Experiment: Bacitracin 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1102 and Psest_1103 are separated by 194 nucleotides Psest_1103 and Psest_1104 are separated by 25 nucleotides Psest_1104 and Psest_1105 are separated by 33 nucleotides
Psest_1102: Psest_1102 - Integrase, at 1,198,005 to 1,199,216
_1102
Psest_1103: Psest_1103 - GTP-binding protein YchF, at 1,199,411 to 1,200,511
_1103
Psest_1104: Psest_1104 - peptidyl-tRNA hydrolase, at 1,200,537 to 1,201,121
_1104
Psest_1105: Psest_1105 - ribosomal protein L25, Ctc-form, at 1,201,155 to 1,201,772
_1105
Position (kb)
1199
1200
1201 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1198.602 kb on + strand, within Psest_1102 at 1198.603 kb on - strand, within Psest_1102 at 1198.603 kb on - strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.798 kb on + strand, within Psest_1102 at 1198.799 kb on - strand, within Psest_1102 at 1198.799 kb on - strand, within Psest_1102 at 1198.799 kb on - strand, within Psest_1102 at 1198.799 kb on - strand, within Psest_1102 at 1198.799 kb on - strand, within Psest_1102 at 1198.799 kb on - strand, within Psest_1102 at 1198.799 kb on - strand, within Psest_1102 at 1198.799 kb on - strand, within Psest_1102 at 1198.867 kb on + strand, within Psest_1102 at 1198.867 kb on + strand, within Psest_1102 at 1198.868 kb on - strand, within Psest_1102 at 1198.868 kb on - strand, within Psest_1102 at 1198.944 kb on + strand, within Psest_1102 at 1199.012 kb on + strand, within Psest_1102 at 1199.031 kb on + strand, within Psest_1102 at 1199.031 kb on + strand, within Psest_1102 at 1199.031 kb on + strand, within Psest_1102 at 1199.031 kb on + strand, within Psest_1102 at 1199.031 kb on + strand, within Psest_1102 at 1199.032 kb on - strand, within Psest_1102 at 1199.032 kb on - strand, within Psest_1102 at 1199.084 kb on - strand, within Psest_1102 at 1199.203 kb on - strand at 1199.203 kb on - strand at 1199.242 kb on + strand at 1199.309 kb on - strand at 1199.309 kb on - strand at 1199.457 kb on + strand at 1199.457 kb on + strand at 1199.659 kb on - strand, within Psest_1103 at 1199.895 kb on + strand, within Psest_1103 at 1199.895 kb on + strand, within Psest_1103 at 1199.896 kb on - strand, within Psest_1103 at 1199.896 kb on - strand, within Psest_1103 at 1199.896 kb on - strand, within Psest_1103 at 1199.896 kb on - strand, within Psest_1103 at 1200.532 kb on - strand at 1200.532 kb on - strand at 1200.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml remove 1,198,602 + Psest_1102 0.49 +1.3 1,198,603 - Psest_1102 0.49 -0.1 1,198,603 - Psest_1102 0.49 +0.4 1,198,798 + Psest_1102 0.65 -0.5 1,198,798 + Psest_1102 0.65 -1.9 1,198,798 + Psest_1102 0.65 -0.2 1,198,798 + Psest_1102 0.65 +3.1 1,198,798 + Psest_1102 0.65 -0.8 1,198,798 + Psest_1102 0.65 -2.1 1,198,798 + Psest_1102 0.65 +0.5 1,198,798 + Psest_1102 0.65 -0.6 1,198,798 + Psest_1102 0.65 -0.1 1,198,798 + Psest_1102 0.65 -0.5 1,198,798 + Psest_1102 0.65 +0.3 1,198,798 + Psest_1102 0.65 +0.8 1,198,798 + Psest_1102 0.65 +1.9 1,198,799 - Psest_1102 0.66 -0.5 1,198,799 - Psest_1102 0.66 +1.5 1,198,799 - Psest_1102 0.66 -0.1 1,198,799 - Psest_1102 0.66 +0.2 1,198,799 - Psest_1102 0.66 +0.1 1,198,799 - Psest_1102 0.66 +1.0 1,198,799 - Psest_1102 0.66 -2.9 1,198,799 - Psest_1102 0.66 -1.7 1,198,867 + Psest_1102 0.71 +0.9 1,198,867 + Psest_1102 0.71 -1.3 1,198,868 - Psest_1102 0.71 +0.0 1,198,868 - Psest_1102 0.71 +1.4 1,198,944 + Psest_1102 0.77 +0.0 1,199,012 + Psest_1102 0.83 +1.0 1,199,031 + Psest_1102 0.85 +0.6 1,199,031 + Psest_1102 0.85 -0.2 1,199,031 + Psest_1102 0.85 -0.7 1,199,031 + Psest_1102 0.85 +0.6 1,199,031 + Psest_1102 0.85 -0.1 1,199,032 - Psest_1102 0.85 -0.0 1,199,032 - Psest_1102 0.85 +1.5 1,199,084 - Psest_1102 0.89 -1.8 1,199,203 - +0.7 1,199,203 - +2.4 1,199,242 + +0.2 1,199,309 - -1.4 1,199,309 - +0.7 1,199,457 + -1.5 1,199,457 + +0.9 1,199,659 - Psest_1103 0.23 +1.0 1,199,895 + Psest_1103 0.44 +1.7 1,199,895 + Psest_1103 0.44 -0.2 1,199,896 - Psest_1103 0.44 +0.3 1,199,896 - Psest_1103 0.44 +3.5 1,199,896 - Psest_1103 0.44 +1.3 1,199,896 - Psest_1103 0.44 +1.3 1,200,532 - -0.5 1,200,532 - -0.2 1,200,532 - +0.1
Or see this region's nucleotide sequence