Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1800 and Psest_1801 are separated by 199 nucleotides Psest_1801 and Psest_1802 are separated by 132 nucleotides
Psest_1800: Psest_1800 - anion transporter, at 1,894,776 to 1,896,224
_1800
Psest_1801: Psest_1801 - 3-deoxy-7-phosphoheptulonate synthase, class II, at 1,896,424 to 1,897,773
_1801
Psest_1802: Psest_1802 - Spermidine synthase, at 1,897,906 to 1,898,655
_1802
Position (kb)
1896
1897
1898 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1895.517 kb on + strand, within Psest_1800 at 1895.518 kb on - strand, within Psest_1800 at 1895.584 kb on + strand, within Psest_1800 at 1895.584 kb on + strand, within Psest_1800 at 1895.584 kb on + strand, within Psest_1800 at 1895.585 kb on - strand, within Psest_1800 at 1895.585 kb on - strand, within Psest_1800 at 1895.786 kb on + strand, within Psest_1800 at 1895.787 kb on - strand, within Psest_1800 at 1896.238 kb on + strand at 1896.238 kb on + strand at 1896.238 kb on + strand at 1896.239 kb on - strand at 1896.243 kb on - strand at 1896.243 kb on - strand at 1896.243 kb on - strand at 1896.243 kb on - strand at 1896.243 kb on - strand at 1896.298 kb on + strand at 1896.299 kb on - strand at 1896.299 kb on - strand at 1896.308 kb on + strand at 1896.312 kb on + strand at 1896.312 kb on + strand at 1896.340 kb on + strand at 1896.340 kb on + strand at 1896.341 kb on - strand at 1896.341 kb on - strand at 1896.341 kb on - strand at 1896.343 kb on + strand at 1896.343 kb on + strand at 1896.351 kb on + strand at 1896.351 kb on + strand at 1896.351 kb on + strand at 1896.352 kb on - strand at 1896.390 kb on + strand at 1896.390 kb on + strand at 1896.390 kb on + strand at 1896.390 kb on + strand at 1896.412 kb on + strand at 1896.412 kb on + strand at 1896.412 kb on + strand at 1896.413 kb on - strand at 1896.413 kb on - strand at 1896.518 kb on + strand at 1896.615 kb on - strand, within Psest_1801 at 1896.690 kb on - strand, within Psest_1801 at 1897.055 kb on + strand, within Psest_1801 at 1897.055 kb on + strand, within Psest_1801 at 1897.055 kb on + strand, within Psest_1801 at 1897.055 kb on + strand, within Psest_1801 at 1897.055 kb on + strand, within Psest_1801 at 1897.055 kb on + strand, within Psest_1801 at 1897.056 kb on - strand, within Psest_1801 at 1897.056 kb on - strand, within Psest_1801 at 1897.143 kb on + strand, within Psest_1801 at 1897.178 kb on + strand, within Psest_1801 at 1897.178 kb on + strand, within Psest_1801 at 1897.855 kb on + strand at 1897.856 kb on - strand at 1897.965 kb on - strand at 1898.024 kb on + strand, within Psest_1802 at 1898.025 kb on - strand, within Psest_1802 at 1898.059 kb on + strand, within Psest_1802 at 1898.059 kb on + strand, within Psest_1802 at 1898.121 kb on - strand, within Psest_1802 at 1898.257 kb on + strand, within Psest_1802 at 1898.257 kb on + strand, within Psest_1802 at 1898.257 kb on + strand, within Psest_1802 at 1898.257 kb on + strand, within Psest_1802 at 1898.257 kb on + strand, within Psest_1802 at 1898.258 kb on - strand, within Psest_1802 at 1898.258 kb on - strand, within Psest_1802 at 1898.258 kb on - strand, within Psest_1802 at 1898.258 kb on - strand, within Psest_1802 at 1898.258 kb on - strand, within Psest_1802 at 1898.330 kb on - strand, within Psest_1802 at 1898.330 kb on - strand, within Psest_1802 at 1898.653 kb on + strand at 1898.654 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 1,895,517 + Psest_1800 0.51 +1.7 1,895,518 - Psest_1800 0.51 -0.0 1,895,584 + Psest_1800 0.56 -0.2 1,895,584 + Psest_1800 0.56 +0.8 1,895,584 + Psest_1800 0.56 -2.2 1,895,585 - Psest_1800 0.56 +0.4 1,895,585 - Psest_1800 0.56 -1.3 1,895,786 + Psest_1800 0.70 +0.2 1,895,787 - Psest_1800 0.70 +1.8 1,896,238 + -0.5 1,896,238 + -1.3 1,896,238 + -0.3 1,896,239 - +0.0 1,896,243 - -1.2 1,896,243 - +0.0 1,896,243 - +0.4 1,896,243 - -0.9 1,896,243 - +0.4 1,896,298 + +2.1 1,896,299 - -0.9 1,896,299 - -1.1 1,896,308 + +1.0 1,896,312 + +1.0 1,896,312 + -0.6 1,896,340 + -0.8 1,896,340 + -2.1 1,896,341 - -0.2 1,896,341 - +0.0 1,896,341 - +0.8 1,896,343 + +0.1 1,896,343 + +0.6 1,896,351 + -0.7 1,896,351 + -2.1 1,896,351 + -0.5 1,896,352 - -0.1 1,896,390 + -2.7 1,896,390 + -2.8 1,896,390 + +1.1 1,896,390 + -0.7 1,896,412 + -0.1 1,896,412 + -1.2 1,896,412 + -0.8 1,896,413 - +0.2 1,896,413 - +0.6 1,896,518 + -2.5 1,896,615 - Psest_1801 0.14 +0.7 1,896,690 - Psest_1801 0.20 +0.8 1,897,055 + Psest_1801 0.47 -3.3 1,897,055 + Psest_1801 0.47 +0.3 1,897,055 + Psest_1801 0.47 +0.8 1,897,055 + Psest_1801 0.47 +2.3 1,897,055 + Psest_1801 0.47 +1.1 1,897,055 + Psest_1801 0.47 +2.4 1,897,056 - Psest_1801 0.47 +1.6 1,897,056 - Psest_1801 0.47 -0.5 1,897,143 + Psest_1801 0.53 -0.3 1,897,178 + Psest_1801 0.56 -1.8 1,897,178 + Psest_1801 0.56 -3.1 1,897,855 + -1.8 1,897,856 - -1.2 1,897,965 - -0.7 1,898,024 + Psest_1802 0.16 +0.2 1,898,025 - Psest_1802 0.16 -1.4 1,898,059 + Psest_1802 0.20 +0.3 1,898,059 + Psest_1802 0.20 -2.6 1,898,121 - Psest_1802 0.29 -0.4 1,898,257 + Psest_1802 0.47 -0.5 1,898,257 + Psest_1802 0.47 +0.5 1,898,257 + Psest_1802 0.47 -1.0 1,898,257 + Psest_1802 0.47 -1.2 1,898,257 + Psest_1802 0.47 -1.0 1,898,258 - Psest_1802 0.47 +1.0 1,898,258 - Psest_1802 0.47 -0.4 1,898,258 - Psest_1802 0.47 +0.5 1,898,258 - Psest_1802 0.47 -0.5 1,898,258 - Psest_1802 0.47 -0.6 1,898,330 - Psest_1802 0.57 +0.0 1,898,330 - Psest_1802 0.57 +0.2 1,898,653 + -1.1 1,898,654 - -0.4
Or see this region's nucleotide sequence