Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2863

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2861 and Psest_2862 are separated by 45 nucleotidesPsest_2862 and Psest_2863 are separated by 113 nucleotidesPsest_2863 and Psest_2864 are separated by 24 nucleotidesPsest_2864 and Psest_2865 are separated by 245 nucleotides Psest_2861: Psest_2861 - Uncharacterized protein conserved in bacteria, at 3,051,705 to 3,052,190 _2861 Psest_2862: Psest_2862 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 3,052,236 to 3,053,012 _2862 Psest_2863: Psest_2863 - Transcriptional regulator, at 3,053,126 to 3,054,052 _2863 Psest_2864: Psest_2864 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 3,054,077 to 3,054,727 _2864 Psest_2865: Psest_2865 - Predicted permease, DMT superfamily, at 3,054,973 to 3,055,884 _2865 Position (kb) 3053 3054 3055Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3052.182 kb on + strandat 3052.182 kb on + strandat 3052.183 kb on - strandat 3052.183 kb on - strandat 3052.183 kb on - strandat 3052.183 kb on - strandat 3052.268 kb on - strandat 3052.268 kb on - strandat 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.576 kb on + strand, within Psest_2862at 3052.618 kb on + strand, within Psest_2862at 3052.618 kb on + strand, within Psest_2862at 3052.619 kb on - strand, within Psest_2862at 3052.675 kb on - strand, within Psest_2862at 3052.675 kb on - strand, within Psest_2862at 3052.681 kb on + strand, within Psest_2862at 3052.681 kb on + strand, within Psest_2862at 3052.682 kb on - strand, within Psest_2862at 3052.682 kb on - strand, within Psest_2862at 3052.682 kb on - strand, within Psest_2862at 3052.826 kb on - strand, within Psest_2862at 3052.835 kb on - strand, within Psest_2862at 3052.835 kb on - strand, within Psest_2862at 3052.835 kb on - strand, within Psest_2862at 3052.850 kb on + strand, within Psest_2862at 3052.851 kb on - strand, within Psest_2862at 3052.855 kb on + strand, within Psest_2862at 3052.856 kb on - strand, within Psest_2862at 3053.049 kb on + strandat 3053.065 kb on - strandat 3053.065 kb on - strandat 3053.121 kb on + strandat 3053.435 kb on + strand, within Psest_2863at 3053.435 kb on + strand, within Psest_2863at 3053.435 kb on + strand, within Psest_2863at 3053.435 kb on + strand, within Psest_2863at 3053.436 kb on - strand, within Psest_2863at 3053.622 kb on + strand, within Psest_2863at 3053.795 kb on - strand, within Psest_2863at 3053.795 kb on - strand, within Psest_2863at 3053.930 kb on + strand, within Psest_2863at 3053.930 kb on + strand, within Psest_2863at 3053.930 kb on + strand, within Psest_2863at 3053.931 kb on - strand, within Psest_2863at 3053.931 kb on - strand, within Psest_2863at 3053.931 kb on - strand, within Psest_2863at 3053.931 kb on - strand, within Psest_2863at 3053.955 kb on - strand, within Psest_2863at 3054.107 kb on + strandat 3054.107 kb on + strandat 3054.107 kb on + strandat 3054.133 kb on + strandat 3054.134 kb on - strandat 3054.134 kb on - strandat 3054.499 kb on - strand, within Psest_2864at 3054.635 kb on + strand, within Psest_2864at 3054.635 kb on + strand, within Psest_2864at 3054.636 kb on - strand, within Psest_2864at 3054.636 kb on - strand, within Psest_2864at 3054.636 kb on - strand, within Psest_2864at 3054.636 kb on - strand, within Psest_2864at 3054.636 kb on - strand, within Psest_2864at 3054.710 kb on + strandat 3054.711 kb on - strandat 3054.711 kb on - strandat 3054.711 kb on - strandat 3054.711 kb on - strandat 3054.711 kb on - strandat 3054.711 kb on - strandat 3054.747 kb on - strandat 3054.837 kb on - strandat 3054.873 kb on + strandat 3054.873 kb on + strandat 3054.873 kb on + strandat 3054.873 kb on + strandat 3054.874 kb on - strandat 3054.913 kb on - strandat 3054.913 kb on - strandat 3054.913 kb on - strandat 3054.913 kb on - strandat 3054.913 kb on - strandat 3054.913 kb on - strandat 3054.913 kb on - strandat 3054.913 kb on - strandat 3054.913 kb on - strandat 3054.934 kb on + strandat 3054.934 kb on + strandat 3054.937 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,052,182 + -0.7
3,052,182 + +0.7
3,052,183 - -0.8
3,052,183 - -0.2
3,052,183 - +0.2
3,052,183 - +1.0
3,052,268 - +1.6
3,052,268 - +2.7
3,052,486 + Psest_2862 0.32 +3.3
3,052,486 + Psest_2862 0.32 +3.1
3,052,486 + Psest_2862 0.32 +1.4
3,052,486 + Psest_2862 0.32 +5.0
3,052,486 + Psest_2862 0.32 +3.6
3,052,486 + Psest_2862 0.32 +1.5
3,052,486 + Psest_2862 0.32 +4.0
3,052,486 + Psest_2862 0.32 +2.7
3,052,486 + Psest_2862 0.32 +4.2
3,052,486 + Psest_2862 0.32 +4.0
3,052,487 - Psest_2862 0.32 +1.9
3,052,487 - Psest_2862 0.32 +4.6
3,052,487 - Psest_2862 0.32 +1.4
3,052,487 - Psest_2862 0.32 +4.0
3,052,487 - Psest_2862 0.32 +3.0
3,052,487 - Psest_2862 0.32 +3.4
3,052,487 - Psest_2862 0.32 +4.4
3,052,487 - Psest_2862 0.32 +1.8
3,052,487 - Psest_2862 0.32 +3.5
3,052,487 - Psest_2862 0.32 +1.4
3,052,576 + Psest_2862 0.44 +3.8
3,052,618 + Psest_2862 0.49 +1.6
3,052,618 + Psest_2862 0.49 +1.4
3,052,619 - Psest_2862 0.49 -1.0
3,052,675 - Psest_2862 0.56 +1.2
3,052,675 - Psest_2862 0.56 +2.0
3,052,681 + Psest_2862 0.57 +3.5
3,052,681 + Psest_2862 0.57 +5.3
3,052,682 - Psest_2862 0.57 +3.4
3,052,682 - Psest_2862 0.57 +3.0
3,052,682 - Psest_2862 0.57 +6.1
3,052,826 - Psest_2862 0.76 +1.7
3,052,835 - Psest_2862 0.77 +1.5
3,052,835 - Psest_2862 0.77 +0.0
3,052,835 - Psest_2862 0.77 +3.2
3,052,850 + Psest_2862 0.79 +3.9
3,052,851 - Psest_2862 0.79 +4.4
3,052,855 + Psest_2862 0.80 +2.1
3,052,856 - Psest_2862 0.80 +0.0
3,053,049 + +0.5
3,053,065 - +1.7
3,053,065 - -1.2
3,053,121 + +3.3
3,053,435 + Psest_2863 0.33 +5.1
3,053,435 + Psest_2863 0.33 +2.7
3,053,435 + Psest_2863 0.33 +3.8
3,053,435 + Psest_2863 0.33 +1.8
3,053,436 - Psest_2863 0.33 -0.4
3,053,622 + Psest_2863 0.54 +2.5
3,053,795 - Psest_2863 0.72 +0.7
3,053,795 - Psest_2863 0.72 +0.9
3,053,930 + Psest_2863 0.87 +1.4
3,053,930 + Psest_2863 0.87 +1.8
3,053,930 + Psest_2863 0.87 +3.2
3,053,931 - Psest_2863 0.87 -2.1
3,053,931 - Psest_2863 0.87 +1.4
3,053,931 - Psest_2863 0.87 +2.2
3,053,931 - Psest_2863 0.87 +1.1
3,053,955 - Psest_2863 0.89 +3.7
3,054,107 + +0.4
3,054,107 + -2.7
3,054,107 + -3.0
3,054,133 + -0.5
3,054,134 - +0.8
3,054,134 - -0.2
3,054,499 - Psest_2864 0.65 +1.0
3,054,635 + Psest_2864 0.86 +0.8
3,054,635 + Psest_2864 0.86 +0.6
3,054,636 - Psest_2864 0.86 -0.1
3,054,636 - Psest_2864 0.86 +0.8
3,054,636 - Psest_2864 0.86 -0.8
3,054,636 - Psest_2864 0.86 -0.2
3,054,636 - Psest_2864 0.86 +0.7
3,054,710 + -0.8
3,054,711 - -0.3
3,054,711 - +0.7
3,054,711 - +1.7
3,054,711 - -0.1
3,054,711 - -0.2
3,054,711 - -0.7
3,054,747 - +1.1
3,054,837 - +0.3
3,054,873 + +1.0
3,054,873 + +1.8
3,054,873 + -0.6
3,054,873 + +1.8
3,054,874 - -0.0
3,054,913 - +2.2
3,054,913 - -0.3
3,054,913 - +1.8
3,054,913 - +0.5
3,054,913 - -1.1
3,054,913 - +1.7
3,054,913 - +0.5
3,054,913 - +0.0
3,054,913 - -0.2
3,054,934 + -0.8
3,054,934 + +0.5
3,054,937 - +1.6

Or see this region's nucleotide sequence