Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2139 and Psest_2140 are separated by 28 nucleotides Psest_2140 and Psest_2141 overlap by 4 nucleotides
Psest_2139: Psest_2139 - Cation/multidrug efflux pump, at 2,276,735 to 2,279,815
_2139
Psest_2140: Psest_2140 - Cation/multidrug efflux pump, at 2,279,844 to 2,282,948
_2140
Psest_2141: Psest_2141 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 2,282,945 to 2,284,432
_2141
Position (kb)
2279
2280
2281
2282
2283 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2278.844 kb on + strand, within Psest_2139 at 2278.845 kb on - strand, within Psest_2139 at 2278.845 kb on - strand, within Psest_2139 at 2278.914 kb on - strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.321 kb on + strand, within Psest_2139 at 2279.322 kb on - strand, within Psest_2139 at 2279.322 kb on - strand, within Psest_2139 at 2279.322 kb on - strand, within Psest_2139 at 2279.322 kb on - strand, within Psest_2139 at 2279.322 kb on - strand, within Psest_2139 at 2279.322 kb on - strand, within Psest_2139 at 2279.342 kb on + strand, within Psest_2139 at 2279.351 kb on + strand, within Psest_2139 at 2279.351 kb on + strand, within Psest_2139 at 2279.351 kb on + strand, within Psest_2139 at 2279.351 kb on + strand, within Psest_2139 at 2279.351 kb on + strand, within Psest_2139 at 2279.351 kb on + strand, within Psest_2139 at 2279.351 kb on + strand, within Psest_2139 at 2279.351 kb on + strand, within Psest_2139 at 2279.352 kb on - strand, within Psest_2139 at 2279.352 kb on - strand, within Psest_2139 at 2279.352 kb on - strand, within Psest_2139 at 2279.744 kb on + strand at 2279.865 kb on - strand at 2280.228 kb on + strand, within Psest_2140 at 2280.306 kb on + strand, within Psest_2140 at 2280.432 kb on + strand, within Psest_2140 at 2280.564 kb on + strand, within Psest_2140 at 2280.565 kb on - strand, within Psest_2140 at 2280.868 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.975 kb on + strand, within Psest_2140 at 2280.976 kb on - strand, within Psest_2140 at 2280.976 kb on - strand, within Psest_2140 at 2280.976 kb on - strand, within Psest_2140 at 2280.976 kb on - strand, within Psest_2140 at 2280.976 kb on - strand, within Psest_2140 at 2280.976 kb on - strand, within Psest_2140 at 2280.976 kb on - strand, within Psest_2140 at 2281.117 kb on - strand, within Psest_2140 at 2281.194 kb on + strand, within Psest_2140 at 2281.194 kb on + strand, within Psest_2140 at 2281.194 kb on + strand, within Psest_2140 at 2281.195 kb on - strand, within Psest_2140 at 2281.195 kb on - strand, within Psest_2140 at 2281.195 kb on - strand, within Psest_2140 at 2281.195 kb on - strand, within Psest_2140 at 2281.195 kb on - strand, within Psest_2140 at 2281.195 kb on - strand, within Psest_2140 at 2281.389 kb on + strand, within Psest_2140 at 2281.390 kb on - strand, within Psest_2140 at 2281.390 kb on - strand, within Psest_2140 at 2281.476 kb on + strand, within Psest_2140 at 2281.476 kb on + strand, within Psest_2140 at 2281.476 kb on + strand, within Psest_2140 at 2281.477 kb on - strand, within Psest_2140 at 2281.833 kb on + strand, within Psest_2140 at 2281.833 kb on + strand, within Psest_2140 at 2281.834 kb on - strand, within Psest_2140 at 2281.834 kb on - strand, within Psest_2140 at 2281.834 kb on - strand, within Psest_2140 at 2281.839 kb on + strand, within Psest_2140 at 2281.839 kb on + strand, within Psest_2140 at 2281.841 kb on + strand, within Psest_2140 at 2281.841 kb on + strand, within Psest_2140 at 2281.841 kb on + strand, within Psest_2140 at 2281.841 kb on + strand, within Psest_2140 at 2281.842 kb on - strand, within Psest_2140 at 2281.842 kb on - strand, within Psest_2140 at 2281.842 kb on - strand, within Psest_2140 at 2281.874 kb on + strand, within Psest_2140 at 2281.875 kb on - strand, within Psest_2140 at 2282.071 kb on - strand, within Psest_2140 at 2282.071 kb on - strand, within Psest_2140 at 2282.119 kb on - strand, within Psest_2140 at 2282.442 kb on + strand, within Psest_2140 at 2282.442 kb on + strand, within Psest_2140 at 2282.443 kb on - strand, within Psest_2140 at 2282.443 kb on - strand, within Psest_2140 at 2282.443 kb on - strand, within Psest_2140 at 2282.443 kb on - strand, within Psest_2140 at 2282.443 kb on - strand, within Psest_2140 at 2282.472 kb on + strand, within Psest_2140 at 2282.472 kb on + strand, within Psest_2140 at 2282.472 kb on + strand, within Psest_2140 at 2282.472 kb on + strand, within Psest_2140 at 2282.847 kb on + strand at 2282.847 kb on + strand at 2282.865 kb on + strand at 2282.865 kb on + strand at 2282.865 kb on + strand at 2282.865 kb on + strand at 2282.865 kb on + strand at 2282.865 kb on + strand at 2282.866 kb on - strand at 2282.866 kb on - strand at 2283.051 kb on - strand at 2283.349 kb on + strand, within Psest_2141 at 2283.352 kb on + strand, within Psest_2141 at 2283.352 kb on + strand, within Psest_2141 at 2283.353 kb on - strand, within Psest_2141 at 2283.381 kb on - strand, within Psest_2141 at 2283.461 kb on - strand, within Psest_2141 at 2283.527 kb on + strand, within Psest_2141 at 2283.528 kb on - strand, within Psest_2141 at 2283.528 kb on - strand, within Psest_2141 at 2283.587 kb on + strand, within Psest_2141
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 2,278,844 + Psest_2139 0.68 -2.3 2,278,845 - Psest_2139 0.68 -1.9 2,278,845 - Psest_2139 0.68 -2.2 2,278,914 - Psest_2139 0.71 -4.3 2,279,321 + Psest_2139 0.84 -1.8 2,279,321 + Psest_2139 0.84 -2.3 2,279,321 + Psest_2139 0.84 -3.6 2,279,321 + Psest_2139 0.84 -2.4 2,279,321 + Psest_2139 0.84 -3.1 2,279,321 + Psest_2139 0.84 -1.4 2,279,321 + Psest_2139 0.84 -3.9 2,279,321 + Psest_2139 0.84 -2.7 2,279,321 + Psest_2139 0.84 -3.9 2,279,321 + Psest_2139 0.84 -0.2 2,279,321 + Psest_2139 0.84 -1.9 2,279,321 + Psest_2139 0.84 -3.1 2,279,322 - Psest_2139 0.84 -3.7 2,279,322 - Psest_2139 0.84 -2.2 2,279,322 - Psest_2139 0.84 -1.7 2,279,322 - Psest_2139 0.84 -2.7 2,279,322 - Psest_2139 0.84 -0.6 2,279,322 - Psest_2139 0.84 -4.0 2,279,342 + Psest_2139 0.85 -3.9 2,279,351 + Psest_2139 0.85 -2.3 2,279,351 + Psest_2139 0.85 -2.6 2,279,351 + Psest_2139 0.85 -2.1 2,279,351 + Psest_2139 0.85 -4.0 2,279,351 + Psest_2139 0.85 -1.6 2,279,351 + Psest_2139 0.85 -2.6 2,279,351 + Psest_2139 0.85 -3.6 2,279,351 + Psest_2139 0.85 -3.6 2,279,352 - Psest_2139 0.85 -2.6 2,279,352 - Psest_2139 0.85 -1.5 2,279,352 - Psest_2139 0.85 -3.3 2,279,744 + -1.6 2,279,865 - -2.5 2,280,228 + Psest_2140 0.12 -2.7 2,280,306 + Psest_2140 0.15 -3.4 2,280,432 + Psest_2140 0.19 -3.1 2,280,564 + Psest_2140 0.23 -0.9 2,280,565 - Psest_2140 0.23 -3.0 2,280,868 + Psest_2140 0.33 -0.8 2,280,975 + Psest_2140 0.36 -2.4 2,280,975 + Psest_2140 0.36 -4.2 2,280,975 + Psest_2140 0.36 -3.8 2,280,975 + Psest_2140 0.36 -2.8 2,280,975 + Psest_2140 0.36 -4.5 2,280,975 + Psest_2140 0.36 -2.6 2,280,975 + Psest_2140 0.36 -1.5 2,280,975 + Psest_2140 0.36 -4.9 2,280,975 + Psest_2140 0.36 +0.4 2,280,975 + Psest_2140 0.36 -1.6 2,280,975 + Psest_2140 0.36 -3.1 2,280,975 + Psest_2140 0.36 -0.9 2,280,976 - Psest_2140 0.36 -2.6 2,280,976 - Psest_2140 0.36 -1.2 2,280,976 - Psest_2140 0.36 -3.8 2,280,976 - Psest_2140 0.36 -1.9 2,280,976 - Psest_2140 0.36 -0.4 2,280,976 - Psest_2140 0.36 -4.6 2,280,976 - Psest_2140 0.36 -1.4 2,281,117 - Psest_2140 0.41 -2.5 2,281,194 + Psest_2140 0.43 -2.6 2,281,194 + Psest_2140 0.43 -1.6 2,281,194 + Psest_2140 0.43 -1.5 2,281,195 - Psest_2140 0.44 -0.9 2,281,195 - Psest_2140 0.44 -3.2 2,281,195 - Psest_2140 0.44 -3.1 2,281,195 - Psest_2140 0.44 -2.1 2,281,195 - Psest_2140 0.44 -3.8 2,281,195 - Psest_2140 0.44 -2.1 2,281,389 + Psest_2140 0.50 -0.9 2,281,390 - Psest_2140 0.50 -0.9 2,281,390 - Psest_2140 0.50 -2.8 2,281,476 + Psest_2140 0.53 -4.5 2,281,476 + Psest_2140 0.53 -2.1 2,281,476 + Psest_2140 0.53 -2.5 2,281,477 - Psest_2140 0.53 -1.4 2,281,833 + Psest_2140 0.64 -2.9 2,281,833 + Psest_2140 0.64 -0.8 2,281,834 - Psest_2140 0.64 -2.2 2,281,834 - Psest_2140 0.64 -0.2 2,281,834 - Psest_2140 0.64 -2.6 2,281,839 + Psest_2140 0.64 -3.5 2,281,839 + Psest_2140 0.64 -2.5 2,281,841 + Psest_2140 0.64 -3.0 2,281,841 + Psest_2140 0.64 -3.5 2,281,841 + Psest_2140 0.64 -4.8 2,281,841 + Psest_2140 0.64 -3.5 2,281,842 - Psest_2140 0.64 -2.2 2,281,842 - Psest_2140 0.64 -3.6 2,281,842 - Psest_2140 0.64 -1.4 2,281,874 + Psest_2140 0.65 -1.4 2,281,875 - Psest_2140 0.65 -1.8 2,282,071 - Psest_2140 0.72 -3.3 2,282,071 - Psest_2140 0.72 -0.4 2,282,119 - Psest_2140 0.73 -2.1 2,282,442 + Psest_2140 0.84 -1.4 2,282,442 + Psest_2140 0.84 -3.2 2,282,443 - Psest_2140 0.84 -2.3 2,282,443 - Psest_2140 0.84 -4.6 2,282,443 - Psest_2140 0.84 -4.5 2,282,443 - Psest_2140 0.84 -2.2 2,282,443 - Psest_2140 0.84 -3.2 2,282,472 + Psest_2140 0.85 -3.1 2,282,472 + Psest_2140 0.85 -3.5 2,282,472 + Psest_2140 0.85 -2.7 2,282,472 + Psest_2140 0.85 -3.4 2,282,847 + -2.5 2,282,847 + -2.2 2,282,865 + -3.5 2,282,865 + -1.9 2,282,865 + -3.8 2,282,865 + -3.2 2,282,865 + -1.3 2,282,865 + -2.8 2,282,866 - -4.2 2,282,866 - -2.5 2,283,051 - -2.8 2,283,349 + Psest_2141 0.27 -3.2 2,283,352 + Psest_2141 0.27 -0.9 2,283,352 + Psest_2141 0.27 -3.0 2,283,353 - Psest_2141 0.27 -2.9 2,283,381 - Psest_2141 0.29 -3.7 2,283,461 - Psest_2141 0.35 -0.8 2,283,527 + Psest_2141 0.39 -3.4 2,283,528 - Psest_2141 0.39 -3.6 2,283,528 - Psest_2141 0.39 -1.2 2,283,587 + Psest_2141 0.43 -3.8
Or see this region's nucleotide sequence