Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1316

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1314 and Psest_1315 overlap by 14 nucleotidesPsest_1315 and Psest_1316 overlap by 4 nucleotidesPsest_1316 and Psest_1317 are separated by 84 nucleotidesPsest_1317 and Psest_1318 overlap by 4 nucleotides Psest_1314: Psest_1314 - Putative Zn-dependent protease, at 1,414,756 to 1,416,339 _1314 Psest_1315: Psest_1315 - hypothetical protein, at 1,416,326 to 1,416,628 _1315 Psest_1316: Psest_1316 - Predicted transmembrane sensor domain, at 1,416,625 to 1,417,983 _1316 Psest_1317: Psest_1317 - phosphonate ABC transporter, permease protein PhnE, at 1,418,068 to 1,418,835 _1317 Psest_1318: Psest_1318 - ABC-type phosphate/phosphonate transport system, permease component, at 1,418,832 to 1,419,665 _1318 Position (kb) 1416 1417 1418Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1415.658 kb on - strand, within Psest_1314at 1415.658 kb on - strand, within Psest_1314at 1415.658 kb on - strand, within Psest_1314at 1415.658 kb on - strand, within Psest_1314at 1415.896 kb on + strand, within Psest_1314at 1415.896 kb on + strand, within Psest_1314at 1415.925 kb on - strand, within Psest_1314at 1415.937 kb on - strand, within Psest_1314at 1415.963 kb on + strand, within Psest_1314at 1416.044 kb on + strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.045 kb on - strand, within Psest_1314at 1416.061 kb on + strand, within Psest_1314at 1416.062 kb on - strand, within Psest_1314at 1416.116 kb on + strand, within Psest_1314at 1416.116 kb on + strand, within Psest_1314at 1416.116 kb on + strand, within Psest_1314at 1416.116 kb on + strand, within Psest_1314at 1416.161 kb on + strand, within Psest_1314at 1416.162 kb on - strand, within Psest_1314at 1416.162 kb on - strand, within Psest_1314at 1416.189 kb on - strandat 1416.189 kb on - strandat 1416.189 kb on - strandat 1416.289 kb on + strandat 1416.322 kb on + strandat 1416.322 kb on + strandat 1416.322 kb on + strandat 1416.323 kb on - strandat 1416.323 kb on - strandat 1416.323 kb on - strandat 1416.379 kb on + strand, within Psest_1315at 1416.612 kb on + strandat 1416.613 kb on - strandat 1416.613 kb on - strandat 1416.620 kb on + strandat 1416.639 kb on + strandat 1416.646 kb on + strandat 1416.989 kb on + strand, within Psest_1316at 1416.989 kb on + strand, within Psest_1316at 1416.989 kb on + strand, within Psest_1316at 1416.989 kb on + strand, within Psest_1316at 1416.989 kb on + strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1416.990 kb on - strand, within Psest_1316at 1417.002 kb on - strand, within Psest_1316at 1417.037 kb on + strand, within Psest_1316at 1417.038 kb on - strand, within Psest_1316at 1417.038 kb on - strand, within Psest_1316at 1417.138 kb on + strand, within Psest_1316at 1417.219 kb on - strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.424 kb on + strand, within Psest_1316at 1417.425 kb on - strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.433 kb on + strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.434 kb on - strand, within Psest_1316at 1417.436 kb on - strand, within Psest_1316at 1417.436 kb on - strand, within Psest_1316at 1417.466 kb on + strand, within Psest_1316at 1417.466 kb on + strand, within Psest_1316at 1417.589 kb on + strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316at 1417.590 kb on - strand, within Psest_1316at 1417.644 kb on + strand, within Psest_1316at 1417.676 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.682 kb on + strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.683 kb on - strand, within Psest_1316at 1417.716 kb on - strand, within Psest_1316at 1417.723 kb on + strand, within Psest_1316at 1417.723 kb on + strand, within Psest_1316at 1417.724 kb on - strand, within Psest_1316at 1417.724 kb on - strand, within Psest_1316at 1417.724 kb on - strand, within Psest_1316at 1417.754 kb on + strand, within Psest_1316at 1417.754 kb on + strand, within Psest_1316at 1417.844 kb on + strand, within Psest_1316at 1417.956 kb on + strandat 1417.957 kb on - strandat 1418.189 kb on + strand, within Psest_1317at 1418.189 kb on + strand, within Psest_1317at 1418.189 kb on + strandat 1418.189 kb on + strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.190 kb on - strand, within Psest_1317at 1418.265 kb on - strand, within Psest_1317at 1418.265 kb on - strand, within Psest_1317at 1418.274 kb on - strand, within Psest_1317

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,415,658 - Psest_1314 0.57 +0.8
1,415,658 - Psest_1314 0.57 +2.6
1,415,658 - Psest_1314 0.57 +0.7
1,415,658 - Psest_1314 0.57 +2.0
1,415,896 + Psest_1314 0.72 +2.2
1,415,896 + Psest_1314 0.72 +1.2
1,415,925 - Psest_1314 0.74 +1.3
1,415,937 - Psest_1314 0.75 +1.5
1,415,963 + Psest_1314 0.76 +2.4
1,416,044 + Psest_1314 0.81 +1.4
1,416,045 - Psest_1314 0.81 +0.5
1,416,045 - Psest_1314 0.81 +1.9
1,416,045 - Psest_1314 0.81 +1.0
1,416,045 - Psest_1314 0.81 +2.7
1,416,045 - Psest_1314 0.81 +2.1
1,416,045 - Psest_1314 0.81 +2.4
1,416,045 - Psest_1314 0.81 +2.0
1,416,061 + Psest_1314 0.82 +1.4
1,416,062 - Psest_1314 0.82 +1.8
1,416,116 + Psest_1314 0.86 +2.4
1,416,116 + Psest_1314 0.86 +1.8
1,416,116 + Psest_1314 0.86 +1.7
1,416,116 + Psest_1314 0.86 +0.7
1,416,161 + Psest_1314 0.89 +3.0
1,416,162 - Psest_1314 0.89 -0.8
1,416,162 - Psest_1314 0.89 +2.7
1,416,189 - +2.0
1,416,189 - +2.3
1,416,189 - +0.4
1,416,289 + +0.5
1,416,322 + +0.3
1,416,322 + +0.6
1,416,322 + +1.5
1,416,323 - -0.0
1,416,323 - +3.1
1,416,323 - +2.1
1,416,379 + Psest_1315 0.17 +2.0
1,416,612 + +0.0
1,416,613 - +2.9
1,416,613 - +0.4
1,416,620 + +0.5
1,416,639 + +2.0
1,416,646 + +1.7
1,416,989 + Psest_1316 0.27 +1.1
1,416,989 + Psest_1316 0.27 -1.4
1,416,989 + Psest_1316 0.27 +2.5
1,416,989 + Psest_1316 0.27 +1.1
1,416,989 + Psest_1316 0.27 +0.8
1,416,990 - Psest_1316 0.27 +0.5
1,416,990 - Psest_1316 0.27 -0.8
1,416,990 - Psest_1316 0.27 -0.4
1,416,990 - Psest_1316 0.27 -0.4
1,416,990 - Psest_1316 0.27 +0.6
1,417,002 - Psest_1316 0.28 +0.4
1,417,037 + Psest_1316 0.30 +1.1
1,417,038 - Psest_1316 0.30 -0.2
1,417,038 - Psest_1316 0.30 -2.4
1,417,138 + Psest_1316 0.38 +0.7
1,417,219 - Psest_1316 0.44 -0.8
1,417,424 + Psest_1316 0.59 -0.0
1,417,424 + Psest_1316 0.59 +2.0
1,417,424 + Psest_1316 0.59 +3.1
1,417,425 - Psest_1316 0.59 -0.7
1,417,433 + Psest_1316 0.59 +1.8
1,417,433 + Psest_1316 0.59 +2.3
1,417,433 + Psest_1316 0.59 +1.9
1,417,433 + Psest_1316 0.59 +1.0
1,417,434 - Psest_1316 0.60 +1.1
1,417,434 - Psest_1316 0.60 +2.3
1,417,434 - Psest_1316 0.60 +1.5
1,417,434 - Psest_1316 0.60 +1.5
1,417,434 - Psest_1316 0.60 -0.3
1,417,434 - Psest_1316 0.60 +1.0
1,417,436 - Psest_1316 0.60 +0.3
1,417,436 - Psest_1316 0.60 +0.1
1,417,466 + Psest_1316 0.62 +1.8
1,417,466 + Psest_1316 0.62 +1.9
1,417,589 + Psest_1316 0.71 +1.9
1,417,590 - Psest_1316 0.71 +0.6
1,417,590 - Psest_1316 0.71 +1.5
1,417,590 - Psest_1316 0.71 +1.8
1,417,644 + Psest_1316 0.75 +0.8
1,417,676 + Psest_1316 0.77 +2.5
1,417,682 + Psest_1316 0.78 +1.2
1,417,682 + Psest_1316 0.78 +0.1
1,417,682 + Psest_1316 0.78 +0.0
1,417,682 + Psest_1316 0.78 +2.5
1,417,682 + Psest_1316 0.78 +1.8
1,417,682 + Psest_1316 0.78 -2.6
1,417,683 - Psest_1316 0.78 -2.1
1,417,683 - Psest_1316 0.78 +1.5
1,417,683 - Psest_1316 0.78 +1.3
1,417,683 - Psest_1316 0.78 -1.0
1,417,683 - Psest_1316 0.78 +0.8
1,417,683 - Psest_1316 0.78 +0.9
1,417,683 - Psest_1316 0.78 -0.9
1,417,683 - Psest_1316 0.78 -0.7
1,417,716 - Psest_1316 0.80 +1.2
1,417,723 + Psest_1316 0.81 +2.1
1,417,723 + Psest_1316 0.81 -0.2
1,417,724 - Psest_1316 0.81 +0.5
1,417,724 - Psest_1316 0.81 +1.2
1,417,724 - Psest_1316 0.81 -1.9
1,417,754 + Psest_1316 0.83 +1.7
1,417,754 + Psest_1316 0.83 +1.7
1,417,844 + Psest_1316 0.90 +1.7
1,417,956 + +1.4
1,417,957 - +2.9
1,418,189 + Psest_1317 0.16 +1.2
1,418,189 + Psest_1317 0.16 -0.4
1,418,189 + -1.2
1,418,189 + Psest_1317 0.16 -0.4
1,418,190 - Psest_1317 0.16 -0.8
1,418,190 - Psest_1317 0.16 -0.0
1,418,190 - Psest_1317 0.16 -0.2
1,418,190 - Psest_1317 0.16 -1.6
1,418,190 - Psest_1317 0.16 -1.9
1,418,190 - Psest_1317 0.16 -1.6
1,418,265 - Psest_1317 0.26 +0.9
1,418,265 - Psest_1317 0.26 +0.0
1,418,274 - Psest_1317 0.27 -0.6

Or see this region's nucleotide sequence