Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3112 and Psest_3113 overlap by 4 nucleotides Psest_3113 and Psest_3114 overlap by 4 nucleotides Psest_3114 and Psest_3115 are separated by 103 nucleotides
Psest_3112: Psest_3112 - electron transport complex, RnfABCDGE type, A subunit, at 3,289,349 to 3,289,933
_3112
Psest_3113: Psest_3113 - electron transport complex, RnfABCDGE type, B subunit, at 3,289,930 to 3,290,505
_3113
Psest_3114: Psest_3114 - electron transport complex, RnfABCDGE type, C subunit, at 3,290,502 to 3,293,180
_3114
Psest_3115: Psest_3115 - electron transport complex, RnfABCDGE type, D subunit, at 3,293,284 to 3,294,312
_3115
Position (kb)
3290
3291
3292
3293
3294 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 3289.517 kb on + strand, within Psest_3112 at 3289.517 kb on + strand, within Psest_3112 at 3289.518 kb on - strand, within Psest_3112 at 3289.518 kb on - strand, within Psest_3112 at 3289.532 kb on + strand, within Psest_3112 at 3289.532 kb on + strand, within Psest_3112 at 3289.532 kb on + strand, within Psest_3112 at 3289.532 kb on + strand, within Psest_3112 at 3289.532 kb on + strand, within Psest_3112 at 3289.533 kb on - strand, within Psest_3112 at 3289.533 kb on - strand, within Psest_3112 at 3289.647 kb on - strand, within Psest_3112 at 3289.647 kb on - strand, within Psest_3112 at 3289.929 kb on + strand at 3289.929 kb on + strand at 3289.929 kb on + strand at 3289.930 kb on - strand at 3289.930 kb on - strand at 3290.142 kb on + strand, within Psest_3113 at 3290.143 kb on - strand, within Psest_3113 at 3290.143 kb on - strand, within Psest_3113 at 3290.251 kb on + strand, within Psest_3113 at 3290.340 kb on + strand, within Psest_3113 at 3290.657 kb on - strand at 3290.782 kb on + strand, within Psest_3114 at 3290.782 kb on + strand, within Psest_3114 at 3290.782 kb on + strand, within Psest_3114 at 3290.782 kb on + strand, within Psest_3114 at 3290.782 kb on + strand, within Psest_3114 at 3290.782 kb on + strand, within Psest_3114 at 3290.782 kb on + strand, within Psest_3114 at 3290.782 kb on + strand, within Psest_3114 at 3290.782 kb on + strand, within Psest_3114 at 3290.783 kb on - strand, within Psest_3114 at 3290.783 kb on - strand, within Psest_3114 at 3290.783 kb on - strand, within Psest_3114 at 3290.783 kb on - strand, within Psest_3114 at 3291.018 kb on + strand, within Psest_3114 at 3291.018 kb on + strand, within Psest_3114 at 3291.018 kb on + strand, within Psest_3114 at 3291.018 kb on + strand, within Psest_3114 at 3291.019 kb on - strand, within Psest_3114 at 3291.019 kb on - strand, within Psest_3114 at 3291.019 kb on - strand, within Psest_3114 at 3291.019 kb on - strand, within Psest_3114 at 3291.019 kb on - strand, within Psest_3114 at 3291.019 kb on - strand, within Psest_3114 at 3291.019 kb on - strand, within Psest_3114 at 3291.196 kb on + strand, within Psest_3114 at 3291.196 kb on + strand, within Psest_3114 at 3291.197 kb on - strand, within Psest_3114 at 3291.341 kb on - strand, within Psest_3114 at 3291.445 kb on + strand, within Psest_3114 at 3291.445 kb on + strand, within Psest_3114 at 3291.445 kb on + strand, within Psest_3114 at 3291.445 kb on + strand, within Psest_3114 at 3291.446 kb on - strand, within Psest_3114 at 3291.446 kb on - strand, within Psest_3114 at 3291.753 kb on + strand, within Psest_3114 at 3291.753 kb on + strand, within Psest_3114 at 3291.753 kb on + strand, within Psest_3114 at 3291.754 kb on - strand, within Psest_3114 at 3291.787 kb on - strand, within Psest_3114 at 3291.787 kb on - strand, within Psest_3114 at 3291.787 kb on - strand, within Psest_3114 at 3291.787 kb on - strand, within Psest_3114 at 3291.790 kb on - strand, within Psest_3114 at 3291.852 kb on - strand, within Psest_3114 at 3291.852 kb on - strand, within Psest_3114 at 3293.000 kb on - strand at 3293.117 kb on - strand at 3293.166 kb on + strand at 3293.247 kb on - strand at 3293.665 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.807 kb on + strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.808 kb on - strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.984 kb on + strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3293.985 kb on - strand, within Psest_3115 at 3294.154 kb on - strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.163 kb on + strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115 at 3294.164 kb on - strand, within Psest_3115
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 3,289,517 + Psest_3112 0.29 +3.2 3,289,517 + Psest_3112 0.29 +4.2 3,289,518 - Psest_3112 0.29 +1.4 3,289,518 - Psest_3112 0.29 +2.9 3,289,532 + Psest_3112 0.31 +3.2 3,289,532 + Psest_3112 0.31 +4.1 3,289,532 + Psest_3112 0.31 +2.0 3,289,532 + Psest_3112 0.31 +2.6 3,289,532 + Psest_3112 0.31 +2.3 3,289,533 - Psest_3112 0.31 +3.1 3,289,533 - Psest_3112 0.31 +4.0 3,289,647 - Psest_3112 0.51 +3.9 3,289,647 - Psest_3112 0.51 +2.4 3,289,929 + +3.4 3,289,929 + +2.6 3,289,929 + +2.2 3,289,930 - +3.5 3,289,930 - +3.1 3,290,142 + Psest_3113 0.37 +2.4 3,290,143 - Psest_3113 0.37 +2.4 3,290,143 - Psest_3113 0.37 +0.8 3,290,251 + Psest_3113 0.56 +3.4 3,290,340 + Psest_3113 0.71 +3.6 3,290,657 - +2.6 3,290,782 + Psest_3114 0.10 +3.1 3,290,782 + Psest_3114 0.10 +1.4 3,290,782 + Psest_3114 0.10 +1.5 3,290,782 + Psest_3114 0.10 +0.4 3,290,782 + Psest_3114 0.10 +3.1 3,290,782 + Psest_3114 0.10 +0.2 3,290,782 + Psest_3114 0.10 +4.8 3,290,782 + Psest_3114 0.10 +2.4 3,290,782 + Psest_3114 0.10 +1.9 3,290,783 - Psest_3114 0.10 +3.5 3,290,783 - Psest_3114 0.10 +3.6 3,290,783 - Psest_3114 0.10 +1.5 3,290,783 - Psest_3114 0.10 +5.2 3,291,018 + Psest_3114 0.19 +3.4 3,291,018 + Psest_3114 0.19 +3.2 3,291,018 + Psest_3114 0.19 +4.0 3,291,018 + Psest_3114 0.19 +4.1 3,291,019 - Psest_3114 0.19 +4.8 3,291,019 - Psest_3114 0.19 +0.4 3,291,019 - Psest_3114 0.19 +4.0 3,291,019 - Psest_3114 0.19 +2.7 3,291,019 - Psest_3114 0.19 +2.4 3,291,019 - Psest_3114 0.19 +3.4 3,291,019 - Psest_3114 0.19 +2.7 3,291,196 + Psest_3114 0.26 +0.7 3,291,196 + Psest_3114 0.26 +6.3 3,291,197 - Psest_3114 0.26 +2.4 3,291,341 - Psest_3114 0.31 +4.9 3,291,445 + Psest_3114 0.35 +2.6 3,291,445 + Psest_3114 0.35 +4.2 3,291,445 + Psest_3114 0.35 +3.4 3,291,445 + Psest_3114 0.35 +4.4 3,291,446 - Psest_3114 0.35 +3.9 3,291,446 - Psest_3114 0.35 +5.0 3,291,753 + Psest_3114 0.47 +2.1 3,291,753 + Psest_3114 0.47 +3.0 3,291,753 + Psest_3114 0.47 +3.2 3,291,754 - Psest_3114 0.47 +3.4 3,291,787 - Psest_3114 0.48 -0.4 3,291,787 - Psest_3114 0.48 +4.5 3,291,787 - Psest_3114 0.48 +3.5 3,291,787 - Psest_3114 0.48 +1.8 3,291,790 - Psest_3114 0.48 +2.0 3,291,852 - Psest_3114 0.50 +3.2 3,291,852 - Psest_3114 0.50 +2.8 3,293,000 - +1.5 3,293,117 - +2.3 3,293,166 + -0.0 3,293,247 - +4.3 3,293,665 + Psest_3115 0.37 +2.7 3,293,807 + Psest_3115 0.51 +1.4 3,293,807 + Psest_3115 0.51 +0.2 3,293,807 + Psest_3115 0.51 +3.9 3,293,807 + Psest_3115 0.51 -0.9 3,293,807 + Psest_3115 0.51 +0.9 3,293,807 + Psest_3115 0.51 +3.8 3,293,808 - Psest_3115 0.51 -0.6 3,293,808 - Psest_3115 0.51 +1.7 3,293,808 - Psest_3115 0.51 +1.0 3,293,808 - Psest_3115 0.51 +1.4 3,293,808 - Psest_3115 0.51 +2.3 3,293,984 + Psest_3115 0.68 +2.8 3,293,984 + Psest_3115 0.68 +2.0 3,293,984 + Psest_3115 0.68 +2.0 3,293,984 + Psest_3115 0.68 +3.7 3,293,985 - Psest_3115 0.68 +2.5 3,293,985 - Psest_3115 0.68 +3.4 3,293,985 - Psest_3115 0.68 +4.2 3,293,985 - Psest_3115 0.68 +2.0 3,293,985 - Psest_3115 0.68 -0.2 3,294,154 - Psest_3115 0.85 +5.1 3,294,163 + Psest_3115 0.85 +0.1 3,294,163 + Psest_3115 0.85 +2.0 3,294,163 + Psest_3115 0.85 +3.2 3,294,163 + Psest_3115 0.85 +4.3 3,294,163 + Psest_3115 0.85 +4.6 3,294,163 + Psest_3115 0.85 +4.6 3,294,163 + Psest_3115 0.85 +1.0 3,294,163 + Psest_3115 0.85 +2.1 3,294,164 - Psest_3115 0.86 +4.1 3,294,164 - Psest_3115 0.86 +1.6 3,294,164 - Psest_3115 0.86 +2.4 3,294,164 - Psest_3115 0.86 +3.7 3,294,164 - Psest_3115 0.86 +3.6 3,294,164 - Psest_3115 0.86 +2.9
Or see this region's nucleotide sequence