Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1223

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1222 and Psest_1223 are separated by 163 nucleotidesPsest_1223 and Psest_1224 are separated by 100 nucleotides Psest_1222: Psest_1222 - Nucleoid-associated protein, at 1,329,287 to 1,330,294 _1222 Psest_1223: Psest_1223 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 1,330,458 to 1,331,357 _1223 Psest_1224: Psest_1224 - Arabinose efflux permease, at 1,331,458 to 1,332,669 _1224 Position (kb) 1330 1331 1332Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1329.513 kb on + strand, within Psest_1222at 1329.601 kb on - strand, within Psest_1222at 1329.664 kb on - strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.789 kb on + strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.790 kb on - strand, within Psest_1222at 1329.942 kb on + strand, within Psest_1222at 1329.942 kb on + strand, within Psest_1222at 1330.077 kb on + strand, within Psest_1222at 1330.077 kb on + strand, within Psest_1222at 1330.077 kb on + strand, within Psest_1222at 1330.077 kb on + strand, within Psest_1222at 1330.077 kb on + strand, within Psest_1222at 1330.077 kb on + strand, within Psest_1222at 1330.078 kb on - strand, within Psest_1222at 1330.078 kb on - strand, within Psest_1222at 1330.078 kb on - strand, within Psest_1222at 1330.078 kb on - strand, within Psest_1222at 1330.078 kb on - strand, within Psest_1222at 1330.078 kb on - strand, within Psest_1222at 1330.078 kb on - strand, within Psest_1222at 1330.158 kb on + strand, within Psest_1222at 1330.158 kb on + strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.159 kb on - strand, within Psest_1222at 1330.455 kb on + strandat 1330.455 kb on + strandat 1330.455 kb on + strandat 1330.455 kb on + strandat 1330.455 kb on + strandat 1330.456 kb on - strandat 1330.456 kb on - strandat 1330.575 kb on + strand, within Psest_1223at 1330.576 kb on - strand, within Psest_1223at 1330.654 kb on - strand, within Psest_1223at 1330.732 kb on + strand, within Psest_1223at 1330.732 kb on + strand, within Psest_1223at 1330.733 kb on - strand, within Psest_1223at 1330.872 kb on + strand, within Psest_1223at 1330.872 kb on + strand, within Psest_1223at 1330.873 kb on - strand, within Psest_1223at 1331.151 kb on + strand, within Psest_1223at 1331.159 kb on - strand, within Psest_1223at 1331.355 kb on + strandat 1331.355 kb on + strandat 1331.355 kb on + strandat 1331.415 kb on + strandat 1331.416 kb on - strandat 1331.416 kb on - strandat 1331.424 kb on - strandat 1331.562 kb on + strandat 1331.562 kb on + strandat 1331.562 kb on + strandat 1331.562 kb on + strandat 1331.562 kb on + strandat 1331.563 kb on - strandat 1331.563 kb on - strandat 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.253 kb on + strand, within Psest_1224at 1332.254 kb on - strand, within Psest_1224at 1332.254 kb on - strand, within Psest_1224at 1332.254 kb on - strand, within Psest_1224at 1332.254 kb on - strand, within Psest_1224at 1332.254 kb on - strand, within Psest_1224at 1332.254 kb on - strand, within Psest_1224at 1332.280 kb on + strand, within Psest_1224at 1332.310 kb on + strand, within Psest_1224at 1332.310 kb on + strand, within Psest_1224at 1332.310 kb on + strand, within Psest_1224at 1332.311 kb on - strand, within Psest_1224at 1332.311 kb on - strand, within Psest_1224at 1332.311 kb on - strand, within Psest_1224at 1332.336 kb on + strand, within Psest_1224at 1332.336 kb on + strand, within Psest_1224at 1332.336 kb on + strand, within Psest_1224at 1332.337 kb on - strand, within Psest_1224at 1332.337 kb on - strand, within Psest_1224at 1332.337 kb on - strand, within Psest_1224

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,329,513 + Psest_1222 0.22 +1.3
1,329,601 - Psest_1222 0.31 +0.1
1,329,664 - Psest_1222 0.37 -0.0
1,329,789 + Psest_1222 0.50 +0.9
1,329,789 + Psest_1222 0.50 -0.0
1,329,789 + Psest_1222 0.50 +1.1
1,329,789 + Psest_1222 0.50 -1.3
1,329,789 + Psest_1222 0.50 -1.2
1,329,789 + Psest_1222 0.50 -0.9
1,329,789 + Psest_1222 0.50 +0.7
1,329,789 + Psest_1222 0.50 +1.2
1,329,789 + Psest_1222 0.50 -0.1
1,329,789 + Psest_1222 0.50 +1.0
1,329,789 + Psest_1222 0.50 -1.3
1,329,789 + Psest_1222 0.50 +1.2
1,329,790 - Psest_1222 0.50 -1.7
1,329,790 - Psest_1222 0.50 +1.4
1,329,790 - Psest_1222 0.50 -0.2
1,329,790 - Psest_1222 0.50 -0.8
1,329,790 - Psest_1222 0.50 +0.1
1,329,790 - Psest_1222 0.50 -1.4
1,329,790 - Psest_1222 0.50 +0.5
1,329,790 - Psest_1222 0.50 -2.2
1,329,790 - Psest_1222 0.50 +0.6
1,329,790 - Psest_1222 0.50 -0.6
1,329,790 - Psest_1222 0.50 +1.0
1,329,942 + Psest_1222 0.65 -0.4
1,329,942 + Psest_1222 0.65 +1.2
1,330,077 + Psest_1222 0.78 -0.8
1,330,077 + Psest_1222 0.78 -0.6
1,330,077 + Psest_1222 0.78 +0.4
1,330,077 + Psest_1222 0.78 -0.9
1,330,077 + Psest_1222 0.78 +0.8
1,330,077 + Psest_1222 0.78 -1.5
1,330,078 - Psest_1222 0.78 -0.6
1,330,078 - Psest_1222 0.78 -0.6
1,330,078 - Psest_1222 0.78 +0.4
1,330,078 - Psest_1222 0.78 +1.4
1,330,078 - Psest_1222 0.78 +2.2
1,330,078 - Psest_1222 0.78 -1.0
1,330,078 - Psest_1222 0.78 +3.2
1,330,158 + Psest_1222 0.86 +1.1
1,330,158 + Psest_1222 0.86 +0.9
1,330,159 - Psest_1222 0.87 -1.5
1,330,159 - Psest_1222 0.87 +1.2
1,330,159 - Psest_1222 0.87 -0.5
1,330,159 - Psest_1222 0.87 +1.0
1,330,159 - Psest_1222 0.87 -0.3
1,330,159 - Psest_1222 0.87 +0.5
1,330,159 - Psest_1222 0.87 +1.3
1,330,159 - Psest_1222 0.87 -0.0
1,330,159 - Psest_1222 0.87 +1.0
1,330,159 - Psest_1222 0.87 -1.0
1,330,455 + +0.5
1,330,455 + +0.2
1,330,455 + -1.3
1,330,455 + +0.1
1,330,455 + +0.1
1,330,456 - +0.0
1,330,456 - +0.1
1,330,575 + Psest_1223 0.13 -0.5
1,330,576 - Psest_1223 0.13 +1.3
1,330,654 - Psest_1223 0.22 -0.4
1,330,732 + Psest_1223 0.30 +1.0
1,330,732 + Psest_1223 0.30 +2.4
1,330,733 - Psest_1223 0.31 +2.4
1,330,872 + Psest_1223 0.46 +0.2
1,330,872 + Psest_1223 0.46 +1.7
1,330,873 - Psest_1223 0.46 -1.6
1,331,151 + Psest_1223 0.77 +0.9
1,331,159 - Psest_1223 0.78 -0.1
1,331,355 + +0.1
1,331,355 + +1.4
1,331,355 + +0.3
1,331,415 + +1.0
1,331,416 - -2.4
1,331,416 - -0.9
1,331,424 - -0.6
1,331,562 + -1.2
1,331,562 + -0.0
1,331,562 + +0.6
1,331,562 + -2.5
1,331,562 + +0.6
1,331,563 - -0.2
1,331,563 - -0.3
1,332,253 + Psest_1224 0.66 +0.3
1,332,253 + Psest_1224 0.66 -0.6
1,332,253 + Psest_1224 0.66 -0.6
1,332,253 + Psest_1224 0.66 -0.4
1,332,253 + Psest_1224 0.66 +0.8
1,332,253 + Psest_1224 0.66 +1.0
1,332,253 + Psest_1224 0.66 -0.9
1,332,253 + Psest_1224 0.66 +0.5
1,332,253 + Psest_1224 0.66 +0.3
1,332,253 + Psest_1224 0.66 -2.9
1,332,254 - Psest_1224 0.66 -0.2
1,332,254 - Psest_1224 0.66 -1.2
1,332,254 - Psest_1224 0.66 -2.3
1,332,254 - Psest_1224 0.66 +0.8
1,332,254 - Psest_1224 0.66 +0.9
1,332,254 - Psest_1224 0.66 +0.9
1,332,280 + Psest_1224 0.68 +0.6
1,332,310 + Psest_1224 0.70 +1.8
1,332,310 + Psest_1224 0.70 +2.4
1,332,310 + Psest_1224 0.70 -0.1
1,332,311 - Psest_1224 0.70 +1.2
1,332,311 - Psest_1224 0.70 +1.0
1,332,311 - Psest_1224 0.70 +0.2
1,332,336 + Psest_1224 0.72 +1.1
1,332,336 + Psest_1224 0.72 +0.2
1,332,336 + Psest_1224 0.72 +0.8
1,332,337 - Psest_1224 0.73 +2.7
1,332,337 - Psest_1224 0.73 -0.8
1,332,337 - Psest_1224 0.73 -0.3

Or see this region's nucleotide sequence