Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1475 and Psest_1476 are separated by 53 nucleotides Psest_1476 and Psest_1477 overlap by 4 nucleotides Psest_1477 and Psest_1478 are separated by 50 nucleotides
Psest_1475: Psest_1475 - Uncharacterized protein conserved in bacteria, at 1,580,141 to 1,581,190
_1475
Psest_1476: Psest_1476 - Predicted permease, at 1,581,244 to 1,582,341
_1476
Psest_1477: Psest_1477 - DnaA regulatory inactivator Hda, at 1,582,338 to 1,583,042
_1477
Psest_1478: Psest_1478 - Predicted membrane protein, at 1,583,093 to 1,583,503
_1478
Position (kb)
1581
1582
1583 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1580.386 kb on + strand, within Psest_1475 at 1580.387 kb on - strand, within Psest_1475 at 1580.387 kb on - strand, within Psest_1475 at 1580.390 kb on + strand, within Psest_1475 at 1580.390 kb on + strand, within Psest_1475 at 1580.390 kb on + strand, within Psest_1475 at 1580.391 kb on - strand, within Psest_1475 at 1580.391 kb on - strand, within Psest_1475 at 1580.411 kb on - strand, within Psest_1475 at 1580.668 kb on + strand, within Psest_1475 at 1580.702 kb on + strand, within Psest_1475 at 1581.166 kb on + strand at 1581.188 kb on + strand at 1581.189 kb on - strand at 1581.191 kb on + strand at 1581.191 kb on + strand at 1581.192 kb on - strand at 1581.192 kb on - strand at 1581.192 kb on - strand at 1581.204 kb on - strand at 1581.310 kb on + strand at 1581.310 kb on + strand at 1581.319 kb on - strand at 1581.330 kb on + strand at 1581.331 kb on - strand at 1581.361 kb on + strand, within Psest_1476 at 1581.362 kb on - strand, within Psest_1476 at 1581.512 kb on - strand, within Psest_1476 at 1581.645 kb on + strand, within Psest_1476 at 1581.646 kb on - strand, within Psest_1476 at 1581.665 kb on + strand, within Psest_1476 at 1581.681 kb on + strand, within Psest_1476 at 1581.682 kb on - strand, within Psest_1476 at 1581.748 kb on + strand, within Psest_1476 at 1581.748 kb on + strand, within Psest_1476 at 1581.748 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.907 kb on + strand, within Psest_1476 at 1581.908 kb on - strand, within Psest_1476 at 1581.908 kb on - strand, within Psest_1476 at 1581.908 kb on - strand, within Psest_1476 at 1581.908 kb on - strand, within Psest_1476 at 1581.921 kb on + strand, within Psest_1476 at 1581.921 kb on + strand, within Psest_1476 at 1581.921 kb on + strand, within Psest_1476 at 1581.921 kb on + strand, within Psest_1476 at 1581.922 kb on - strand, within Psest_1476 at 1581.922 kb on - strand, within Psest_1476 at 1581.922 kb on - strand, within Psest_1476 at 1581.922 kb on - strand, within Psest_1476 at 1581.988 kb on + strand, within Psest_1476 at 1581.988 kb on + strand, within Psest_1476 at 1581.988 kb on + strand, within Psest_1476 at 1581.988 kb on + strand, within Psest_1476 at 1581.988 kb on + strand, within Psest_1476 at 1581.989 kb on - strand, within Psest_1476 at 1582.082 kb on + strand, within Psest_1476 at 1582.082 kb on + strand, within Psest_1476 at 1582.083 kb on - strand, within Psest_1476 at 1582.083 kb on - strand, within Psest_1476 at 1582.083 kb on - strand, within Psest_1476 at 1582.086 kb on + strand, within Psest_1476 at 1582.276 kb on + strand at 1582.277 kb on - strand at 1583.142 kb on + strand, within Psest_1478 at 1583.142 kb on + strand, within Psest_1478 at 1583.142 kb on + strand, within Psest_1478 at 1583.142 kb on + strand, within Psest_1478 at 1583.142 kb on + strand, within Psest_1478 at 1583.142 kb on + strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.143 kb on - strand, within Psest_1478 at 1583.196 kb on + strand, within Psest_1478 at 1583.196 kb on + strand, within Psest_1478 at 1583.196 kb on + strand, within Psest_1478 at 1583.196 kb on + strand, within Psest_1478 at 1583.197 kb on - strand, within Psest_1478 at 1583.244 kb on + strand, within Psest_1478 at 1583.244 kb on + strand, within Psest_1478 at 1583.244 kb on + strand, within Psest_1478 at 1583.244 kb on + strand, within Psest_1478 at 1583.257 kb on + strand, within Psest_1478
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 1,580,386 + Psest_1475 0.23 +1.7 1,580,387 - Psest_1475 0.23 -0.2 1,580,387 - Psest_1475 0.23 -1.5 1,580,390 + Psest_1475 0.24 +0.4 1,580,390 + Psest_1475 0.24 +0.3 1,580,390 + Psest_1475 0.24 +0.7 1,580,391 - Psest_1475 0.24 -2.2 1,580,391 - Psest_1475 0.24 -0.4 1,580,411 - Psest_1475 0.26 -2.2 1,580,668 + Psest_1475 0.50 +0.8 1,580,702 + Psest_1475 0.53 -2.8 1,581,166 + +1.0 1,581,188 + +0.7 1,581,189 - -3.5 1,581,191 + -0.2 1,581,191 + -0.0 1,581,192 - -0.2 1,581,192 - -2.1 1,581,192 - -1.6 1,581,204 - -1.2 1,581,310 + +0.1 1,581,310 + -1.8 1,581,319 - -2.2 1,581,330 + -1.1 1,581,331 - +0.6 1,581,361 + Psest_1476 0.11 -0.8 1,581,362 - Psest_1476 0.11 +1.4 1,581,512 - Psest_1476 0.24 -1.9 1,581,645 + Psest_1476 0.37 -2.3 1,581,646 - Psest_1476 0.37 -0.0 1,581,665 + Psest_1476 0.38 +0.8 1,581,681 + Psest_1476 0.40 -0.5 1,581,682 - Psest_1476 0.40 +0.9 1,581,748 + Psest_1476 0.46 -1.0 1,581,748 + Psest_1476 0.46 +0.1 1,581,748 + Psest_1476 0.46 -1.6 1,581,907 + Psest_1476 0.60 -2.1 1,581,907 + Psest_1476 0.60 -1.0 1,581,907 + Psest_1476 0.60 -2.5 1,581,907 + Psest_1476 0.60 +0.7 1,581,907 + Psest_1476 0.60 -0.1 1,581,907 + Psest_1476 0.60 -0.9 1,581,907 + Psest_1476 0.60 -2.3 1,581,907 + Psest_1476 0.60 -1.3 1,581,907 + Psest_1476 0.60 -0.2 1,581,907 + Psest_1476 0.60 -1.3 1,581,907 + Psest_1476 0.60 -0.5 1,581,907 + Psest_1476 0.60 +0.2 1,581,907 + Psest_1476 0.60 -2.2 1,581,907 + Psest_1476 0.60 -1.0 1,581,908 - Psest_1476 0.60 -0.2 1,581,908 - Psest_1476 0.60 +0.4 1,581,908 - Psest_1476 0.60 +0.9 1,581,908 - Psest_1476 0.60 -3.6 1,581,921 + Psest_1476 0.62 -0.8 1,581,921 + Psest_1476 0.62 +1.0 1,581,921 + Psest_1476 0.62 -1.1 1,581,921 + Psest_1476 0.62 -1.2 1,581,922 - Psest_1476 0.62 -1.4 1,581,922 - Psest_1476 0.62 +0.3 1,581,922 - Psest_1476 0.62 -1.0 1,581,922 - Psest_1476 0.62 -2.0 1,581,988 + Psest_1476 0.68 +2.0 1,581,988 + Psest_1476 0.68 -1.1 1,581,988 + Psest_1476 0.68 -1.6 1,581,988 + Psest_1476 0.68 +0.2 1,581,988 + Psest_1476 0.68 -2.1 1,581,989 - Psest_1476 0.68 +0.2 1,582,082 + Psest_1476 0.76 -2.2 1,582,082 + Psest_1476 0.76 -1.8 1,582,083 - Psest_1476 0.76 -0.5 1,582,083 - Psest_1476 0.76 -2.0 1,582,083 - Psest_1476 0.76 -1.5 1,582,086 + Psest_1476 0.77 -2.9 1,582,276 + +1.5 1,582,277 - -1.4 1,583,142 + Psest_1478 0.12 +1.0 1,583,142 + Psest_1478 0.12 +0.6 1,583,142 + Psest_1478 0.12 +1.4 1,583,142 + Psest_1478 0.12 -0.9 1,583,142 + Psest_1478 0.12 +1.2 1,583,142 + Psest_1478 0.12 +1.2 1,583,143 - Psest_1478 0.12 +0.0 1,583,143 - Psest_1478 0.12 +0.9 1,583,143 - Psest_1478 0.12 +1.4 1,583,143 - Psest_1478 0.12 -0.0 1,583,143 - Psest_1478 0.12 +0.7 1,583,143 - Psest_1478 0.12 -0.7 1,583,143 - Psest_1478 0.12 -1.2 1,583,143 - Psest_1478 0.12 -0.2 1,583,143 - Psest_1478 0.12 +0.2 1,583,196 + Psest_1478 0.25 +1.6 1,583,196 + Psest_1478 0.25 +0.2 1,583,196 + Psest_1478 0.25 -0.7 1,583,196 + Psest_1478 0.25 -0.2 1,583,197 - Psest_1478 0.25 -0.3 1,583,244 + Psest_1478 0.37 -0.9 1,583,244 + Psest_1478 0.37 -0.3 1,583,244 + Psest_1478 0.37 +0.1 1,583,244 + Psest_1478 0.37 +1.3 1,583,257 + Psest_1478 0.40 +0.2
Or see this region's nucleotide sequence