Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1476

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1475 and Psest_1476 are separated by 53 nucleotidesPsest_1476 and Psest_1477 overlap by 4 nucleotidesPsest_1477 and Psest_1478 are separated by 50 nucleotides Psest_1475: Psest_1475 - Uncharacterized protein conserved in bacteria, at 1,580,141 to 1,581,190 _1475 Psest_1476: Psest_1476 - Predicted permease, at 1,581,244 to 1,582,341 _1476 Psest_1477: Psest_1477 - DnaA regulatory inactivator Hda, at 1,582,338 to 1,583,042 _1477 Psest_1478: Psest_1478 - Predicted membrane protein, at 1,583,093 to 1,583,503 _1478 Position (kb) 1581 1582 1583Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1580.386 kb on + strand, within Psest_1475at 1580.387 kb on - strand, within Psest_1475at 1580.387 kb on - strand, within Psest_1475at 1580.390 kb on + strand, within Psest_1475at 1580.390 kb on + strand, within Psest_1475at 1580.390 kb on + strand, within Psest_1475at 1580.391 kb on - strand, within Psest_1475at 1580.391 kb on - strand, within Psest_1475at 1580.411 kb on - strand, within Psest_1475at 1580.668 kb on + strand, within Psest_1475at 1580.702 kb on + strand, within Psest_1475at 1581.166 kb on + strandat 1581.188 kb on + strandat 1581.189 kb on - strandat 1581.191 kb on + strandat 1581.191 kb on + strandat 1581.192 kb on - strandat 1581.192 kb on - strandat 1581.192 kb on - strandat 1581.204 kb on - strandat 1581.310 kb on + strandat 1581.310 kb on + strandat 1581.319 kb on - strandat 1581.330 kb on + strandat 1581.331 kb on - strandat 1581.361 kb on + strand, within Psest_1476at 1581.362 kb on - strand, within Psest_1476at 1581.512 kb on - strand, within Psest_1476at 1581.645 kb on + strand, within Psest_1476at 1581.646 kb on - strand, within Psest_1476at 1581.665 kb on + strand, within Psest_1476at 1581.681 kb on + strand, within Psest_1476at 1581.682 kb on - strand, within Psest_1476at 1581.748 kb on + strand, within Psest_1476at 1581.748 kb on + strand, within Psest_1476at 1581.748 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.907 kb on + strand, within Psest_1476at 1581.908 kb on - strand, within Psest_1476at 1581.908 kb on - strand, within Psest_1476at 1581.908 kb on - strand, within Psest_1476at 1581.908 kb on - strand, within Psest_1476at 1581.921 kb on + strand, within Psest_1476at 1581.921 kb on + strand, within Psest_1476at 1581.921 kb on + strand, within Psest_1476at 1581.921 kb on + strand, within Psest_1476at 1581.922 kb on - strand, within Psest_1476at 1581.922 kb on - strand, within Psest_1476at 1581.922 kb on - strand, within Psest_1476at 1581.922 kb on - strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.988 kb on + strand, within Psest_1476at 1581.989 kb on - strand, within Psest_1476at 1582.082 kb on + strand, within Psest_1476at 1582.082 kb on + strand, within Psest_1476at 1582.083 kb on - strand, within Psest_1476at 1582.083 kb on - strand, within Psest_1476at 1582.083 kb on - strand, within Psest_1476at 1582.086 kb on + strand, within Psest_1476at 1582.276 kb on + strandat 1582.277 kb on - strandat 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.142 kb on + strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.143 kb on - strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.196 kb on + strand, within Psest_1478at 1583.197 kb on - strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.244 kb on + strand, within Psest_1478at 1583.257 kb on + strand, within Psest_1478

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,580,386 + Psest_1475 0.23 +1.7
1,580,387 - Psest_1475 0.23 -0.2
1,580,387 - Psest_1475 0.23 -1.5
1,580,390 + Psest_1475 0.24 +0.4
1,580,390 + Psest_1475 0.24 +0.3
1,580,390 + Psest_1475 0.24 +0.7
1,580,391 - Psest_1475 0.24 -2.2
1,580,391 - Psest_1475 0.24 -0.4
1,580,411 - Psest_1475 0.26 -2.2
1,580,668 + Psest_1475 0.50 +0.8
1,580,702 + Psest_1475 0.53 -2.8
1,581,166 + +1.0
1,581,188 + +0.7
1,581,189 - -3.5
1,581,191 + -0.2
1,581,191 + -0.0
1,581,192 - -0.2
1,581,192 - -2.1
1,581,192 - -1.6
1,581,204 - -1.2
1,581,310 + +0.1
1,581,310 + -1.8
1,581,319 - -2.2
1,581,330 + -1.1
1,581,331 - +0.6
1,581,361 + Psest_1476 0.11 -0.8
1,581,362 - Psest_1476 0.11 +1.4
1,581,512 - Psest_1476 0.24 -1.9
1,581,645 + Psest_1476 0.37 -2.3
1,581,646 - Psest_1476 0.37 -0.0
1,581,665 + Psest_1476 0.38 +0.8
1,581,681 + Psest_1476 0.40 -0.5
1,581,682 - Psest_1476 0.40 +0.9
1,581,748 + Psest_1476 0.46 -1.0
1,581,748 + Psest_1476 0.46 +0.1
1,581,748 + Psest_1476 0.46 -1.6
1,581,907 + Psest_1476 0.60 -2.1
1,581,907 + Psest_1476 0.60 -1.0
1,581,907 + Psest_1476 0.60 -2.5
1,581,907 + Psest_1476 0.60 +0.7
1,581,907 + Psest_1476 0.60 -0.1
1,581,907 + Psest_1476 0.60 -0.9
1,581,907 + Psest_1476 0.60 -2.3
1,581,907 + Psest_1476 0.60 -1.3
1,581,907 + Psest_1476 0.60 -0.2
1,581,907 + Psest_1476 0.60 -1.3
1,581,907 + Psest_1476 0.60 -0.5
1,581,907 + Psest_1476 0.60 +0.2
1,581,907 + Psest_1476 0.60 -2.2
1,581,907 + Psest_1476 0.60 -1.0
1,581,908 - Psest_1476 0.60 -0.2
1,581,908 - Psest_1476 0.60 +0.4
1,581,908 - Psest_1476 0.60 +0.9
1,581,908 - Psest_1476 0.60 -3.6
1,581,921 + Psest_1476 0.62 -0.8
1,581,921 + Psest_1476 0.62 +1.0
1,581,921 + Psest_1476 0.62 -1.1
1,581,921 + Psest_1476 0.62 -1.2
1,581,922 - Psest_1476 0.62 -1.4
1,581,922 - Psest_1476 0.62 +0.3
1,581,922 - Psest_1476 0.62 -1.0
1,581,922 - Psest_1476 0.62 -2.0
1,581,988 + Psest_1476 0.68 +2.0
1,581,988 + Psest_1476 0.68 -1.1
1,581,988 + Psest_1476 0.68 -1.6
1,581,988 + Psest_1476 0.68 +0.2
1,581,988 + Psest_1476 0.68 -2.1
1,581,989 - Psest_1476 0.68 +0.2
1,582,082 + Psest_1476 0.76 -2.2
1,582,082 + Psest_1476 0.76 -1.8
1,582,083 - Psest_1476 0.76 -0.5
1,582,083 - Psest_1476 0.76 -2.0
1,582,083 - Psest_1476 0.76 -1.5
1,582,086 + Psest_1476 0.77 -2.9
1,582,276 + +1.5
1,582,277 - -1.4
1,583,142 + Psest_1478 0.12 +1.0
1,583,142 + Psest_1478 0.12 +0.6
1,583,142 + Psest_1478 0.12 +1.4
1,583,142 + Psest_1478 0.12 -0.9
1,583,142 + Psest_1478 0.12 +1.2
1,583,142 + Psest_1478 0.12 +1.2
1,583,143 - Psest_1478 0.12 +0.0
1,583,143 - Psest_1478 0.12 +0.9
1,583,143 - Psest_1478 0.12 +1.4
1,583,143 - Psest_1478 0.12 -0.0
1,583,143 - Psest_1478 0.12 +0.7
1,583,143 - Psest_1478 0.12 -0.7
1,583,143 - Psest_1478 0.12 -1.2
1,583,143 - Psest_1478 0.12 -0.2
1,583,143 - Psest_1478 0.12 +0.2
1,583,196 + Psest_1478 0.25 +1.6
1,583,196 + Psest_1478 0.25 +0.2
1,583,196 + Psest_1478 0.25 -0.7
1,583,196 + Psest_1478 0.25 -0.2
1,583,197 - Psest_1478 0.25 -0.3
1,583,244 + Psest_1478 0.37 -0.9
1,583,244 + Psest_1478 0.37 -0.3
1,583,244 + Psest_1478 0.37 +0.1
1,583,244 + Psest_1478 0.37 +1.3
1,583,257 + Psest_1478 0.40 +0.2

Or see this region's nucleotide sequence