Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3212

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3210 and Psest_3211 are separated by 137 nucleotidesPsest_3211 and Psest_3212 are separated by 114 nucleotidesPsest_3212 and Psest_3213 are separated by 237 nucleotides Psest_3210: Psest_3210 - Transcriptional regulator, at 3,378,815 to 3,379,474 _3210 Psest_3211: Psest_3211 - Glutathione peroxidase, at 3,379,612 to 3,380,094 _3211 Psest_3212: Psest_3212 - FKBP-type peptidyl-prolyl cis-trans isomerases 2, at 3,380,209 to 3,380,694 _3212 Psest_3213: Psest_3213 - acetate kinase, at 3,380,932 to 3,382,119 _3213 Position (kb) 3380 3381Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.284 kb on + strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.285 kb on - strand, within Psest_3210at 3379.290 kb on + strand, within Psest_3210at 3379.290 kb on + strand, within Psest_3210at 3379.290 kb on + strand, within Psest_3210at 3379.290 kb on + strand, within Psest_3210at 3379.290 kb on + strand, within Psest_3210at 3379.291 kb on - strand, within Psest_3210at 3379.291 kb on - strand, within Psest_3210at 3379.291 kb on - strand, within Psest_3210at 3379.291 kb on - strand, within Psest_3210at 3379.291 kb on - strand, within Psest_3210at 3379.332 kb on + strand, within Psest_3210at 3379.332 kb on + strand, within Psest_3210at 3379.332 kb on + strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.333 kb on - strand, within Psest_3210at 3379.338 kb on + strand, within Psest_3210at 3379.339 kb on - strand, within Psest_3210at 3379.339 kb on - strand, within Psest_3210at 3379.339 kb on - strand, within Psest_3210at 3379.339 kb on - strand, within Psest_3210at 3379.485 kb on + strandat 3379.839 kb on - strand, within Psest_3211at 3379.940 kb on + strand, within Psest_3211at 3380.356 kb on + strand, within Psest_3212at 3380.356 kb on + strand, within Psest_3212at 3380.356 kb on + strand, within Psest_3212at 3380.356 kb on + strand, within Psest_3212at 3380.357 kb on - strand, within Psest_3212at 3380.357 kb on - strand, within Psest_3212at 3380.357 kb on - strand, within Psest_3212at 3380.357 kb on - strand, within Psest_3212at 3380.357 kb on - strand, within Psest_3212at 3380.357 kb on - strand, within Psest_3212at 3380.464 kb on - strand, within Psest_3212at 3380.483 kb on + strand, within Psest_3212at 3380.484 kb on - strand, within Psest_3212at 3380.595 kb on - strand, within Psest_3212at 3380.657 kb on + strandat 3380.680 kb on - strandat 3380.809 kb on + strandat 3380.809 kb on + strandat 3380.809 kb on + strandat 3380.809 kb on + strandat 3380.810 kb on - strandat 3380.810 kb on - strandat 3380.810 kb on - strandat 3380.810 kb on - strandat 3380.810 kb on - strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.822 kb on + strandat 3380.823 kb on - strandat 3380.823 kb on - strandat 3380.823 kb on - strandat 3380.823 kb on - strandat 3380.823 kb on - strandat 3380.823 kb on - strandat 3380.823 kb on - strandat 3380.830 kb on + strandat 3380.831 kb on - strandat 3380.912 kb on + strandat 3380.913 kb on - strandat 3380.943 kb on + strandat 3380.943 kb on + strandat 3380.958 kb on + strandat 3380.959 kb on - strandat 3380.959 kb on - strandat 3381.020 kb on + strandat 3381.021 kb on - strandat 3381.021 kb on - strandat 3381.350 kb on + strand, within Psest_3213at 3381.351 kb on - strand, within Psest_3213at 3381.351 kb on - strand, within Psest_3213at 3381.351 kb on - strand, within Psest_3213at 3381.424 kb on + strand, within Psest_3213at 3381.425 kb on - strand, within Psest_3213at 3381.425 kb on - strand, within Psest_3213at 3381.425 kb on - strand, within Psest_3213at 3381.425 kb on - strand, within Psest_3213at 3381.425 kb on - strand, within Psest_3213at 3381.522 kb on + strand, within Psest_3213at 3381.522 kb on + strand, within Psest_3213at 3381.523 kb on - strand, within Psest_3213at 3381.523 kb on - strand, within Psest_3213at 3381.523 kb on - strand, within Psest_3213

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,379,284 + Psest_3210 0.71 -0.2
3,379,284 + Psest_3210 0.71 -1.2
3,379,284 + Psest_3210 0.71 +0.4
3,379,284 + Psest_3210 0.71 +0.1
3,379,284 + Psest_3210 0.71 -1.2
3,379,284 + Psest_3210 0.71 -2.8
3,379,284 + Psest_3210 0.71 -0.4
3,379,284 + Psest_3210 0.71 -3.7
3,379,284 + Psest_3210 0.71 +0.5
3,379,284 + Psest_3210 0.71 -1.1
3,379,284 + Psest_3210 0.71 +0.4
3,379,284 + Psest_3210 0.71 -1.0
3,379,284 + Psest_3210 0.71 +0.2
3,379,284 + Psest_3210 0.71 +1.0
3,379,285 - Psest_3210 0.71 +1.1
3,379,285 - Psest_3210 0.71 -0.2
3,379,285 - Psest_3210 0.71 +0.0
3,379,285 - Psest_3210 0.71 -0.4
3,379,285 - Psest_3210 0.71 -0.5
3,379,285 - Psest_3210 0.71 +0.6
3,379,285 - Psest_3210 0.71 -0.7
3,379,285 - Psest_3210 0.71 -2.0
3,379,285 - Psest_3210 0.71 +0.7
3,379,285 - Psest_3210 0.71 -0.9
3,379,285 - Psest_3210 0.71 -1.7
3,379,285 - Psest_3210 0.71 +0.2
3,379,290 + Psest_3210 0.72 +0.4
3,379,290 + Psest_3210 0.72 +0.4
3,379,290 + Psest_3210 0.72 -0.6
3,379,290 + Psest_3210 0.72 -0.9
3,379,290 + Psest_3210 0.72 +0.4
3,379,291 - Psest_3210 0.72 -1.0
3,379,291 - Psest_3210 0.72 -1.5
3,379,291 - Psest_3210 0.72 +0.8
3,379,291 - Psest_3210 0.72 +0.5
3,379,291 - Psest_3210 0.72 +0.1
3,379,332 + Psest_3210 0.78 -0.1
3,379,332 + Psest_3210 0.78 -2.5
3,379,332 + Psest_3210 0.78 -1.8
3,379,333 - Psest_3210 0.78 +0.2
3,379,333 - Psest_3210 0.78 -1.8
3,379,333 - Psest_3210 0.78 -0.2
3,379,333 - Psest_3210 0.78 +0.4
3,379,333 - Psest_3210 0.78 -0.5
3,379,333 - Psest_3210 0.78 +1.9
3,379,333 - Psest_3210 0.78 -0.0
3,379,333 - Psest_3210 0.78 +0.1
3,379,333 - Psest_3210 0.78 -0.3
3,379,333 - Psest_3210 0.78 -2.9
3,379,338 + Psest_3210 0.79 -1.8
3,379,339 - Psest_3210 0.79 -1.8
3,379,339 - Psest_3210 0.79 +0.3
3,379,339 - Psest_3210 0.79 +1.3
3,379,339 - Psest_3210 0.79 -0.1
3,379,485 + -1.6
3,379,839 - Psest_3211 0.47 +0.7
3,379,940 + Psest_3211 0.68 +0.1
3,380,356 + Psest_3212 0.30 +1.2
3,380,356 + Psest_3212 0.30 +2.2
3,380,356 + Psest_3212 0.30 +0.3
3,380,356 + Psest_3212 0.30 +2.4
3,380,357 - Psest_3212 0.30 -0.8
3,380,357 - Psest_3212 0.30 +1.4
3,380,357 - Psest_3212 0.30 +0.7
3,380,357 - Psest_3212 0.30 +4.2
3,380,357 - Psest_3212 0.30 +1.4
3,380,357 - Psest_3212 0.30 -0.9
3,380,464 - Psest_3212 0.52 -1.6
3,380,483 + Psest_3212 0.56 -0.5
3,380,484 - Psest_3212 0.57 +1.4
3,380,595 - Psest_3212 0.79 +3.1
3,380,657 + -2.6
3,380,680 - +1.2
3,380,809 + -3.3
3,380,809 + -2.0
3,380,809 + -0.2
3,380,809 + +2.2
3,380,810 - -0.0
3,380,810 - -1.3
3,380,810 - -2.8
3,380,810 - +2.3
3,380,810 - -1.7
3,380,822 + +0.4
3,380,822 + -1.9
3,380,822 + -2.6
3,380,822 + -0.6
3,380,822 + -1.0
3,380,822 + -1.4
3,380,822 + +0.8
3,380,822 + -1.4
3,380,822 + -2.5
3,380,822 + -3.2
3,380,823 - +0.5
3,380,823 - +0.8
3,380,823 - +0.1
3,380,823 - -0.1
3,380,823 - +0.3
3,380,823 - -1.7
3,380,823 - +1.8
3,380,830 + -2.0
3,380,831 - +0.5
3,380,912 + +0.4
3,380,913 - +0.3
3,380,943 + +0.1
3,380,943 + +0.4
3,380,958 + +1.7
3,380,959 - -2.0
3,380,959 - +0.3
3,381,020 + +0.0
3,381,021 - -1.0
3,381,021 - +1.3
3,381,350 + Psest_3213 0.35 -0.1
3,381,351 - Psest_3213 0.35 +2.6
3,381,351 - Psest_3213 0.35 +0.0
3,381,351 - Psest_3213 0.35 +0.5
3,381,424 + Psest_3213 0.41 +1.1
3,381,425 - Psest_3213 0.41 -0.8
3,381,425 - Psest_3213 0.41 +0.6
3,381,425 - Psest_3213 0.41 -1.3
3,381,425 - Psest_3213 0.41 -1.5
3,381,425 - Psest_3213 0.41 +0.7
3,381,522 + Psest_3213 0.50 -2.2
3,381,522 + Psest_3213 0.50 +0.4
3,381,523 - Psest_3213 0.50 +0.9
3,381,523 - Psest_3213 0.50 -2.7
3,381,523 - Psest_3213 0.50 -1.6

Or see this region's nucleotide sequence