Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0197

Experiment: Bacitracin 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0196 and Psest_0197 are separated by 131 nucleotidesPsest_0197 and Psest_0198 are separated by 121 nucleotides Psest_0196: Psest_0196 - Uncharacterized membrane protein, required for spore maturation in B.subtilis., at 191,428 to 192,657 _0196 Psest_0197: Psest_0197 - TRAP transporter, 4TM/12TM fusion protein, at 192,789 to 195,341 _0197 Psest_0198: Psest_0198 - TRAP transporter solute receptor, TAXI family, at 195,463 to 196,428 _0198 Position (kb) 192 193 194 195 196Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 191.865 kb on + strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.866 kb on - strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.905 kb on + strand, within Psest_0196at 191.906 kb on - strand, within Psest_0196at 192.047 kb on - strand, within Psest_0196at 192.047 kb on - strand, within Psest_0196at 192.047 kb on - strand, within Psest_0196at 192.206 kb on + strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.207 kb on - strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.208 kb on + strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.209 kb on - strand, within Psest_0196at 192.268 kb on + strand, within Psest_0196at 192.372 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.529 kb on + strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.530 kb on - strand, within Psest_0196at 192.544 kb on + strandat 192.544 kb on + strandat 192.544 kb on + strandat 192.545 kb on - strandat 192.712 kb on - strandat 192.712 kb on - strandat 192.985 kb on + strandat 192.985 kb on + strandat 192.985 kb on + strandat 192.985 kb on + strandat 193.246 kb on + strand, within Psest_0197at 193.270 kb on + strand, within Psest_0197at 193.270 kb on + strand, within Psest_0197at 193.271 kb on - strand, within Psest_0197at 193.271 kb on - strand, within Psest_0197at 193.271 kb on - strand, within Psest_0197at 193.414 kb on + strand, within Psest_0197at 193.417 kb on + strand, within Psest_0197at 193.418 kb on - strand, within Psest_0197at 193.418 kb on - strand, within Psest_0197at 193.418 kb on - strand, within Psest_0197at 193.522 kb on + strand, within Psest_0197at 193.522 kb on + strand, within Psest_0197at 193.522 kb on + strand, within Psest_0197at 193.523 kb on - strand, within Psest_0197at 193.523 kb on - strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.621 kb on + strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 193.622 kb on - strand, within Psest_0197at 194.215 kb on + strand, within Psest_0197at 194.215 kb on + strand, within Psest_0197at 194.215 kb on + strand, within Psest_0197at 194.216 kb on - strand, within Psest_0197at 194.216 kb on - strand, within Psest_0197at 194.350 kb on + strand, within Psest_0197at 194.350 kb on + strand, within Psest_0197at 194.350 kb on + strand, within Psest_0197at 194.350 kb on + strand, within Psest_0197at 194.351 kb on - strand, within Psest_0197at 194.351 kb on - strand, within Psest_0197at 194.351 kb on - strand, within Psest_0197at 194.351 kb on - strand, within Psest_0197at 194.351 kb on - strand, within Psest_0197at 194.351 kb on - strand, within Psest_0197at 194.351 kb on - strand, within Psest_0197at 194.351 kb on - strand, within Psest_0197at 194.365 kb on + strand, within Psest_0197at 194.365 kb on + strand, within Psest_0197at 194.365 kb on + strand, within Psest_0197at 194.365 kb on + strand, within Psest_0197at 194.365 kb on + strand, within Psest_0197at 194.366 kb on - strand, within Psest_0197at 194.366 kb on - strand, within Psest_0197at 194.366 kb on - strand, within Psest_0197at 194.410 kb on + strand, within Psest_0197at 194.411 kb on - strand, within Psest_0197at 194.411 kb on - strand, within Psest_0197at 194.426 kb on - strand, within Psest_0197at 194.426 kb on - strand, within Psest_0197at 194.686 kb on + strand, within Psest_0197at 194.686 kb on + strand, within Psest_0197at 194.686 kb on + strand, within Psest_0197at 194.686 kb on + strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.687 kb on - strand, within Psest_0197at 194.870 kb on + strand, within Psest_0197at 194.872 kb on + strand, within Psest_0197at 194.872 kb on + strand, within Psest_0197at 194.873 kb on - strand, within Psest_0197at 194.873 kb on - strand, within Psest_0197at 194.884 kb on - strand, within Psest_0197at 194.949 kb on - strand, within Psest_0197at 195.189 kb on + strandat 195.190 kb on - strandat 195.465 kb on - strandat 195.465 kb on - strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.485 kb on + strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.486 kb on - strandat 195.488 kb on + strandat 195.489 kb on - strandat 195.620 kb on + strand, within Psest_0198at 195.620 kb on + strand, within Psest_0198at 195.621 kb on - strand, within Psest_0198at 195.704 kb on + strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.705 kb on - strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.734 kb on + strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.735 kb on - strand, within Psest_0198at 195.738 kb on - strand, within Psest_0198at 195.738 kb on - strand, within Psest_0198at 195.738 kb on - strand, within Psest_0198at 195.848 kb on + strand, within Psest_0198at 195.848 kb on + strand, within Psest_0198at 195.848 kb on + strand, within Psest_0198at 195.849 kb on - strand, within Psest_0198at 195.849 kb on - strand, within Psest_0198at 195.849 kb on - strand, within Psest_0198at 195.849 kb on - strand, within Psest_0198at 196.061 kb on - strand, within Psest_0198at 196.155 kb on - strand, within Psest_0198at 196.155 kb on - strand, within Psest_0198at 196.155 kb on - strand, within Psest_0198at 196.304 kb on + strand, within Psest_0198at 196.305 kb on - strand, within Psest_0198at 196.305 kb on - strand, within Psest_0198at 196.307 kb on + strand, within Psest_0198at 196.308 kb on - strand, within Psest_0198at 196.308 kb on - strand, within Psest_0198

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
remove
191,865 + Psest_0196 0.36 -1.1
191,866 - Psest_0196 0.36 +0.0
191,866 - Psest_0196 0.36 -1.5
191,866 - Psest_0196 0.36 -0.5
191,866 - Psest_0196 0.36 -2.6
191,905 + Psest_0196 0.39 -0.0
191,905 + Psest_0196 0.39 +0.2
191,905 + Psest_0196 0.39 -3.2
191,905 + Psest_0196 0.39 -1.5
191,905 + Psest_0196 0.39 -0.4
191,906 - Psest_0196 0.39 -1.6
192,047 - Psest_0196 0.50 -0.5
192,047 - Psest_0196 0.50 -0.6
192,047 - Psest_0196 0.50 +0.3
192,206 + Psest_0196 0.63 -2.8
192,207 - Psest_0196 0.63 -1.7
192,207 - Psest_0196 0.63 -0.4
192,207 - Psest_0196 0.63 -1.2
192,207 - Psest_0196 0.63 -0.9
192,207 - Psest_0196 0.63 -1.4
192,208 + Psest_0196 0.63 -1.3
192,208 + Psest_0196 0.63 +0.7
192,208 + Psest_0196 0.63 -2.6
192,208 + Psest_0196 0.63 -1.9
192,208 + Psest_0196 0.63 -1.3
192,208 + Psest_0196 0.63 -0.8
192,208 + Psest_0196 0.63 +0.5
192,208 + Psest_0196 0.63 -0.5
192,209 - Psest_0196 0.63 -2.0
192,209 - Psest_0196 0.63 -1.1
192,209 - Psest_0196 0.63 -1.9
192,209 - Psest_0196 0.63 +0.1
192,209 - Psest_0196 0.63 -2.4
192,268 + Psest_0196 0.68 -2.7
192,372 + Psest_0196 0.77 +0.5
192,529 + Psest_0196 0.90 -3.5
192,529 + Psest_0196 0.90 -1.4
192,529 + Psest_0196 0.90 +0.5
192,529 + Psest_0196 0.90 -0.6
192,529 + Psest_0196 0.90 -0.1
192,529 + Psest_0196 0.90 -0.3
192,529 + Psest_0196 0.90 -0.5
192,529 + Psest_0196 0.90 -2.7
192,529 + Psest_0196 0.90 +0.6
192,529 + Psest_0196 0.90 -1.9
192,529 + Psest_0196 0.90 -0.9
192,529 + Psest_0196 0.90 -0.6
192,529 + Psest_0196 0.90 -0.3
192,529 + Psest_0196 0.90 -1.6
192,529 + Psest_0196 0.90 -0.9
192,529 + Psest_0196 0.90 -1.8
192,530 - Psest_0196 0.90 -1.2
192,530 - Psest_0196 0.90 -2.3
192,530 - Psest_0196 0.90 +0.3
192,530 - Psest_0196 0.90 -1.5
192,530 - Psest_0196 0.90 -0.8
192,530 - Psest_0196 0.90 -1.1
192,530 - Psest_0196 0.90 -3.8
192,530 - Psest_0196 0.90 -1.7
192,530 - Psest_0196 0.90 -2.2
192,530 - Psest_0196 0.90 -3.1
192,530 - Psest_0196 0.90 -2.9
192,530 - Psest_0196 0.90 -1.9
192,530 - Psest_0196 0.90 -0.5
192,530 - Psest_0196 0.90 -2.4
192,530 - Psest_0196 0.90 -1.9
192,530 - Psest_0196 0.90 +0.5
192,530 - Psest_0196 0.90 -2.2
192,544 + -0.1
192,544 + -0.8
192,544 + +0.5
192,545 - +2.9
192,712 - +2.6
192,712 - -1.1
192,985 + -1.5
192,985 + -0.5
192,985 + -1.8
192,985 + +1.6
193,246 + Psest_0197 0.18 +1.7
193,270 + Psest_0197 0.19 -0.7
193,270 + Psest_0197 0.19 +0.9
193,271 - Psest_0197 0.19 +0.9
193,271 - Psest_0197 0.19 -0.8
193,271 - Psest_0197 0.19 +1.3
193,414 + Psest_0197 0.24 +0.2
193,417 + Psest_0197 0.25 +0.7
193,418 - Psest_0197 0.25 +2.0
193,418 - Psest_0197 0.25 +1.2
193,418 - Psest_0197 0.25 -0.3
193,522 + Psest_0197 0.29 -0.4
193,522 + Psest_0197 0.29 -1.6
193,522 + Psest_0197 0.29 -0.1
193,523 - Psest_0197 0.29 +0.6
193,523 - Psest_0197 0.29 +1.8
193,621 + Psest_0197 0.33 -1.8
193,621 + Psest_0197 0.33 +0.7
193,621 + Psest_0197 0.33 +1.3
193,621 + Psest_0197 0.33 -0.3
193,621 + Psest_0197 0.33 +0.2
193,621 + Psest_0197 0.33 -1.9
193,621 + Psest_0197 0.33 -1.8
193,621 + Psest_0197 0.33 +1.5
193,621 + Psest_0197 0.33 +0.7
193,621 + Psest_0197 0.33 -2.2
193,621 + Psest_0197 0.33 +0.7
193,622 - Psest_0197 0.33 -0.1
193,622 - Psest_0197 0.33 -1.3
193,622 - Psest_0197 0.33 +1.7
193,622 - Psest_0197 0.33 -1.4
193,622 - Psest_0197 0.33 +0.7
193,622 - Psest_0197 0.33 +0.4
193,622 - Psest_0197 0.33 +1.9
193,622 - Psest_0197 0.33 +0.7
193,622 - Psest_0197 0.33 -0.2
193,622 - Psest_0197 0.33 +0.6
194,215 + Psest_0197 0.56 +2.9
194,215 + Psest_0197 0.56 +0.1
194,215 + Psest_0197 0.56 +0.4
194,216 - Psest_0197 0.56 +2.3
194,216 - Psest_0197 0.56 +0.7
194,350 + Psest_0197 0.61 +0.9
194,350 + Psest_0197 0.61 +0.1
194,350 + Psest_0197 0.61 +1.2
194,350 + Psest_0197 0.61 -0.1
194,351 - Psest_0197 0.61 +2.0
194,351 - Psest_0197 0.61 -0.7
194,351 - Psest_0197 0.61 -0.2
194,351 - Psest_0197 0.61 -0.9
194,351 - Psest_0197 0.61 -0.2
194,351 - Psest_0197 0.61 +0.3
194,351 - Psest_0197 0.61 +0.7
194,351 - Psest_0197 0.61 +0.4
194,365 + Psest_0197 0.62 +0.1
194,365 + Psest_0197 0.62 +2.4
194,365 + Psest_0197 0.62 -1.3
194,365 + Psest_0197 0.62 +0.9
194,365 + Psest_0197 0.62 +0.3
194,366 - Psest_0197 0.62 -0.5
194,366 - Psest_0197 0.62 -0.1
194,366 - Psest_0197 0.62 -2.6
194,410 + Psest_0197 0.63 +1.9
194,411 - Psest_0197 0.64 +0.2
194,411 - Psest_0197 0.64 +0.6
194,426 - Psest_0197 0.64 -0.5
194,426 - Psest_0197 0.64 +0.5
194,686 + Psest_0197 0.74 +0.7
194,686 + Psest_0197 0.74 -2.6
194,686 + Psest_0197 0.74 -1.1
194,686 + Psest_0197 0.74 +4.3
194,687 - Psest_0197 0.74 +1.5
194,687 - Psest_0197 0.74 +0.9
194,687 - Psest_0197 0.74 -0.8
194,687 - Psest_0197 0.74 -0.9
194,687 - Psest_0197 0.74 +0.2
194,687 - Psest_0197 0.74 -1.3
194,687 - Psest_0197 0.74 -0.2
194,687 - Psest_0197 0.74 +0.7
194,687 - Psest_0197 0.74 +0.3
194,687 - Psest_0197 0.74 +1.1
194,687 - Psest_0197 0.74 +0.2
194,870 + Psest_0197 0.82 +0.2
194,872 + Psest_0197 0.82 +1.5
194,872 + Psest_0197 0.82 -1.0
194,873 - Psest_0197 0.82 +1.1
194,873 - Psest_0197 0.82 -0.7
194,884 - Psest_0197 0.82 +2.5
194,949 - Psest_0197 0.85 +0.3
195,189 + +3.0
195,190 - +1.9
195,465 - +0.8
195,465 - +1.5
195,485 + +2.1
195,485 + +2.7
195,485 + +3.1
195,485 + -2.3
195,485 + +1.2
195,485 + +0.7
195,486 - +0.3
195,486 - +0.2
195,486 - -1.1
195,486 - -1.1
195,486 - +3.1
195,486 - +0.2
195,486 - +0.7
195,488 + -0.5
195,489 - -2.1
195,620 + Psest_0198 0.16 -0.8
195,620 + Psest_0198 0.16 +0.9
195,621 - Psest_0198 0.16 -1.5
195,704 + Psest_0198 0.25 -0.4
195,705 - Psest_0198 0.25 +1.4
195,705 - Psest_0198 0.25 +0.1
195,705 - Psest_0198 0.25 +1.3
195,705 - Psest_0198 0.25 -0.8
195,705 - Psest_0198 0.25 +0.7
195,705 - Psest_0198 0.25 +0.3
195,734 + Psest_0198 0.28 +0.4
195,734 + Psest_0198 0.28 -0.1
195,734 + Psest_0198 0.28 +1.3
195,734 + Psest_0198 0.28 +0.4
195,734 + Psest_0198 0.28 +0.7
195,734 + Psest_0198 0.28 +0.3
195,734 + Psest_0198 0.28 -0.2
195,735 - Psest_0198 0.28 -0.5
195,735 - Psest_0198 0.28 +2.5
195,735 - Psest_0198 0.28 +0.7
195,735 - Psest_0198 0.28 +0.9
195,735 - Psest_0198 0.28 +1.1
195,735 - Psest_0198 0.28 +1.7
195,738 - Psest_0198 0.28 +2.5
195,738 - Psest_0198 0.28 +0.3
195,738 - Psest_0198 0.28 +3.2
195,848 + Psest_0198 0.40 -2.7
195,848 + Psest_0198 0.40 +0.3
195,848 + Psest_0198 0.40 -1.2
195,849 - Psest_0198 0.40 +0.6
195,849 - Psest_0198 0.40 +0.1
195,849 - Psest_0198 0.40 +0.7
195,849 - Psest_0198 0.40 +1.9
196,061 - Psest_0198 0.62 -0.4
196,155 - Psest_0198 0.72 +1.8
196,155 - Psest_0198 0.72 +0.7
196,155 - Psest_0198 0.72 +0.5
196,304 + Psest_0198 0.87 +0.7
196,305 - Psest_0198 0.87 -0.9
196,305 - Psest_0198 0.87 -0.2
196,307 + Psest_0198 0.87 +0.7
196,308 - Psest_0198 0.87 -0.6
196,308 - Psest_0198 0.87 +0.9

Or see this region's nucleotide sequence