Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1050

Experiment: Bacitracin 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1048 and Psest_1049 overlap by 14 nucleotidesPsest_1049 and Psest_1050 overlap by 8 nucleotidesPsest_1050 and Psest_1051 are separated by 106 nucleotides Psest_1048: Psest_1048 - Uncharacterized paraquat-inducible protein A, at 1,133,715 to 1,134,371 _1048 Psest_1049: Psest_1049 - Uncharacterized paraquat-inducible protein A, at 1,134,358 to 1,134,981 _1049 Psest_1050: Psest_1050 - Paraquat-inducible protein B, at 1,134,974 to 1,137,283 _1050 Psest_1051: Psest_1051 - hypothetical protein, at 1,137,390 to 1,140,224 _1051 Position (kb) 1134 1135 1136 1137 1138Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1133.984 kb on + strand, within Psest_1048at 1134.012 kb on + strand, within Psest_1048at 1134.012 kb on + strand, within Psest_1048at 1134.013 kb on - strand, within Psest_1048at 1134.014 kb on + strand, within Psest_1048at 1134.046 kb on + strand, within Psest_1048at 1134.046 kb on + strand, within Psest_1048at 1134.046 kb on + strand, within Psest_1048at 1134.159 kb on + strand, within Psest_1048at 1134.159 kb on + strand, within Psest_1048at 1134.160 kb on - strand, within Psest_1048at 1134.160 kb on - strand, within Psest_1048at 1134.169 kb on + strand, within Psest_1048at 1134.169 kb on + strand, within Psest_1048at 1134.169 kb on + strand, within Psest_1048at 1134.169 kb on + strand, within Psest_1048at 1134.169 kb on + strand, within Psest_1048at 1134.169 kb on + strand, within Psest_1048at 1134.169 kb on + strand, within Psest_1048at 1134.170 kb on - strand, within Psest_1048at 1134.170 kb on - strand, within Psest_1048at 1134.170 kb on - strand, within Psest_1048at 1134.195 kb on + strand, within Psest_1048at 1134.195 kb on + strand, within Psest_1048at 1134.195 kb on + strand, within Psest_1048at 1134.196 kb on - strand, within Psest_1048at 1134.196 kb on - strand, within Psest_1048at 1134.196 kb on - strand, within Psest_1048at 1134.207 kb on - strand, within Psest_1048at 1134.215 kb on - strand, within Psest_1048at 1134.248 kb on + strand, within Psest_1048at 1134.249 kb on - strand, within Psest_1048at 1134.258 kb on - strand, within Psest_1048at 1134.304 kb on + strand, within Psest_1048at 1134.468 kb on + strand, within Psest_1049at 1134.484 kb on - strand, within Psest_1049at 1134.530 kb on - strand, within Psest_1049at 1134.530 kb on - strand, within Psest_1049at 1134.881 kb on + strand, within Psest_1049at 1134.881 kb on + strand, within Psest_1049at 1134.882 kb on - strand, within Psest_1049at 1135.082 kb on + strandat 1135.082 kb on + strandat 1135.083 kb on - strandat 1135.083 kb on - strandat 1135.160 kb on + strandat 1135.160 kb on + strandat 1135.160 kb on + strandat 1135.160 kb on + strandat 1135.160 kb on + strandat 1135.161 kb on - strandat 1135.161 kb on - strandat 1135.161 kb on - strandat 1135.265 kb on + strand, within Psest_1050at 1135.265 kb on + strand, within Psest_1050at 1135.266 kb on - strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.355 kb on + strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.356 kb on - strand, within Psest_1050at 1135.357 kb on + strand, within Psest_1050at 1135.358 kb on - strand, within Psest_1050at 1135.538 kb on + strand, within Psest_1050at 1135.538 kb on + strand, within Psest_1050at 1135.538 kb on + strand, within Psest_1050at 1135.538 kb on + strand, within Psest_1050at 1135.538 kb on + strand, within Psest_1050at 1135.538 kb on + strand, within Psest_1050at 1135.538 kb on + strand, within Psest_1050at 1135.539 kb on - strand, within Psest_1050at 1135.539 kb on - strand, within Psest_1050at 1135.539 kb on - strand, within Psest_1050at 1135.539 kb on - strand, within Psest_1050at 1135.539 kb on - strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.580 kb on + strand, within Psest_1050at 1135.581 kb on - strand, within Psest_1050at 1135.581 kb on - strand, within Psest_1050at 1135.581 kb on - strand, within Psest_1050at 1135.581 kb on - strand, within Psest_1050at 1135.581 kb on - strand, within Psest_1050at 1135.583 kb on - strand, within Psest_1050at 1135.785 kb on - strand, within Psest_1050at 1135.877 kb on + strand, within Psest_1050at 1135.877 kb on + strand, within Psest_1050at 1135.878 kb on - strand, within Psest_1050at 1135.977 kb on - strand, within Psest_1050at 1135.977 kb on - strand, within Psest_1050at 1136.066 kb on + strand, within Psest_1050at 1136.066 kb on + strand, within Psest_1050at 1136.066 kb on + strand, within Psest_1050at 1136.255 kb on + strand, within Psest_1050at 1136.299 kb on + strand, within Psest_1050at 1136.313 kb on - strand, within Psest_1050at 1136.388 kb on + strand, within Psest_1050at 1136.589 kb on - strand, within Psest_1050at 1136.589 kb on - strand, within Psest_1050at 1136.649 kb on + strand, within Psest_1050at 1136.649 kb on + strand, within Psest_1050at 1136.649 kb on + strand, within Psest_1050at 1136.649 kb on + strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.778 kb on - strand, within Psest_1050at 1136.927 kb on + strand, within Psest_1050at 1136.928 kb on - strand, within Psest_1050at 1136.928 kb on - strand, within Psest_1050at 1137.302 kb on + strandat 1137.302 kb on + strandat 1137.302 kb on + strandat 1137.329 kb on - strandat 1137.461 kb on - strandat 1137.461 kb on - strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.643 kb on + strandat 1137.643 kb on + strandat 1137.644 kb on - strandat 1137.644 kb on - strandat 1137.644 kb on - strandat 1137.644 kb on - strandat 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.868 kb on + strand, within Psest_1051at 1137.869 kb on - strand, within Psest_1051at 1137.949 kb on + strand, within Psest_1051at 1138.276 kb on + strand, within Psest_1051at 1138.277 kb on - strand, within Psest_1051at 1138.277 kb on - strand, within Psest_1051at 1138.277 kb on - strand, within Psest_1051

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.25 mg/ml
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1,133,984 + Psest_1048 0.41 +1.2
1,134,012 + Psest_1048 0.45 +0.4
1,134,012 + Psest_1048 0.45 +2.3
1,134,013 - Psest_1048 0.45 +1.9
1,134,014 + Psest_1048 0.46 -0.6
1,134,046 + Psest_1048 0.50 +2.4
1,134,046 + Psest_1048 0.50 +1.4
1,134,046 + Psest_1048 0.50 +1.7
1,134,159 + Psest_1048 0.68 +1.1
1,134,159 + Psest_1048 0.68 +3.3
1,134,160 - Psest_1048 0.68 +4.9
1,134,160 - Psest_1048 0.68 +2.3
1,134,169 + Psest_1048 0.69 +1.4
1,134,169 + Psest_1048 0.69 +0.1
1,134,169 + Psest_1048 0.69 +1.5
1,134,169 + Psest_1048 0.69 +2.7
1,134,169 + Psest_1048 0.69 +1.5
1,134,169 + Psest_1048 0.69 +0.9
1,134,169 + Psest_1048 0.69 -1.1
1,134,170 - Psest_1048 0.69 +2.3
1,134,170 - Psest_1048 0.69 +2.2
1,134,170 - Psest_1048 0.69 +1.6
1,134,195 + Psest_1048 0.73 +2.5
1,134,195 + Psest_1048 0.73 +1.2
1,134,195 + Psest_1048 0.73 +0.0
1,134,196 - Psest_1048 0.73 +0.4
1,134,196 - Psest_1048 0.73 +1.8
1,134,196 - Psest_1048 0.73 +2.2
1,134,207 - Psest_1048 0.75 +2.8
1,134,215 - Psest_1048 0.76 -1.6
1,134,248 + Psest_1048 0.81 +2.7
1,134,249 - Psest_1048 0.81 +2.2
1,134,258 - Psest_1048 0.83 +1.5
1,134,304 + Psest_1048 0.90 +0.0
1,134,468 + Psest_1049 0.18 +2.1
1,134,484 - Psest_1049 0.20 -1.8
1,134,530 - Psest_1049 0.28 +3.8
1,134,530 - Psest_1049 0.28 +1.9
1,134,881 + Psest_1049 0.84 +2.2
1,134,881 + Psest_1049 0.84 +2.8
1,134,882 - Psest_1049 0.84 +2.0
1,135,082 + +0.7
1,135,082 + +2.5
1,135,083 - +1.6
1,135,083 - +1.6
1,135,160 + -0.4
1,135,160 + +3.8
1,135,160 + +2.2
1,135,160 + -1.6
1,135,160 + +1.8
1,135,161 - +3.9
1,135,161 - +1.2
1,135,161 - +2.4
1,135,265 + Psest_1050 0.13 +2.5
1,135,265 + Psest_1050 0.13 +1.5
1,135,266 - Psest_1050 0.13 +1.6
1,135,355 + Psest_1050 0.16 +2.3
1,135,355 + Psest_1050 0.16 +1.8
1,135,355 + Psest_1050 0.16 +3.3
1,135,355 + Psest_1050 0.16 +1.7
1,135,355 + Psest_1050 0.16 +1.8
1,135,355 + Psest_1050 0.16 +2.3
1,135,355 + Psest_1050 0.16 -1.2
1,135,355 + Psest_1050 0.16 +2.5
1,135,355 + Psest_1050 0.16 +3.4
1,135,355 + Psest_1050 0.16 +0.0
1,135,355 + Psest_1050 0.16 +4.9
1,135,355 + Psest_1050 0.16 +1.4
1,135,355 + Psest_1050 0.16 +2.0
1,135,355 + Psest_1050 0.16 +0.1
1,135,355 + Psest_1050 0.16 +1.7
1,135,356 - Psest_1050 0.17 +3.7
1,135,356 - Psest_1050 0.17 +2.7
1,135,356 - Psest_1050 0.17 +2.5
1,135,356 - Psest_1050 0.17 +1.9
1,135,356 - Psest_1050 0.17 +1.6
1,135,356 - Psest_1050 0.17 +3.5
1,135,356 - Psest_1050 0.17 +2.0
1,135,356 - Psest_1050 0.17 +1.3
1,135,356 - Psest_1050 0.17 +3.6
1,135,356 - Psest_1050 0.17 +2.4
1,135,356 - Psest_1050 0.17 +2.3
1,135,356 - Psest_1050 0.17 +2.5
1,135,356 - Psest_1050 0.17 +0.2
1,135,356 - Psest_1050 0.17 +2.4
1,135,356 - Psest_1050 0.17 +1.9
1,135,356 - Psest_1050 0.17 +3.1
1,135,356 - Psest_1050 0.17 +1.6
1,135,357 + Psest_1050 0.17 +2.2
1,135,358 - Psest_1050 0.17 +0.1
1,135,538 + Psest_1050 0.24 +1.1
1,135,538 + Psest_1050 0.24 +1.7
1,135,538 + Psest_1050 0.24 +2.2
1,135,538 + Psest_1050 0.24 +1.9
1,135,538 + Psest_1050 0.24 +1.6
1,135,538 + Psest_1050 0.24 +5.2
1,135,538 + Psest_1050 0.24 +2.9
1,135,539 - Psest_1050 0.24 +2.5
1,135,539 - Psest_1050 0.24 +3.6
1,135,539 - Psest_1050 0.24 +2.5
1,135,539 - Psest_1050 0.24 -2.1
1,135,539 - Psest_1050 0.24 +0.8
1,135,580 + Psest_1050 0.26 +1.6
1,135,580 + Psest_1050 0.26 +2.5
1,135,580 + Psest_1050 0.26 +2.6
1,135,580 + Psest_1050 0.26 +4.9
1,135,580 + Psest_1050 0.26 +2.3
1,135,580 + Psest_1050 0.26 +2.1
1,135,580 + Psest_1050 0.26 +2.2
1,135,580 + Psest_1050 0.26 +2.0
1,135,580 + Psest_1050 0.26 +4.1
1,135,580 + Psest_1050 0.26 +1.4
1,135,580 + Psest_1050 0.26 +2.6
1,135,580 + Psest_1050 0.26 +1.7
1,135,581 - Psest_1050 0.26 -1.3
1,135,581 - Psest_1050 0.26 +0.0
1,135,581 - Psest_1050 0.26 +2.2
1,135,581 - Psest_1050 0.26 +1.7
1,135,581 - Psest_1050 0.26 +0.4
1,135,583 - Psest_1050 0.26 +1.2
1,135,785 - Psest_1050 0.35 +4.6
1,135,877 + Psest_1050 0.39 +0.3
1,135,877 + Psest_1050 0.39 +2.1
1,135,878 - Psest_1050 0.39 +2.6
1,135,977 - Psest_1050 0.43 +2.6
1,135,977 - Psest_1050 0.43 +1.2
1,136,066 + Psest_1050 0.47 +3.5
1,136,066 + Psest_1050 0.47 +2.7
1,136,066 + Psest_1050 0.47 +0.2
1,136,255 + Psest_1050 0.55 +3.7
1,136,299 + Psest_1050 0.57 +0.9
1,136,313 - Psest_1050 0.58 +1.5
1,136,388 + Psest_1050 0.61 +1.0
1,136,589 - Psest_1050 0.70 +4.5
1,136,589 - Psest_1050 0.70 +1.5
1,136,649 + Psest_1050 0.73 +0.4
1,136,649 + Psest_1050 0.73 +2.3
1,136,649 + Psest_1050 0.73 +2.5
1,136,649 + Psest_1050 0.73 +0.8
1,136,650 - Psest_1050 0.73 +1.4
1,136,650 - Psest_1050 0.73 +1.5
1,136,650 - Psest_1050 0.73 +2.0
1,136,650 - Psest_1050 0.73 +0.3
1,136,650 - Psest_1050 0.73 +0.8
1,136,650 - Psest_1050 0.73 +1.7
1,136,778 - Psest_1050 0.78 +1.1
1,136,927 + Psest_1050 0.85 +1.8
1,136,928 - Psest_1050 0.85 +2.4
1,136,928 - Psest_1050 0.85 +2.4
1,137,302 + -1.6
1,137,302 + -0.0
1,137,302 + -2.6
1,137,329 - +0.4
1,137,461 - -1.0
1,137,461 - +0.8
1,137,484 + -0.9
1,137,484 + -1.3
1,137,484 + -0.6
1,137,484 + -2.0
1,137,484 + -3.0
1,137,484 + -1.1
1,137,484 + +0.4
1,137,484 + -2.2
1,137,484 + +0.6
1,137,485 - -0.3
1,137,485 - -0.6
1,137,485 - -2.7
1,137,485 - -2.3
1,137,485 - -0.5
1,137,485 - -0.2
1,137,643 + -0.6
1,137,643 + -2.0
1,137,644 - -0.2
1,137,644 - -1.2
1,137,644 - -0.5
1,137,644 - -0.8
1,137,700 + Psest_1051 0.11 -2.8
1,137,700 + Psest_1051 0.11 -1.2
1,137,700 + Psest_1051 0.11 -4.3
1,137,700 + Psest_1051 0.11 -0.8
1,137,700 + Psest_1051 0.11 -1.9
1,137,700 + Psest_1051 0.11 -2.7
1,137,700 + Psest_1051 0.11 -2.7
1,137,700 + Psest_1051 0.11 -1.2
1,137,700 + Psest_1051 0.11 -1.6
1,137,700 + Psest_1051 0.11 -1.6
1,137,700 + Psest_1051 0.11 +0.7
1,137,700 + Psest_1051 0.11 -0.5
1,137,701 - Psest_1051 0.11 -1.3
1,137,701 - Psest_1051 0.11 +1.4
1,137,701 - Psest_1051 0.11 +0.5
1,137,701 - Psest_1051 0.11 -1.6
1,137,701 - Psest_1051 0.11 -0.8
1,137,701 - Psest_1051 0.11 -1.3
1,137,701 - Psest_1051 0.11 -1.3
1,137,701 - Psest_1051 0.11 -1.8
1,137,701 - Psest_1051 0.11 -1.2
1,137,701 - Psest_1051 0.11 -3.0
1,137,701 - Psest_1051 0.11 +0.4
1,137,701 - Psest_1051 0.11 -1.7
1,137,701 - Psest_1051 0.11 -1.6
1,137,701 - Psest_1051 0.11 -2.7
1,137,701 - Psest_1051 0.11 -2.6
1,137,701 - Psest_1051 0.11 +0.4
1,137,701 - Psest_1051 0.11 -2.4
1,137,701 - Psest_1051 0.11 -3.0
1,137,868 + Psest_1051 0.17 -3.3
1,137,869 - Psest_1051 0.17 -2.1
1,137,949 + Psest_1051 0.20 -2.0
1,138,276 + Psest_1051 0.31 -2.6
1,138,277 - Psest_1051 0.31 -3.4
1,138,277 - Psest_1051 0.31 +0.1
1,138,277 - Psest_1051 0.31 +0.4

Or see this region's nucleotide sequence