Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1535

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1532 and Psest_1533 are separated by 214 nucleotidesPsest_1533 and Psest_1534 are separated by 13 nucleotidesPsest_1534 and Psest_1535 are separated by 257 nucleotidesPsest_1535 and Psest_1536 are separated by 71 nucleotidesPsest_1536 and Psest_1537 are separated by 191 nucleotides Psest_1532: Psest_1532 - DNA recombination-dependent growth factor C, at 1,634,086 to 1,635,006 _1532 Psest_1533: Psest_1533 - tRNA_Val_TAC, at 1,635,221 to 1,635,296 _1533 Psest_1534: Psest_1534 - tRNA_Asp_GTC, at 1,635,310 to 1,635,386 _1534 Psest_1535: Psest_1535 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 1,635,644 to 1,636,387 _1535 Psest_1536: Psest_1536 - bacterioferritin, at 1,636,459 to 1,636,929 _1536 Psest_1537: Psest_1537 - Bacterioferritin-associated ferredoxin, at 1,637,121 to 1,637,339 _1537 Position (kb) 1635 1636 1637Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1634.708 kb on + strand, within Psest_1532at 1634.708 kb on + strand, within Psest_1532at 1634.708 kb on + strand, within Psest_1532at 1634.708 kb on + strand, within Psest_1532at 1634.709 kb on - strand, within Psest_1532at 1634.755 kb on + strand, within Psest_1532at 1634.836 kb on + strand, within Psest_1532at 1634.837 kb on - strand, within Psest_1532at 1634.882 kb on + strand, within Psest_1532at 1634.882 kb on + strand, within Psest_1532at 1634.882 kb on + strand, within Psest_1532at 1635.015 kb on - strandat 1635.015 kb on - strandat 1635.042 kb on + strandat 1635.056 kb on + strandat 1635.057 kb on - strandat 1635.061 kb on - strandat 1635.061 kb on - strandat 1635.471 kb on + strandat 1635.518 kb on + strandat 1635.593 kb on + strandat 1635.593 kb on + strandat 1635.594 kb on - strandat 1635.696 kb on + strandat 1635.758 kb on + strand, within Psest_1535at 1635.860 kb on - strand, within Psest_1535at 1636.235 kb on + strand, within Psest_1535at 1636.235 kb on + strand, within Psest_1535at 1636.236 kb on - strand, within Psest_1535at 1636.236 kb on - strand, within Psest_1535at 1636.385 kb on + strandat 1636.385 kb on + strandat 1636.386 kb on - strandat 1636.484 kb on + strandat 1636.611 kb on - strand, within Psest_1536at 1636.796 kb on + strand, within Psest_1536at 1636.796 kb on + strand, within Psest_1536at 1636.797 kb on - strand, within Psest_1536at 1636.835 kb on + strand, within Psest_1536at 1636.835 kb on + strand, within Psest_1536at 1636.835 kb on + strand, within Psest_1536at 1636.835 kb on + strand, within Psest_1536at 1636.836 kb on - strand, within Psest_1536at 1636.836 kb on - strand, within Psest_1536at 1636.836 kb on - strand, within Psest_1536at 1636.836 kb on - strand, within Psest_1536at 1636.836 kb on - strand, within Psest_1536at 1636.836 kb on - strand, within Psest_1536at 1636.856 kb on + strand, within Psest_1536at 1636.856 kb on + strand, within Psest_1536at 1636.856 kb on + strand, within Psest_1536at 1636.857 kb on - strand, within Psest_1536at 1636.857 kb on - strand, within Psest_1536at 1636.857 kb on - strand, within Psest_1536at 1636.871 kb on - strand, within Psest_1536at 1636.931 kb on + strandat 1636.931 kb on + strandat 1636.931 kb on + strandat 1636.931 kb on + strandat 1636.931 kb on + strandat 1636.931 kb on + strandat 1636.931 kb on + strandat 1636.931 kb on + strandat 1636.932 kb on - strandat 1636.932 kb on - strandat 1636.932 kb on - strandat 1636.932 kb on - strandat 1636.932 kb on - strandat 1636.932 kb on - strandat 1636.932 kb on - strandat 1636.958 kb on + strandat 1636.958 kb on + strandat 1636.997 kb on + strandat 1636.998 kb on - strandat 1636.998 kb on - strandat 1636.998 kb on - strandat 1637.146 kb on + strand, within Psest_1537at 1637.172 kb on + strand, within Psest_1537at 1637.172 kb on + strand, within Psest_1537at 1637.172 kb on + strand, within Psest_1537at 1637.173 kb on - strand, within Psest_1537at 1637.173 kb on - strand, within Psest_1537at 1637.173 kb on - strand, within Psest_1537at 1637.173 kb on - strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.284 kb on + strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.285 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.289 kb on - strand, within Psest_1537at 1637.335 kb on + strandat 1637.335 kb on + strandat 1637.335 kb on + strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.336 kb on - strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.339 kb on + strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strandat 1637.340 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,634,708 + Psest_1532 0.68 -2.9
1,634,708 + Psest_1532 0.68 -2.1
1,634,708 + Psest_1532 0.68 -1.2
1,634,708 + Psest_1532 0.68 -2.4
1,634,709 - Psest_1532 0.68 -2.1
1,634,755 + Psest_1532 0.73 -2.1
1,634,836 + Psest_1532 0.81 -1.0
1,634,837 - Psest_1532 0.82 -1.5
1,634,882 + Psest_1532 0.86 -0.6
1,634,882 + Psest_1532 0.86 -2.1
1,634,882 + Psest_1532 0.86 -2.5
1,635,015 - -1.0
1,635,015 - -0.3
1,635,042 + -0.8
1,635,056 + -1.3
1,635,057 - -2.1
1,635,061 - +1.4
1,635,061 - +0.2
1,635,471 + -2.7
1,635,518 + -1.1
1,635,593 + -0.4
1,635,593 + -0.6
1,635,594 - -1.2
1,635,696 + -1.4
1,635,758 + Psest_1535 0.15 -0.8
1,635,860 - Psest_1535 0.29 -1.1
1,636,235 + Psest_1535 0.79 -0.7
1,636,235 + Psest_1535 0.79 -0.9
1,636,236 - Psest_1535 0.80 -1.2
1,636,236 - Psest_1535 0.80 -1.8
1,636,385 + +1.0
1,636,385 + +0.9
1,636,386 - +0.2
1,636,484 + -1.0
1,636,611 - Psest_1536 0.32 -0.4
1,636,796 + Psest_1536 0.72 +0.1
1,636,796 + Psest_1536 0.72 +1.6
1,636,797 - Psest_1536 0.72 +1.4
1,636,835 + Psest_1536 0.80 +0.1
1,636,835 + Psest_1536 0.80 +1.5
1,636,835 + Psest_1536 0.80 -0.4
1,636,835 + Psest_1536 0.80 -0.6
1,636,836 - Psest_1536 0.80 -0.8
1,636,836 - Psest_1536 0.80 -1.3
1,636,836 - Psest_1536 0.80 +2.4
1,636,836 - Psest_1536 0.80 -0.0
1,636,836 - Psest_1536 0.80 -0.5
1,636,836 - Psest_1536 0.80 +0.4
1,636,856 + Psest_1536 0.84 -1.4
1,636,856 + Psest_1536 0.84 -1.8
1,636,856 + Psest_1536 0.84 -0.2
1,636,857 - Psest_1536 0.85 -0.9
1,636,857 - Psest_1536 0.85 -0.6
1,636,857 - Psest_1536 0.85 +0.4
1,636,871 - Psest_1536 0.87 -1.0
1,636,931 + +0.3
1,636,931 + -0.5
1,636,931 + +1.4
1,636,931 + -2.8
1,636,931 + -1.8
1,636,931 + -2.1
1,636,931 + -3.2
1,636,931 + +1.4
1,636,932 - +0.7
1,636,932 - -0.8
1,636,932 - -1.7
1,636,932 - +0.4
1,636,932 - -0.7
1,636,932 - +1.5
1,636,932 - +0.0
1,636,958 + +1.1
1,636,958 + +0.3
1,636,997 + +1.6
1,636,998 - -0.1
1,636,998 - +0.1
1,636,998 - -1.6
1,637,146 + Psest_1537 0.11 -0.6
1,637,172 + Psest_1537 0.23 +0.5
1,637,172 + Psest_1537 0.23 +1.2
1,637,172 + Psest_1537 0.23 -1.4
1,637,173 - Psest_1537 0.24 -0.4
1,637,173 - Psest_1537 0.24 -3.5
1,637,173 - Psest_1537 0.24 -0.0
1,637,173 - Psest_1537 0.24 +1.4
1,637,284 + Psest_1537 0.74 -1.8
1,637,284 + Psest_1537 0.74 +1.9
1,637,284 + Psest_1537 0.74 -0.8
1,637,284 + Psest_1537 0.74 +0.4
1,637,284 + Psest_1537 0.74 -1.2
1,637,285 - Psest_1537 0.75 -0.9
1,637,285 - Psest_1537 0.75 +0.1
1,637,285 - Psest_1537 0.75 -2.7
1,637,285 - Psest_1537 0.75 +2.4
1,637,285 - Psest_1537 0.75 -1.8
1,637,285 - Psest_1537 0.75 -0.2
1,637,285 - Psest_1537 0.75 -1.1
1,637,285 - Psest_1537 0.75 +0.6
1,637,285 - Psest_1537 0.75 +0.8
1,637,285 - Psest_1537 0.75 -1.1
1,637,285 - Psest_1537 0.75 -2.3
1,637,285 - Psest_1537 0.75 -1.6
1,637,289 - Psest_1537 0.77 -2.1
1,637,289 - Psest_1537 0.77 +0.9
1,637,289 - Psest_1537 0.77 -0.8
1,637,289 - Psest_1537 0.77 +1.4
1,637,289 - Psest_1537 0.77 +2.1
1,637,289 - Psest_1537 0.77 -0.9
1,637,335 + +1.4
1,637,335 + -0.6
1,637,335 + -1.7
1,637,336 - -1.2
1,637,336 - -0.6
1,637,336 - +1.5
1,637,336 - -0.3
1,637,336 - +1.3
1,637,336 - +2.5
1,637,336 - -1.2
1,637,336 - +0.4
1,637,339 + -0.4
1,637,339 + -1.0
1,637,339 + -1.6
1,637,339 + -2.4
1,637,339 + +0.8
1,637,339 + +0.6
1,637,340 - -2.3
1,637,340 - -0.6
1,637,340 - -1.8
1,637,340 - -0.9
1,637,340 - +2.3
1,637,340 - +0.1
1,637,340 - +0.7
1,637,340 - +0.9
1,637,340 - +0.6
1,637,340 - -0.5
1,637,340 - +0.3
1,637,340 - -0.7
1,637,340 - +0.9

Or see this region's nucleotide sequence