Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1614 and Psest_1615 are separated by 203 nucleotides Psest_1615 and Psest_1616 are separated by 101 nucleotides Psest_1616 and Psest_1617 are separated by 58 nucleotides Psest_1617 and Psest_1618 overlap by 7 nucleotides
Psest_1614: Psest_1614 - ABC-type uncharacterized transport system involved in gliding motility, auxiliary component, at 1,717,875 to 1,719,710
_1614
Psest_1615: Psest_1615 - Cold shock proteins, at 1,719,914 to 1,720,123
_1615
Psest_1616: Psest_1616 - hypothetical protein, at 1,720,225 to 1,720,596
_1616
Psest_1617: Psest_1617 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 1,720,655 to 1,721,461
_1617
Psest_1618: Psest_1618 - succinyl-diaminopimelate desuccinylase, proteobacterial clade, at 1,721,455 to 1,722,603
_1618
Position (kb)
1720
1721
1722 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1719.801 kb on + strand at 1719.802 kb on - strand at 1719.802 kb on - strand at 1719.802 kb on - strand at 1719.803 kb on + strand at 1719.804 kb on - strand at 1719.867 kb on - strand at 1719.913 kb on - strand at 1720.173 kb on + strand at 1720.184 kb on + strand at 1720.203 kb on + strand at 1720.571 kb on + strand at 1720.571 kb on + strand at 1720.571 kb on + strand at 1720.571 kb on + strand at 1720.572 kb on - strand at 1720.572 kb on - strand at 1720.572 kb on - strand at 1720.572 kb on - strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.609 kb on + strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.610 kb on - strand at 1720.656 kb on + strand at 1720.656 kb on + strand at 1720.657 kb on - strand at 1720.680 kb on + strand at 1720.812 kb on + strand, within Psest_1617 at 1720.882 kb on - strand, within Psest_1617 at 1720.900 kb on - strand, within Psest_1617 at 1721.178 kb on + strand, within Psest_1617 at 1721.179 kb on - strand, within Psest_1617 at 1721.179 kb on - strand, within Psest_1617 at 1721.408 kb on + strand at 1721.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 1,719,801 + +0.4 1,719,802 - +1.1 1,719,802 - +0.6 1,719,802 - -1.5 1,719,803 + +0.5 1,719,804 - -0.7 1,719,867 - -0.6 1,719,913 - +1.0 1,720,173 + -0.4 1,720,184 + +1.6 1,720,203 + -0.6 1,720,571 + +1.1 1,720,571 + -3.9 1,720,571 + +1.2 1,720,571 + -0.8 1,720,572 - -1.0 1,720,572 - +1.1 1,720,572 - -1.7 1,720,572 - -1.3 1,720,609 + -1.5 1,720,609 + -1.3 1,720,609 + -0.1 1,720,609 + +1.9 1,720,609 + -1.5 1,720,609 + -0.6 1,720,610 - -0.0 1,720,610 - -2.0 1,720,610 - +0.4 1,720,610 - -1.5 1,720,610 - +0.3 1,720,610 - -1.4 1,720,610 - +1.9 1,720,610 - +0.3 1,720,610 - -1.0 1,720,610 - -1.3 1,720,610 - -1.6 1,720,610 - -1.3 1,720,656 + -0.5 1,720,656 + -0.2 1,720,657 - +0.3 1,720,680 + -0.9 1,720,812 + Psest_1617 0.19 +1.0 1,720,882 - Psest_1617 0.28 +2.2 1,720,900 - Psest_1617 0.30 +1.1 1,721,178 + Psest_1617 0.65 -0.7 1,721,179 - Psest_1617 0.65 +0.8 1,721,179 - Psest_1617 0.65 +1.1 1,721,408 + +1.3 1,721,409 - -1.7
Or see this region's nucleotide sequence