Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2324

Experiment: Bacitracin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2322 and Psest_2323 are separated by 171 nucleotidesPsest_2323 and Psest_2324 are separated by 5 nucleotidesPsest_2324 and Psest_2325 are separated by 3 nucleotides Psest_2322: Psest_2322 - Transcriptional regulators, at 2,476,141 to 2,476,866 _2322 Psest_2323: Psest_2323 - Uncharacterized protein conserved in archaea, at 2,477,038 to 2,477,670 _2323 Psest_2324: Psest_2324 - hypothetical protein, at 2,477,676 to 2,479,202 _2324 Psest_2325: Psest_2325 - alpha-L-glutamate ligase-related protein, at 2,479,206 to 2,480,189 _2325 Position (kb) 2477 2478 2479 2480Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 2476.715 kb on + strand, within Psest_2322at 2476.715 kb on + strand, within Psest_2322at 2476.716 kb on - strand, within Psest_2322at 2476.716 kb on - strand, within Psest_2322at 2476.911 kb on + strandat 2476.911 kb on + strandat 2476.958 kb on - strandat 2476.981 kb on - strandat 2477.042 kb on + strandat 2477.042 kb on + strandat 2477.043 kb on - strandat 2477.043 kb on - strandat 2477.043 kb on - strandat 2477.043 kb on - strandat 2477.142 kb on + strand, within Psest_2323at 2477.142 kb on + strand, within Psest_2323at 2477.142 kb on + strand, within Psest_2323at 2477.143 kb on - strand, within Psest_2323at 2477.169 kb on - strand, within Psest_2323at 2477.169 kb on - strand, within Psest_2323at 2477.169 kb on - strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.212 kb on + strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.213 kb on - strand, within Psest_2323at 2477.298 kb on + strand, within Psest_2323at 2477.298 kb on + strand, within Psest_2323at 2477.298 kb on + strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.299 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.354 kb on - strand, within Psest_2323at 2477.461 kb on + strand, within Psest_2323at 2477.461 kb on + strand, within Psest_2323at 2477.461 kb on + strand, within Psest_2323at 2477.461 kb on + strand, within Psest_2323at 2477.462 kb on - strand, within Psest_2323at 2477.462 kb on - strand, within Psest_2323at 2477.462 kb on - strand, within Psest_2323at 2477.508 kb on + strand, within Psest_2323at 2477.508 kb on + strand, within Psest_2323at 2477.509 kb on - strand, within Psest_2323at 2477.622 kb on + strandat 2477.668 kb on + strandat 2477.668 kb on + strandat 2477.669 kb on - strandat 2477.669 kb on - strandat 2477.669 kb on - strandat 2477.669 kb on - strandat 2477.672 kb on - strandat 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.865 kb on + strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.866 kb on - strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.925 kb on + strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2477.926 kb on - strand, within Psest_2324at 2478.006 kb on + strand, within Psest_2324at 2478.006 kb on + strand, within Psest_2324at 2478.006 kb on + strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.007 kb on - strand, within Psest_2324at 2478.220 kb on + strand, within Psest_2324at 2478.220 kb on + strand, within Psest_2324at 2478.305 kb on - strand, within Psest_2324at 2478.305 kb on - strand, within Psest_2324at 2478.577 kb on - strand, within Psest_2324at 2478.585 kb on + strand, within Psest_2324at 2478.615 kb on + strand, within Psest_2324at 2478.615 kb on + strand, within Psest_2324at 2478.646 kb on + strand, within Psest_2324at 2478.653 kb on - strand, within Psest_2324at 2478.801 kb on + strand, within Psest_2324at 2478.802 kb on - strand, within Psest_2324at 2478.802 kb on - strand, within Psest_2324at 2478.802 kb on - strand, within Psest_2324at 2478.896 kb on + strand, within Psest_2324at 2478.897 kb on - strand, within Psest_2324at 2479.080 kb on + strandat 2479.080 kb on + strandat 2479.080 kb on + strandat 2479.081 kb on - strandat 2479.081 kb on - strandat 2479.081 kb on - strandat 2479.081 kb on - strandat 2479.147 kb on - strandat 2479.281 kb on + strandat 2479.281 kb on + strandat 2479.281 kb on + strandat 2479.281 kb on + strandat 2479.282 kb on - strandat 2479.282 kb on - strandat 2479.282 kb on - strandat 2479.282 kb on - strandat 2479.282 kb on - strandat 2479.293 kb on + strandat 2479.294 kb on - strandat 2479.383 kb on + strand, within Psest_2325at 2479.383 kb on + strand, within Psest_2325at 2479.384 kb on - strand, within Psest_2325at 2479.384 kb on - strand, within Psest_2325at 2479.384 kb on - strand, within Psest_2325at 2479.521 kb on + strand, within Psest_2325at 2479.522 kb on - strand, within Psest_2325at 2479.597 kb on - strand, within Psest_2325at 2479.597 kb on - strand, within Psest_2325at 2479.674 kb on + strand, within Psest_2325at 2479.674 kb on + strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.675 kb on - strand, within Psest_2325at 2479.769 kb on + strand, within Psest_2325at 2479.938 kb on + strand, within Psest_2325at 2479.938 kb on + strand, within Psest_2325at 2479.939 kb on - strand, within Psest_2325at 2479.959 kb on + strand, within Psest_2325at 2479.959 kb on + strand, within Psest_2325at 2479.959 kb on + strand, within Psest_2325at 2479.960 kb on - strand, within Psest_2325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
remove
2,476,715 + Psest_2322 0.79 +1.4
2,476,715 + Psest_2322 0.79 +0.6
2,476,716 - Psest_2322 0.79 +1.4
2,476,716 - Psest_2322 0.79 +0.1
2,476,911 + -0.2
2,476,911 + -0.0
2,476,958 - -0.7
2,476,981 - -0.7
2,477,042 + -0.9
2,477,042 + -1.2
2,477,043 - +2.8
2,477,043 - +4.6
2,477,043 - +4.0
2,477,043 - +3.3
2,477,142 + Psest_2323 0.16 +3.1
2,477,142 + Psest_2323 0.16 +2.4
2,477,142 + Psest_2323 0.16 +3.7
2,477,143 - Psest_2323 0.17 +5.3
2,477,169 - Psest_2323 0.21 +3.3
2,477,169 - Psest_2323 0.21 +3.2
2,477,169 - Psest_2323 0.21 +2.8
2,477,212 + Psest_2323 0.27 +4.6
2,477,212 + Psest_2323 0.27 +2.6
2,477,212 + Psest_2323 0.27 +3.7
2,477,212 + Psest_2323 0.27 +3.7
2,477,212 + Psest_2323 0.27 +2.4
2,477,213 - Psest_2323 0.28 +3.7
2,477,213 - Psest_2323 0.28 +3.0
2,477,213 - Psest_2323 0.28 +3.0
2,477,213 - Psest_2323 0.28 +2.7
2,477,213 - Psest_2323 0.28 +2.6
2,477,298 + Psest_2323 0.41 +3.0
2,477,298 + Psest_2323 0.41 +2.7
2,477,298 + Psest_2323 0.41 +4.0
2,477,299 - Psest_2323 0.41 +0.6
2,477,299 - Psest_2323 0.41 +3.2
2,477,299 - Psest_2323 0.41 +3.3
2,477,299 - Psest_2323 0.41 +3.4
2,477,299 - Psest_2323 0.41 +4.0
2,477,299 - Psest_2323 0.41 +2.7
2,477,299 - Psest_2323 0.41 +1.7
2,477,299 - Psest_2323 0.41 +2.3
2,477,299 - Psest_2323 0.41 +3.5
2,477,299 - Psest_2323 0.41 +2.9
2,477,354 - Psest_2323 0.50 +3.6
2,477,354 - Psest_2323 0.50 +3.3
2,477,354 - Psest_2323 0.50 +3.1
2,477,354 - Psest_2323 0.50 +3.5
2,477,354 - Psest_2323 0.50 +3.4
2,477,354 - Psest_2323 0.50 +2.9
2,477,461 + Psest_2323 0.67 +3.5
2,477,461 + Psest_2323 0.67 +3.7
2,477,461 + Psest_2323 0.67 +4.9
2,477,461 + Psest_2323 0.67 +3.7
2,477,462 - Psest_2323 0.67 +2.6
2,477,462 - Psest_2323 0.67 +0.8
2,477,462 - Psest_2323 0.67 +4.3
2,477,508 + Psest_2323 0.74 +2.1
2,477,508 + Psest_2323 0.74 +3.7
2,477,509 - Psest_2323 0.74 +2.5
2,477,622 + +4.7
2,477,668 + +3.2
2,477,668 + +1.4
2,477,669 - +3.1
2,477,669 - +3.0
2,477,669 - +2.4
2,477,669 - +4.0
2,477,672 - +3.5
2,477,865 + Psest_2324 0.12 +3.6
2,477,865 + Psest_2324 0.12 +3.6
2,477,865 + Psest_2324 0.12 +3.8
2,477,865 + Psest_2324 0.12 +2.6
2,477,865 + Psest_2324 0.12 +1.0
2,477,865 + Psest_2324 0.12 +2.4
2,477,865 + Psest_2324 0.12 +2.2
2,477,865 + Psest_2324 0.12 +1.9
2,477,866 - Psest_2324 0.12 +2.4
2,477,866 - Psest_2324 0.12 +1.9
2,477,866 - Psest_2324 0.12 +2.0
2,477,866 - Psest_2324 0.12 +1.8
2,477,866 - Psest_2324 0.12 +2.2
2,477,866 - Psest_2324 0.12 +2.0
2,477,866 - Psest_2324 0.12 +3.3
2,477,866 - Psest_2324 0.12 +2.5
2,477,866 - Psest_2324 0.12 +2.7
2,477,866 - Psest_2324 0.12 +1.6
2,477,866 - Psest_2324 0.12 +2.9
2,477,866 - Psest_2324 0.12 +3.8
2,477,925 + Psest_2324 0.16 +2.6
2,477,925 + Psest_2324 0.16 +2.4
2,477,925 + Psest_2324 0.16 +1.2
2,477,925 + Psest_2324 0.16 +0.7
2,477,925 + Psest_2324 0.16 +2.6
2,477,925 + Psest_2324 0.16 +2.7
2,477,925 + Psest_2324 0.16 +3.9
2,477,925 + Psest_2324 0.16 +3.2
2,477,925 + Psest_2324 0.16 +2.7
2,477,925 + Psest_2324 0.16 +2.1
2,477,925 + Psest_2324 0.16 +2.5
2,477,925 + Psest_2324 0.16 +2.2
2,477,925 + Psest_2324 0.16 +2.3
2,477,926 - Psest_2324 0.16 +0.9
2,477,926 - Psest_2324 0.16 +2.6
2,477,926 - Psest_2324 0.16 +3.3
2,477,926 - Psest_2324 0.16 +3.3
2,477,926 - Psest_2324 0.16 +2.9
2,477,926 - Psest_2324 0.16 +3.9
2,477,926 - Psest_2324 0.16 +2.6
2,477,926 - Psest_2324 0.16 +3.0
2,477,926 - Psest_2324 0.16 +3.1
2,477,926 - Psest_2324 0.16 +3.6
2,478,006 + Psest_2324 0.22 +1.9
2,478,006 + Psest_2324 0.22 +2.4
2,478,006 + Psest_2324 0.22 +1.3
2,478,007 - Psest_2324 0.22 +2.3
2,478,007 - Psest_2324 0.22 +3.3
2,478,007 - Psest_2324 0.22 +0.9
2,478,007 - Psest_2324 0.22 +1.9
2,478,007 - Psest_2324 0.22 +1.1
2,478,007 - Psest_2324 0.22 +1.5
2,478,007 - Psest_2324 0.22 +2.9
2,478,220 + Psest_2324 0.36 +2.6
2,478,220 + Psest_2324 0.36 +3.0
2,478,305 - Psest_2324 0.41 +2.5
2,478,305 - Psest_2324 0.41 +2.3
2,478,577 - Psest_2324 0.59 +1.6
2,478,585 + Psest_2324 0.60 +2.3
2,478,615 + Psest_2324 0.61 +1.8
2,478,615 + Psest_2324 0.61 +2.6
2,478,646 + Psest_2324 0.64 +2.6
2,478,653 - Psest_2324 0.64 +1.7
2,478,801 + Psest_2324 0.74 +2.2
2,478,802 - Psest_2324 0.74 +2.7
2,478,802 - Psest_2324 0.74 +2.1
2,478,802 - Psest_2324 0.74 +2.2
2,478,896 + Psest_2324 0.80 +3.2
2,478,897 - Psest_2324 0.80 +1.6
2,479,080 + +3.2
2,479,080 + +0.4
2,479,080 + +2.9
2,479,081 - -1.0
2,479,081 - +0.8
2,479,081 - +0.4
2,479,081 - +4.3
2,479,147 - +3.1
2,479,281 + +2.9
2,479,281 + +1.8
2,479,281 + +2.8
2,479,281 + +1.6
2,479,282 - +3.1
2,479,282 - +1.8
2,479,282 - +2.8
2,479,282 - +1.9
2,479,282 - +2.7
2,479,293 + +3.1
2,479,294 - +1.5
2,479,383 + Psest_2325 0.18 +2.1
2,479,383 + Psest_2325 0.18 +2.0
2,479,384 - Psest_2325 0.18 +0.3
2,479,384 - Psest_2325 0.18 +2.4
2,479,384 - Psest_2325 0.18 +2.7
2,479,521 + Psest_2325 0.32 +1.3
2,479,522 - Psest_2325 0.32 +1.9
2,479,597 - Psest_2325 0.40 +3.3
2,479,597 - Psest_2325 0.40 +2.2
2,479,674 + Psest_2325 0.48 +3.3
2,479,674 + Psest_2325 0.48 +3.0
2,479,675 - Psest_2325 0.48 +2.4
2,479,675 - Psest_2325 0.48 +1.4
2,479,675 - Psest_2325 0.48 +3.5
2,479,675 - Psest_2325 0.48 +3.3
2,479,675 - Psest_2325 0.48 +3.7
2,479,769 + Psest_2325 0.57 +2.3
2,479,938 + Psest_2325 0.74 +2.6
2,479,938 + Psest_2325 0.74 +3.3
2,479,939 - Psest_2325 0.74 +3.1
2,479,959 + Psest_2325 0.77 +2.3
2,479,959 + Psest_2325 0.77 +0.8
2,479,959 + Psest_2325 0.77 +2.2
2,479,960 - Psest_2325 0.77 +3.2

Or see this region's nucleotide sequence