Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3118

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3116 and Psest_3117 overlap by 4 nucleotidesPsest_3117 and Psest_3118 are separated by 10 nucleotidesPsest_3118 and Psest_3119 are separated by 108 nucleotidesPsest_3119 and Psest_3120 are separated by 52 nucleotidesPsest_3120 and Psest_3121 are separated by 95 nucleotides Psest_3116: Psest_3116 - electron transport complex, RnfABCDGE type, G subunit, at 3,294,309 to 3,295,088 _3116 Psest_3117: Psest_3117 - electron transport complex, RnfABCDGE type, E subunit, at 3,295,085 to 3,295,798 _3117 Psest_3118: Psest_3118 - endonuclease III, at 3,295,809 to 3,296,447 _3118 Psest_3119: Psest_3119 - hypothetical protein, at 3,296,556 to 3,296,735 _3119 Psest_3120: Psest_3120 - lactoylglutathione lyase, at 3,296,788 to 3,297,180 _3120 Psest_3121: Psest_3121 - argininosuccinate synthase, at 3,297,276 to 3,298,493 _3121 Position (kb) 3295 3296 3297Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3294.900 kb on + strand, within Psest_3116at 3294.900 kb on + strand, within Psest_3116at 3294.901 kb on - strand, within Psest_3116at 3295.364 kb on + strand, within Psest_3117at 3295.365 kb on - strand, within Psest_3117at 3295.365 kb on - strand, within Psest_3117at 3295.365 kb on - strand, within Psest_3117at 3295.365 kb on - strand, within Psest_3117at 3295.373 kb on + strand, within Psest_3117at 3295.374 kb on - strand, within Psest_3117at 3295.519 kb on - strand, within Psest_3117at 3295.519 kb on - strand, within Psest_3117at 3295.628 kb on + strand, within Psest_3117at 3295.628 kb on + strand, within Psest_3117at 3295.628 kb on + strand, within Psest_3117at 3295.629 kb on - strand, within Psest_3117at 3295.884 kb on + strand, within Psest_3118at 3295.884 kb on + strand, within Psest_3118at 3295.884 kb on + strand, within Psest_3118at 3295.885 kb on - strand, within Psest_3118at 3295.885 kb on - strand, within Psest_3118at 3296.001 kb on + strand, within Psest_3118at 3296.001 kb on + strand, within Psest_3118at 3296.001 kb on + strand, within Psest_3118at 3296.001 kb on + strand, within Psest_3118at 3296.001 kb on + strand, within Psest_3118at 3296.001 kb on + strand, within Psest_3118at 3296.001 kb on + strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.002 kb on - strand, within Psest_3118at 3296.031 kb on + strand, within Psest_3118at 3296.031 kb on + strand, within Psest_3118at 3296.031 kb on + strand, within Psest_3118at 3296.032 kb on - strand, within Psest_3118at 3296.032 kb on - strand, within Psest_3118at 3296.319 kb on + strand, within Psest_3118at 3296.320 kb on - strand, within Psest_3118at 3296.320 kb on - strand, within Psest_3118at 3296.320 kb on - strand, within Psest_3118at 3296.320 kb on - strand, within Psest_3118at 3296.361 kb on + strand, within Psest_3118at 3296.362 kb on - strand, within Psest_3118at 3296.421 kb on + strandat 3296.421 kb on + strandat 3296.421 kb on + strandat 3296.421 kb on + strandat 3296.421 kb on + strandat 3296.422 kb on - strandat 3296.469 kb on - strandat 3296.513 kb on + strandat 3296.513 kb on + strandat 3296.515 kb on + strandat 3296.515 kb on + strandat 3296.515 kb on + strandat 3296.516 kb on - strandat 3296.731 kb on + strandat 3296.732 kb on - strandat 3296.933 kb on + strand, within Psest_3120at 3296.933 kb on + strand, within Psest_3120at 3296.934 kb on - strand, within Psest_3120at 3296.934 kb on - strand, within Psest_3120at 3296.934 kb on - strand, within Psest_3120at 3296.967 kb on - strand, within Psest_3120at 3296.985 kb on - strand, within Psest_3120at 3297.069 kb on + strand, within Psest_3120at 3297.122 kb on + strand, within Psest_3120at 3297.122 kb on + strand, within Psest_3120at 3297.122 kb on + strand, within Psest_3120at 3297.122 kb on + strand, within Psest_3120at 3297.122 kb on + strand, within Psest_3120at 3297.122 kb on + strand, within Psest_3120at 3297.122 kb on + strand, within Psest_3120at 3297.123 kb on - strand, within Psest_3120at 3297.123 kb on - strand, within Psest_3120at 3297.123 kb on - strand, within Psest_3120at 3297.123 kb on - strand, within Psest_3120at 3297.123 kb on - strand, within Psest_3120at 3297.139 kb on - strand, within Psest_3120at 3297.139 kb on - strand, within Psest_3120at 3297.165 kb on + strandat 3297.226 kb on + strandat 3297.226 kb on + strandat 3297.226 kb on + strandat 3297.227 kb on - strandat 3297.227 kb on - strandat 3297.227 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,294,900 + Psest_3116 0.76 +0.5
3,294,900 + Psest_3116 0.76 -0.6
3,294,901 - Psest_3116 0.76 +2.4
3,295,364 + Psest_3117 0.39 -1.4
3,295,365 - Psest_3117 0.39 +2.2
3,295,365 - Psest_3117 0.39 +1.7
3,295,365 - Psest_3117 0.39 +0.6
3,295,365 - Psest_3117 0.39 +2.6
3,295,373 + Psest_3117 0.40 +3.6
3,295,374 - Psest_3117 0.40 +2.1
3,295,519 - Psest_3117 0.61 -1.9
3,295,519 - Psest_3117 0.61 +3.1
3,295,628 + Psest_3117 0.76 +4.4
3,295,628 + Psest_3117 0.76 +2.6
3,295,628 + Psest_3117 0.76 +1.3
3,295,629 - Psest_3117 0.76 +3.7
3,295,884 + Psest_3118 0.12 +1.6
3,295,884 + Psest_3118 0.12 +0.5
3,295,884 + Psest_3118 0.12 -1.7
3,295,885 - Psest_3118 0.12 +2.9
3,295,885 - Psest_3118 0.12 -0.1
3,296,001 + Psest_3118 0.30 +1.1
3,296,001 + Psest_3118 0.30 -0.9
3,296,001 + Psest_3118 0.30 +1.1
3,296,001 + Psest_3118 0.30 -1.0
3,296,001 + Psest_3118 0.30 +1.1
3,296,001 + Psest_3118 0.30 -1.4
3,296,001 + Psest_3118 0.30 +0.6
3,296,002 - Psest_3118 0.30 -1.6
3,296,002 - Psest_3118 0.30 +0.4
3,296,002 - Psest_3118 0.30 +0.3
3,296,002 - Psest_3118 0.30 -2.2
3,296,002 - Psest_3118 0.30 +0.6
3,296,002 - Psest_3118 0.30 -1.6
3,296,002 - Psest_3118 0.30 -1.0
3,296,002 - Psest_3118 0.30 -1.3
3,296,002 - Psest_3118 0.30 +0.2
3,296,031 + Psest_3118 0.35 -1.2
3,296,031 + Psest_3118 0.35 +0.2
3,296,031 + Psest_3118 0.35 -1.1
3,296,032 - Psest_3118 0.35 -0.4
3,296,032 - Psest_3118 0.35 -0.2
3,296,319 + Psest_3118 0.80 +1.8
3,296,320 - Psest_3118 0.80 -1.0
3,296,320 - Psest_3118 0.80 -0.7
3,296,320 - Psest_3118 0.80 +0.2
3,296,320 - Psest_3118 0.80 -1.9
3,296,361 + Psest_3118 0.86 +1.9
3,296,362 - Psest_3118 0.87 -0.6
3,296,421 + -0.5
3,296,421 + -1.6
3,296,421 + -1.6
3,296,421 + -0.2
3,296,421 + -1.6
3,296,422 - +1.4
3,296,469 - -0.9
3,296,513 + +0.9
3,296,513 + +2.4
3,296,515 + -2.6
3,296,515 + +0.8
3,296,515 + -0.7
3,296,516 - -0.9
3,296,731 + +1.0
3,296,732 - -0.4
3,296,933 + Psest_3120 0.37 +1.0
3,296,933 + Psest_3120 0.37 +2.9
3,296,934 - Psest_3120 0.37 +0.7
3,296,934 - Psest_3120 0.37 -2.3
3,296,934 - Psest_3120 0.37 +1.2
3,296,967 - Psest_3120 0.46 +0.7
3,296,985 - Psest_3120 0.50 +3.7
3,297,069 + Psest_3120 0.72 -0.7
3,297,122 + Psest_3120 0.85 -1.2
3,297,122 + Psest_3120 0.85 +0.8
3,297,122 + Psest_3120 0.85 +1.7
3,297,122 + Psest_3120 0.85 -1.9
3,297,122 + Psest_3120 0.85 +0.3
3,297,122 + Psest_3120 0.85 -1.5
3,297,122 + Psest_3120 0.85 +0.2
3,297,123 - Psest_3120 0.85 -1.4
3,297,123 - Psest_3120 0.85 -0.5
3,297,123 - Psest_3120 0.85 -0.6
3,297,123 - Psest_3120 0.85 +0.5
3,297,123 - Psest_3120 0.85 -1.8
3,297,139 - Psest_3120 0.89 +0.9
3,297,139 - Psest_3120 0.89 +1.1
3,297,165 + -0.6
3,297,226 + +0.8
3,297,226 + -0.3
3,297,226 + -0.3
3,297,227 - +1.0
3,297,227 - -0.0
3,297,227 - -0.7

Or see this region's nucleotide sequence