Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1146

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1144 and Psest_1145 are separated by 38 nucleotidesPsest_1145 and Psest_1146 are separated by 136 nucleotidesPsest_1146 and Psest_1147 are separated by 75 nucleotidesPsest_1147 and Psest_1148 are separated by 107 nucleotides Psest_1144: Psest_1144 - AmpG-related permease, at 1,241,576 to 1,243,276 _1144 Psest_1145: Psest_1145 - Predicted methylated DNA-protein cysteine methyltransferase, at 1,243,315 to 1,243,674 _1145 Psest_1146: Psest_1146 - Protein of unknown function, DUF481., at 1,243,811 to 1,244,815 _1146 Psest_1147: Psest_1147 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,244,891 to 1,245,649 _1147 Psest_1148: Psest_1148 - Putative heme iron utilization protein, at 1,245,757 to 1,246,464 _1148 Position (kb) 1243 1244 1245Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1242.813 kb on + strand, within Psest_1144at 1242.814 kb on - strand, within Psest_1144at 1242.814 kb on - strand, within Psest_1144at 1242.814 kb on - strand, within Psest_1144at 1243.276 kb on + strandat 1243.276 kb on + strandat 1243.277 kb on - strandat 1243.277 kb on - strandat 1243.277 kb on - strandat 1243.277 kb on - strandat 1243.277 kb on - strandat 1243.277 kb on - strandat 1243.292 kb on - strandat 1243.316 kb on + strandat 1243.499 kb on - strand, within Psest_1145at 1243.568 kb on + strand, within Psest_1145at 1243.602 kb on + strand, within Psest_1145at 1243.602 kb on + strand, within Psest_1145at 1243.611 kb on - strand, within Psest_1145at 1243.611 kb on - strand, within Psest_1145at 1243.748 kb on + strandat 1243.748 kb on + strandat 1243.748 kb on + strandat 1243.749 kb on - strandat 1243.749 kb on - strandat 1243.749 kb on - strandat 1243.749 kb on - strandat 1243.749 kb on - strandat 1243.766 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.810 kb on + strandat 1243.811 kb on - strandat 1243.811 kb on - strandat 1243.811 kb on - strandat 1243.811 kb on - strandat 1243.811 kb on - strandat 1243.811 kb on - strandat 1243.811 kb on - strandat 1243.966 kb on + strand, within Psest_1146at 1243.966 kb on + strand, within Psest_1146at 1243.967 kb on - strand, within Psest_1146at 1244.207 kb on + strand, within Psest_1146at 1244.207 kb on + strand, within Psest_1146at 1244.300 kb on + strand, within Psest_1146at 1244.301 kb on - strand, within Psest_1146at 1244.301 kb on - strand, within Psest_1146at 1244.409 kb on - strand, within Psest_1146at 1244.409 kb on - strand, within Psest_1146at 1244.564 kb on + strand, within Psest_1146at 1244.564 kb on + strand, within Psest_1146at 1244.564 kb on + strand, within Psest_1146at 1244.589 kb on - strand, within Psest_1146at 1244.699 kb on + strand, within Psest_1146at 1244.787 kb on - strandat 1244.838 kb on + strandat 1244.838 kb on + strandat 1244.838 kb on + strandat 1244.838 kb on + strandat 1244.838 kb on + strandat 1244.838 kb on + strandat 1244.839 kb on - strandat 1244.839 kb on - strandat 1244.839 kb on - strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.840 kb on + strandat 1244.841 kb on - strandat 1244.841 kb on - strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.842 kb on + strandat 1244.934 kb on + strandat 1244.934 kb on + strandat 1244.934 kb on + strandat 1244.934 kb on + strandat 1244.934 kb on + strandat 1244.934 kb on + strandat 1244.934 kb on + strandat 1244.934 kb on + strandat 1244.934 kb on + strandat 1244.935 kb on - strandat 1244.935 kb on - strandat 1244.937 kb on + strandat 1244.937 kb on + strandat 1244.938 kb on - strandat 1244.938 kb on - strandat 1244.955 kb on + strandat 1244.955 kb on + strandat 1244.955 kb on + strandat 1244.956 kb on - strandat 1244.956 kb on - strandat 1244.956 kb on - strandat 1244.992 kb on + strand, within Psest_1147at 1245.066 kb on - strand, within Psest_1147at 1245.102 kb on + strand, within Psest_1147at 1245.166 kb on - strand, within Psest_1147at 1245.166 kb on - strand, within Psest_1147at 1245.181 kb on + strand, within Psest_1147at 1245.182 kb on - strand, within Psest_1147at 1245.474 kb on + strand, within Psest_1147at 1245.674 kb on + strandat 1245.674 kb on + strandat 1245.674 kb on + strandat 1245.674 kb on + strandat 1245.674 kb on + strandat 1245.675 kb on - strandat 1245.675 kb on - strandat 1245.675 kb on - strandat 1245.677 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,242,813 + Psest_1144 0.73 +0.4
1,242,814 - Psest_1144 0.73 +0.4
1,242,814 - Psest_1144 0.73 +1.4
1,242,814 - Psest_1144 0.73 +1.4
1,243,276 + -0.2
1,243,276 + +0.4
1,243,277 - +0.2
1,243,277 - -2.1
1,243,277 - -0.4
1,243,277 - +3.4
1,243,277 - +0.4
1,243,277 - +0.2
1,243,292 - +0.1
1,243,316 + +2.4
1,243,499 - Psest_1145 0.51 +1.3
1,243,568 + Psest_1145 0.70 -0.0
1,243,602 + Psest_1145 0.80 -0.1
1,243,602 + Psest_1145 0.80 -3.0
1,243,611 - Psest_1145 0.82 -0.3
1,243,611 - Psest_1145 0.82 -0.1
1,243,748 + +3.3
1,243,748 + +1.9
1,243,748 + +1.5
1,243,749 - +1.8
1,243,749 - +1.2
1,243,749 - +2.5
1,243,749 - +1.3
1,243,749 - +2.5
1,243,766 + -0.7
1,243,810 + +3.1
1,243,810 + +0.7
1,243,810 + +1.2
1,243,810 + +0.6
1,243,810 + +3.1
1,243,810 + +1.5
1,243,810 + +1.2
1,243,810 + +2.0
1,243,810 + +0.3
1,243,810 + -0.3
1,243,811 - +2.2
1,243,811 - +0.7
1,243,811 - +2.4
1,243,811 - +2.9
1,243,811 - +1.8
1,243,811 - +3.7
1,243,811 - +1.8
1,243,966 + Psest_1146 0.15 +0.4
1,243,966 + Psest_1146 0.15 +2.5
1,243,967 - Psest_1146 0.16 +3.0
1,244,207 + Psest_1146 0.39 +1.6
1,244,207 + Psest_1146 0.39 +1.8
1,244,300 + Psest_1146 0.49 +3.1
1,244,301 - Psest_1146 0.49 +2.3
1,244,301 - Psest_1146 0.49 +2.5
1,244,409 - Psest_1146 0.60 +1.7
1,244,409 - Psest_1146 0.60 +2.0
1,244,564 + Psest_1146 0.75 +1.4
1,244,564 + Psest_1146 0.75 +2.2
1,244,564 + Psest_1146 0.75 +0.8
1,244,589 - Psest_1146 0.77 +2.3
1,244,699 + Psest_1146 0.88 +1.3
1,244,787 - +1.8
1,244,838 + -1.1
1,244,838 + +0.1
1,244,838 + +2.4
1,244,838 + -1.0
1,244,838 + -0.3
1,244,838 + +0.7
1,244,839 - +2.2
1,244,839 - +0.8
1,244,839 - +1.5
1,244,840 + -0.3
1,244,840 + -0.1
1,244,840 + +1.0
1,244,840 + +1.8
1,244,840 + -0.8
1,244,840 + +0.7
1,244,840 + +0.7
1,244,840 + -0.2
1,244,840 + -2.1
1,244,840 + +1.1
1,244,840 + +0.2
1,244,840 + -2.4
1,244,840 + +1.5
1,244,840 + -0.2
1,244,841 - -1.4
1,244,841 - +1.2
1,244,842 + -0.0
1,244,842 + -0.4
1,244,842 + -0.5
1,244,842 + +0.1
1,244,842 + -1.5
1,244,842 + -0.3
1,244,842 + -1.2
1,244,842 + +0.2
1,244,842 + -0.7
1,244,842 + +0.3
1,244,842 + +0.4
1,244,842 + +0.4
1,244,842 + -0.8
1,244,842 + +0.9
1,244,842 + +1.4
1,244,934 + +3.1
1,244,934 + -0.6
1,244,934 + -0.6
1,244,934 + +1.3
1,244,934 + +0.1
1,244,934 + +1.6
1,244,934 + -2.9
1,244,934 + +0.1
1,244,934 + +0.1
1,244,935 - +1.4
1,244,935 - -0.0
1,244,937 + +0.1
1,244,937 + +1.1
1,244,938 - +0.8
1,244,938 - -0.3
1,244,955 + +0.7
1,244,955 + -1.9
1,244,955 + +0.4
1,244,956 - -0.9
1,244,956 - -1.1
1,244,956 - +0.7
1,244,992 + Psest_1147 0.13 -1.1
1,245,066 - Psest_1147 0.23 +0.5
1,245,102 + Psest_1147 0.28 +1.8
1,245,166 - Psest_1147 0.36 +1.1
1,245,166 - Psest_1147 0.36 -0.5
1,245,181 + Psest_1147 0.38 +1.6
1,245,182 - Psest_1147 0.38 +0.0
1,245,474 + Psest_1147 0.77 -1.6
1,245,674 + +0.5
1,245,674 + +1.5
1,245,674 + -2.1
1,245,674 + +0.8
1,245,674 + +0.4
1,245,675 - -0.0
1,245,675 - +1.0
1,245,675 - -0.0
1,245,677 + -0.0

Or see this region's nucleotide sequence