,099 - +2.1 3,610,140 + -0.2 3,610,141 - -1.0
Or see this region's nucleotide sequence