Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3144 and Psest_3145 are separated by 626 nucleotides Psest_3145 and Psest_3146 overlap by 4 nucleotides Psest_3146 and Psest_3147 overlap by 1 nucleotides Psest_3147 and Psest_3148 overlap by 20 nucleotides Psest_3148 and Psest_3149 are separated by 10 nucleotides Psest_3149 and Psest_3150 overlap by 32 nucleotides
Psest_3144: Psest_3144 - Phage integrase family., at 3,317,186 to 3,318,724
_3144
Psest_3145: Psest_3145 - hypothetical protein, at 3,319,351 to 3,319,635
_3145
Psest_3146: Psest_3146 - hypothetical protein, at 3,319,632 to 3,319,844
_3146
Psest_3147: Psest_3147 - hypothetical protein, at 3,319,844 to 3,320,017
_3147
Psest_3148: Psest_3148 - hypothetical protein, at 3,319,998 to 3,320,177
_3148
Psest_3149: Psest_3149 - hypothetical protein, at 3,320,188 to 3,320,370
_3149
Psest_3150: Psest_3150 - hypothetical protein, at 3,320,339 to 3,321,598
_3150
Position (kb)
3319
3320 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3318.657 kb on - strand at 3318.657 kb on - strand at 3318.657 kb on - strand at 3318.657 kb on - strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.937 kb on + strand at 3318.938 kb on - strand at 3318.938 kb on - strand at 3318.938 kb on - strand at 3318.938 kb on - strand at 3318.938 kb on - strand at 3318.941 kb on + strand at 3318.942 kb on - strand at 3318.942 kb on - strand at 3318.942 kb on - strand at 3319.010 kb on + strand at 3319.113 kb on - strand at 3319.199 kb on + strand at 3319.264 kb on + strand at 3319.349 kb on + strand at 3319.454 kb on - strand, within Psest_3145 at 3319.587 kb on - strand, within Psest_3145 at 3319.689 kb on - strand, within Psest_3146 at 3319.768 kb on + strand, within Psest_3146 at 3319.793 kb on - strand, within Psest_3146 at 3319.827 kb on - strand at 3319.827 kb on - strand at 3319.827 kb on - strand at 3320.088 kb on - strand, within Psest_3148 at 3320.461 kb on + strand at 3320.540 kb on + strand, within Psest_3150 at 3320.541 kb on - strand, within Psest_3150 at 3320.638 kb on + strand, within Psest_3150 at 3320.665 kb on + strand, within Psest_3150 at 3320.666 kb on - strand, within Psest_3150 at 3320.679 kb on + strand, within Psest_3150 at 3320.701 kb on - strand, within Psest_3150 at 3320.736 kb on - strand, within Psest_3150 at 3320.802 kb on + strand, within Psest_3150
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,318,657 - -0.0 3,318,657 - -0.9 3,318,657 - +0.2 3,318,657 - +0.8 3,318,937 + -2.2 3,318,937 + -0.3 3,318,937 + +0.9 3,318,937 + +0.8 3,318,937 + +0.4 3,318,937 + -0.1 3,318,937 + +0.9 3,318,937 + -1.5 3,318,937 + +1.6 3,318,937 + -1.2 3,318,938 - -0.6 3,318,938 - +0.5 3,318,938 - -0.2 3,318,938 - -0.1 3,318,938 - -0.1 3,318,941 + -0.4 3,318,942 - -0.9 3,318,942 - +2.3 3,318,942 - -0.8 3,319,010 + +0.5 3,319,113 - -1.7 3,319,199 + -0.4 3,319,264 + -0.4 3,319,349 + -0.9 3,319,454 - Psest_3145 0.36 -0.9 3,319,587 - Psest_3145 0.83 -0.8 3,319,689 - Psest_3146 0.27 +1.4 3,319,768 + Psest_3146 0.64 +1.7 3,319,793 - Psest_3146 0.76 -0.9 3,319,827 - -0.1 3,319,827 - -3.5 3,319,827 - +0.2 3,320,088 - Psest_3148 0.50 +0.1 3,320,461 + -0.1 3,320,540 + Psest_3150 0.16 -0.7 3,320,541 - Psest_3150 0.16 +0.2 3,320,638 + Psest_3150 0.24 -0.3 3,320,665 + Psest_3150 0.26 -0.5 3,320,666 - Psest_3150 0.26 -0.0 3,320,679 + Psest_3150 0.27 -1.0 3,320,701 - Psest_3150 0.29 +1.3 3,320,736 - Psest_3150 0.32 -0.7 3,320,802 + Psest_3150 0.37 -0.2
Or see this region's nucleotide sequence