Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2862

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2860 and Psest_2861 are separated by 1 nucleotidesPsest_2861 and Psest_2862 are separated by 45 nucleotidesPsest_2862 and Psest_2863 are separated by 113 nucleotides Psest_2860: Psest_2860 - hypothetical protein, at 3,051,206 to 3,051,703 _2860 Psest_2861: Psest_2861 - Uncharacterized protein conserved in bacteria, at 3,051,705 to 3,052,190 _2861 Psest_2862: Psest_2862 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 3,052,236 to 3,053,012 _2862 Psest_2863: Psest_2863 - Transcriptional regulator, at 3,053,126 to 3,054,052 _2863 Position (kb) 3052 3053 3054Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3051.266 kb on + strand, within Psest_2860at 3051.285 kb on + strand, within Psest_2860at 3051.285 kb on + strand, within Psest_2860at 3051.548 kb on + strand, within Psest_2860at 3051.549 kb on - strand, within Psest_2860at 3051.549 kb on - strand, within Psest_2860at 3051.549 kb on - strand, within Psest_2860at 3051.549 kb on - strand, within Psest_2860at 3051.614 kb on + strand, within Psest_2860at 3051.615 kb on - strand, within Psest_2860at 3051.629 kb on + strand, within Psest_2860at 3051.629 kb on + strand, within Psest_2860at 3051.630 kb on - strand, within Psest_2860at 3051.692 kb on + strandat 3051.692 kb on + strandat 3051.731 kb on + strandat 3051.732 kb on - strandat 3051.780 kb on + strand, within Psest_2861at 3051.780 kb on + strand, within Psest_2861at 3051.781 kb on - strand, within Psest_2861at 3051.814 kb on + strand, within Psest_2861at 3051.814 kb on + strand, within Psest_2861at 3051.840 kb on + strand, within Psest_2861at 3051.840 kb on + strand, within Psest_2861at 3051.840 kb on + strand, within Psest_2861at 3051.840 kb on + strand, within Psest_2861at 3051.840 kb on + strand, within Psest_2861at 3051.841 kb on - strand, within Psest_2861at 3051.841 kb on - strand, within Psest_2861at 3051.861 kb on + strand, within Psest_2861at 3051.861 kb on + strand, within Psest_2861at 3051.862 kb on - strand, within Psest_2861at 3051.862 kb on - strand, within Psest_2861at 3051.973 kb on + strand, within Psest_2861at 3051.973 kb on + strand, within Psest_2861at 3051.973 kb on + strand, within Psest_2861at 3051.973 kb on + strand, within Psest_2861at 3051.973 kb on + strand, within Psest_2861at 3051.974 kb on - strand, within Psest_2861at 3051.974 kb on - strand, within Psest_2861at 3051.974 kb on - strand, within Psest_2861at 3052.089 kb on + strand, within Psest_2861at 3052.090 kb on - strand, within Psest_2861at 3052.090 kb on - strand, within Psest_2861at 3052.090 kb on - strand, within Psest_2861at 3052.090 kb on - strand, within Psest_2861at 3052.108 kb on + strand, within Psest_2861at 3052.182 kb on + strandat 3052.182 kb on + strandat 3052.183 kb on - strandat 3052.183 kb on - strandat 3052.183 kb on - strandat 3052.183 kb on - strandat 3052.268 kb on - strandat 3052.268 kb on - strandat 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.486 kb on + strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.487 kb on - strand, within Psest_2862at 3052.576 kb on + strand, within Psest_2862at 3052.618 kb on + strand, within Psest_2862at 3052.618 kb on + strand, within Psest_2862at 3052.619 kb on - strand, within Psest_2862at 3052.675 kb on - strand, within Psest_2862at 3052.675 kb on - strand, within Psest_2862at 3052.681 kb on + strand, within Psest_2862at 3052.681 kb on + strand, within Psest_2862at 3052.682 kb on - strand, within Psest_2862at 3052.682 kb on - strand, within Psest_2862at 3052.682 kb on - strand, within Psest_2862at 3052.826 kb on - strand, within Psest_2862at 3052.835 kb on - strand, within Psest_2862at 3052.835 kb on - strand, within Psest_2862at 3052.835 kb on - strand, within Psest_2862at 3052.850 kb on + strand, within Psest_2862at 3052.851 kb on - strand, within Psest_2862at 3052.855 kb on + strand, within Psest_2862at 3052.856 kb on - strand, within Psest_2862at 3053.049 kb on + strandat 3053.065 kb on - strandat 3053.065 kb on - strandat 3053.121 kb on + strandat 3053.435 kb on + strand, within Psest_2863at 3053.435 kb on + strand, within Psest_2863at 3053.435 kb on + strand, within Psest_2863at 3053.435 kb on + strand, within Psest_2863at 3053.436 kb on - strand, within Psest_2863at 3053.622 kb on + strand, within Psest_2863at 3053.795 kb on - strand, within Psest_2863at 3053.795 kb on - strand, within Psest_2863at 3053.930 kb on + strand, within Psest_2863at 3053.930 kb on + strand, within Psest_2863at 3053.930 kb on + strand, within Psest_2863at 3053.931 kb on - strand, within Psest_2863at 3053.931 kb on - strand, within Psest_2863at 3053.931 kb on - strand, within Psest_2863at 3053.931 kb on - strand, within Psest_2863at 3053.955 kb on - strand, within Psest_2863

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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3,051,266 + Psest_2860 0.12 -2.0
3,051,285 + Psest_2860 0.16 -0.6
3,051,285 + Psest_2860 0.16 +2.2
3,051,548 + Psest_2860 0.69 +0.1
3,051,549 - Psest_2860 0.69 -1.0
3,051,549 - Psest_2860 0.69 -2.0
3,051,549 - Psest_2860 0.69 -3.3
3,051,549 - Psest_2860 0.69 +0.6
3,051,614 + Psest_2860 0.82 +0.6
3,051,615 - Psest_2860 0.82 -1.5
3,051,629 + Psest_2860 0.85 -0.1
3,051,629 + Psest_2860 0.85 -2.3
3,051,630 - Psest_2860 0.85 -0.2
3,051,692 + -0.6
3,051,692 + +0.7
3,051,731 + +0.5
3,051,732 - -1.6
3,051,780 + Psest_2861 0.15 -0.2
3,051,780 + Psest_2861 0.15 -3.7
3,051,781 - Psest_2861 0.16 -0.1
3,051,814 + Psest_2861 0.22 -0.3
3,051,814 + Psest_2861 0.22 -0.4
3,051,840 + Psest_2861 0.28 +0.9
3,051,840 + Psest_2861 0.28 -1.4
3,051,840 + Psest_2861 0.28 +0.7
3,051,840 + Psest_2861 0.28 +0.6
3,051,840 + Psest_2861 0.28 +0.4
3,051,841 - Psest_2861 0.28 -1.0
3,051,841 - Psest_2861 0.28 -0.6
3,051,861 + Psest_2861 0.32 +0.4
3,051,861 + Psest_2861 0.32 -0.1
3,051,862 - Psest_2861 0.32 -0.3
3,051,862 - Psest_2861 0.32 -0.0
3,051,973 + Psest_2861 0.55 +1.4
3,051,973 + Psest_2861 0.55 -0.1
3,051,973 + Psest_2861 0.55 +1.3
3,051,973 + Psest_2861 0.55 -0.8
3,051,973 + Psest_2861 0.55 +0.7
3,051,974 - Psest_2861 0.55 -1.1
3,051,974 - Psest_2861 0.55 -0.7
3,051,974 - Psest_2861 0.55 +0.5
3,052,089 + Psest_2861 0.79 -0.6
3,052,090 - Psest_2861 0.79 -1.8
3,052,090 - Psest_2861 0.79 -1.1
3,052,090 - Psest_2861 0.79 +0.5
3,052,090 - Psest_2861 0.79 +0.6
3,052,108 + Psest_2861 0.83 -0.2
3,052,182 + -0.7
3,052,182 + +0.7
3,052,183 - -0.8
3,052,183 - -0.2
3,052,183 - +0.2
3,052,183 - +1.0
3,052,268 - +1.6
3,052,268 - +2.7
3,052,486 + Psest_2862 0.32 +3.3
3,052,486 + Psest_2862 0.32 +3.1
3,052,486 + Psest_2862 0.32 +1.4
3,052,486 + Psest_2862 0.32 +5.0
3,052,486 + Psest_2862 0.32 +3.6
3,052,486 + Psest_2862 0.32 +1.5
3,052,486 + Psest_2862 0.32 +4.0
3,052,486 + Psest_2862 0.32 +2.7
3,052,486 + Psest_2862 0.32 +4.2
3,052,486 + Psest_2862 0.32 +4.0
3,052,487 - Psest_2862 0.32 +1.9
3,052,487 - Psest_2862 0.32 +4.6
3,052,487 - Psest_2862 0.32 +1.4
3,052,487 - Psest_2862 0.32 +4.0
3,052,487 - Psest_2862 0.32 +3.0
3,052,487 - Psest_2862 0.32 +3.4
3,052,487 - Psest_2862 0.32 +4.4
3,052,487 - Psest_2862 0.32 +1.8
3,052,487 - Psest_2862 0.32 +3.5
3,052,487 - Psest_2862 0.32 +1.4
3,052,576 + Psest_2862 0.44 +3.8
3,052,618 + Psest_2862 0.49 +1.6
3,052,618 + Psest_2862 0.49 +1.4
3,052,619 - Psest_2862 0.49 -1.0
3,052,675 - Psest_2862 0.56 +1.2
3,052,675 - Psest_2862 0.56 +2.0
3,052,681 + Psest_2862 0.57 +3.5
3,052,681 + Psest_2862 0.57 +5.3
3,052,682 - Psest_2862 0.57 +3.4
3,052,682 - Psest_2862 0.57 +3.0
3,052,682 - Psest_2862 0.57 +6.1
3,052,826 - Psest_2862 0.76 +1.7
3,052,835 - Psest_2862 0.77 +1.5
3,052,835 - Psest_2862 0.77 +0.0
3,052,835 - Psest_2862 0.77 +3.2
3,052,850 + Psest_2862 0.79 +3.9
3,052,851 - Psest_2862 0.79 +4.4
3,052,855 + Psest_2862 0.80 +2.1
3,052,856 - Psest_2862 0.80 +0.0
3,053,049 + +0.5
3,053,065 - +1.7
3,053,065 - -1.2
3,053,121 + +3.3
3,053,435 + Psest_2863 0.33 +5.1
3,053,435 + Psest_2863 0.33 +2.7
3,053,435 + Psest_2863 0.33 +3.8
3,053,435 + Psest_2863 0.33 +1.8
3,053,436 - Psest_2863 0.33 -0.4
3,053,622 + Psest_2863 0.54 +2.5
3,053,795 - Psest_2863 0.72 +0.7
3,053,795 - Psest_2863 0.72 +0.9
3,053,930 + Psest_2863 0.87 +1.4
3,053,930 + Psest_2863 0.87 +1.8
3,053,930 + Psest_2863 0.87 +3.2
3,053,931 - Psest_2863 0.87 -2.1
3,053,931 - Psest_2863 0.87 +1.4
3,053,931 - Psest_2863 0.87 +2.2
3,053,931 - Psest_2863 0.87 +1.1
3,053,955 - Psest_2863 0.89 +3.7

Or see this region's nucleotide sequence