Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2140

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2139 and Psest_2140 are separated by 28 nucleotidesPsest_2140 and Psest_2141 overlap by 4 nucleotides Psest_2139: Psest_2139 - Cation/multidrug efflux pump, at 2,276,735 to 2,279,815 _2139 Psest_2140: Psest_2140 - Cation/multidrug efflux pump, at 2,279,844 to 2,282,948 _2140 Psest_2141: Psest_2141 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,282,945 to 2,284,432 _2141 Position (kb) 2279 2280 2281 2282 2283Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2278.844 kb on + strand, within Psest_2139at 2278.845 kb on - strand, within Psest_2139at 2278.845 kb on - strand, within Psest_2139at 2278.914 kb on - strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.321 kb on + strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.322 kb on - strand, within Psest_2139at 2279.342 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.351 kb on + strand, within Psest_2139at 2279.352 kb on - strand, within Psest_2139at 2279.352 kb on - strand, within Psest_2139at 2279.352 kb on - strand, within Psest_2139at 2279.744 kb on + strandat 2279.865 kb on - strandat 2280.228 kb on + strand, within Psest_2140at 2280.306 kb on + strand, within Psest_2140at 2280.432 kb on + strand, within Psest_2140at 2280.564 kb on + strand, within Psest_2140at 2280.565 kb on - strand, within Psest_2140at 2280.868 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.975 kb on + strand, within Psest_2140at 2280.976 kb on - strand, within Psest_2140at 2280.976 kb on - strand, within Psest_2140at 2280.976 kb on - strand, within Psest_2140at 2280.976 kb on - strand, within Psest_2140at 2280.976 kb on - strand, within Psest_2140at 2280.976 kb on - strand, within Psest_2140at 2280.976 kb on - strand, within Psest_2140at 2281.117 kb on - strand, within Psest_2140at 2281.194 kb on + strand, within Psest_2140at 2281.194 kb on + strand, within Psest_2140at 2281.194 kb on + strand, within Psest_2140at 2281.195 kb on - strand, within Psest_2140at 2281.195 kb on - strand, within Psest_2140at 2281.195 kb on - strand, within Psest_2140at 2281.195 kb on - strand, within Psest_2140at 2281.195 kb on - strand, within Psest_2140at 2281.195 kb on - strand, within Psest_2140at 2281.389 kb on + strand, within Psest_2140at 2281.390 kb on - strand, within Psest_2140at 2281.390 kb on - strand, within Psest_2140at 2281.476 kb on + strand, within Psest_2140at 2281.476 kb on + strand, within Psest_2140at 2281.476 kb on + strand, within Psest_2140at 2281.477 kb on - strand, within Psest_2140at 2281.833 kb on + strand, within Psest_2140at 2281.833 kb on + strand, within Psest_2140at 2281.834 kb on - strand, within Psest_2140at 2281.834 kb on - strand, within Psest_2140at 2281.834 kb on - strand, within Psest_2140at 2281.839 kb on + strand, within Psest_2140at 2281.839 kb on + strand, within Psest_2140at 2281.841 kb on + strand, within Psest_2140at 2281.841 kb on + strand, within Psest_2140at 2281.841 kb on + strand, within Psest_2140at 2281.841 kb on + strand, within Psest_2140at 2281.842 kb on - strand, within Psest_2140at 2281.842 kb on - strand, within Psest_2140at 2281.842 kb on - strand, within Psest_2140at 2281.874 kb on + strand, within Psest_2140at 2281.875 kb on - strand, within Psest_2140at 2282.071 kb on - strand, within Psest_2140at 2282.071 kb on - strand, within Psest_2140at 2282.119 kb on - strand, within Psest_2140at 2282.442 kb on + strand, within Psest_2140at 2282.442 kb on + strand, within Psest_2140at 2282.443 kb on - strand, within Psest_2140at 2282.443 kb on - strand, within Psest_2140at 2282.443 kb on - strand, within Psest_2140at 2282.443 kb on - strand, within Psest_2140at 2282.443 kb on - strand, within Psest_2140at 2282.472 kb on + strand, within Psest_2140at 2282.472 kb on + strand, within Psest_2140at 2282.472 kb on + strand, within Psest_2140at 2282.472 kb on + strand, within Psest_2140at 2282.847 kb on + strandat 2282.847 kb on + strandat 2282.865 kb on + strandat 2282.865 kb on + strandat 2282.865 kb on + strandat 2282.865 kb on + strandat 2282.865 kb on + strandat 2282.865 kb on + strandat 2282.866 kb on - strandat 2282.866 kb on - strandat 2283.051 kb on - strandat 2283.349 kb on + strand, within Psest_2141at 2283.352 kb on + strand, within Psest_2141at 2283.352 kb on + strand, within Psest_2141at 2283.353 kb on - strand, within Psest_2141at 2283.381 kb on - strand, within Psest_2141at 2283.461 kb on - strand, within Psest_2141at 2283.527 kb on + strand, within Psest_2141at 2283.528 kb on - strand, within Psest_2141at 2283.528 kb on - strand, within Psest_2141at 2283.587 kb on + strand, within Psest_2141

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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2,278,844 + Psest_2139 0.68 -2.3
2,278,845 - Psest_2139 0.68 -1.9
2,278,845 - Psest_2139 0.68 -2.2
2,278,914 - Psest_2139 0.71 -4.3
2,279,321 + Psest_2139 0.84 -1.8
2,279,321 + Psest_2139 0.84 -2.3
2,279,321 + Psest_2139 0.84 -3.6
2,279,321 + Psest_2139 0.84 -2.4
2,279,321 + Psest_2139 0.84 -3.1
2,279,321 + Psest_2139 0.84 -1.4
2,279,321 + Psest_2139 0.84 -3.9
2,279,321 + Psest_2139 0.84 -2.7
2,279,321 + Psest_2139 0.84 -3.9
2,279,321 + Psest_2139 0.84 -0.2
2,279,321 + Psest_2139 0.84 -1.9
2,279,321 + Psest_2139 0.84 -3.1
2,279,322 - Psest_2139 0.84 -3.7
2,279,322 - Psest_2139 0.84 -2.2
2,279,322 - Psest_2139 0.84 -1.7
2,279,322 - Psest_2139 0.84 -2.7
2,279,322 - Psest_2139 0.84 -0.6
2,279,322 - Psest_2139 0.84 -4.0
2,279,342 + Psest_2139 0.85 -3.9
2,279,351 + Psest_2139 0.85 -2.3
2,279,351 + Psest_2139 0.85 -2.6
2,279,351 + Psest_2139 0.85 -2.1
2,279,351 + Psest_2139 0.85 -4.0
2,279,351 + Psest_2139 0.85 -1.6
2,279,351 + Psest_2139 0.85 -2.6
2,279,351 + Psest_2139 0.85 -3.6
2,279,351 + Psest_2139 0.85 -3.6
2,279,352 - Psest_2139 0.85 -2.6
2,279,352 - Psest_2139 0.85 -1.5
2,279,352 - Psest_2139 0.85 -3.3
2,279,744 + -1.6
2,279,865 - -2.5
2,280,228 + Psest_2140 0.12 -2.7
2,280,306 + Psest_2140 0.15 -3.4
2,280,432 + Psest_2140 0.19 -3.1
2,280,564 + Psest_2140 0.23 -0.9
2,280,565 - Psest_2140 0.23 -3.0
2,280,868 + Psest_2140 0.33 -0.8
2,280,975 + Psest_2140 0.36 -2.4
2,280,975 + Psest_2140 0.36 -4.2
2,280,975 + Psest_2140 0.36 -3.8
2,280,975 + Psest_2140 0.36 -2.8
2,280,975 + Psest_2140 0.36 -4.5
2,280,975 + Psest_2140 0.36 -2.6
2,280,975 + Psest_2140 0.36 -1.5
2,280,975 + Psest_2140 0.36 -4.9
2,280,975 + Psest_2140 0.36 +0.4
2,280,975 + Psest_2140 0.36 -1.6
2,280,975 + Psest_2140 0.36 -3.1
2,280,975 + Psest_2140 0.36 -0.9
2,280,976 - Psest_2140 0.36 -2.6
2,280,976 - Psest_2140 0.36 -1.2
2,280,976 - Psest_2140 0.36 -3.8
2,280,976 - Psest_2140 0.36 -1.9
2,280,976 - Psest_2140 0.36 -0.4
2,280,976 - Psest_2140 0.36 -4.6
2,280,976 - Psest_2140 0.36 -1.4
2,281,117 - Psest_2140 0.41 -2.5
2,281,194 + Psest_2140 0.43 -2.6
2,281,194 + Psest_2140 0.43 -1.6
2,281,194 + Psest_2140 0.43 -1.5
2,281,195 - Psest_2140 0.44 -0.9
2,281,195 - Psest_2140 0.44 -3.2
2,281,195 - Psest_2140 0.44 -3.1
2,281,195 - Psest_2140 0.44 -2.1
2,281,195 - Psest_2140 0.44 -3.8
2,281,195 - Psest_2140 0.44 -2.1
2,281,389 + Psest_2140 0.50 -0.9
2,281,390 - Psest_2140 0.50 -0.9
2,281,390 - Psest_2140 0.50 -2.8
2,281,476 + Psest_2140 0.53 -4.5
2,281,476 + Psest_2140 0.53 -2.1
2,281,476 + Psest_2140 0.53 -2.5
2,281,477 - Psest_2140 0.53 -1.4
2,281,833 + Psest_2140 0.64 -2.9
2,281,833 + Psest_2140 0.64 -0.8
2,281,834 - Psest_2140 0.64 -2.2
2,281,834 - Psest_2140 0.64 -0.2
2,281,834 - Psest_2140 0.64 -2.6
2,281,839 + Psest_2140 0.64 -3.5
2,281,839 + Psest_2140 0.64 -2.5
2,281,841 + Psest_2140 0.64 -3.0
2,281,841 + Psest_2140 0.64 -3.5
2,281,841 + Psest_2140 0.64 -4.8
2,281,841 + Psest_2140 0.64 -3.5
2,281,842 - Psest_2140 0.64 -2.2
2,281,842 - Psest_2140 0.64 -3.6
2,281,842 - Psest_2140 0.64 -1.4
2,281,874 + Psest_2140 0.65 -1.4
2,281,875 - Psest_2140 0.65 -1.8
2,282,071 - Psest_2140 0.72 -3.3
2,282,071 - Psest_2140 0.72 -0.4
2,282,119 - Psest_2140 0.73 -2.1
2,282,442 + Psest_2140 0.84 -1.4
2,282,442 + Psest_2140 0.84 -3.2
2,282,443 - Psest_2140 0.84 -2.3
2,282,443 - Psest_2140 0.84 -4.6
2,282,443 - Psest_2140 0.84 -4.5
2,282,443 - Psest_2140 0.84 -2.2
2,282,443 - Psest_2140 0.84 -3.2
2,282,472 + Psest_2140 0.85 -3.1
2,282,472 + Psest_2140 0.85 -3.5
2,282,472 + Psest_2140 0.85 -2.7
2,282,472 + Psest_2140 0.85 -3.4
2,282,847 + -2.5
2,282,847 + -2.2
2,282,865 + -3.5
2,282,865 + -1.9
2,282,865 + -3.8
2,282,865 + -3.2
2,282,865 + -1.3
2,282,865 + -2.8
2,282,866 - -4.2
2,282,866 - -2.5
2,283,051 - -2.8
2,283,349 + Psest_2141 0.27 -3.2
2,283,352 + Psest_2141 0.27 -0.9
2,283,352 + Psest_2141 0.27 -3.0
2,283,353 - Psest_2141 0.27 -2.9
2,283,381 - Psest_2141 0.29 -3.7
2,283,461 - Psest_2141 0.35 -0.8
2,283,527 + Psest_2141 0.39 -3.4
2,283,528 - Psest_2141 0.39 -3.6
2,283,528 - Psest_2141 0.39 -1.2
2,283,587 + Psest_2141 0.43 -3.8

Or see this region's nucleotide sequence