Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0805

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0804 and Psest_0805 are separated by 23 nucleotidesPsest_0805 and Psest_0806 overlap by 4 nucleotides Psest_0804: Psest_0804 - hypothetical protein, at 878,428 to 881,445 _0804 Psest_0805: Psest_0805 - hypothetical protein, at 881,469 to 881,942 _0805 Psest_0806: Psest_0806 - prepilin-type N-terminal cleavage/methylation domain, at 881,939 to 883,054 _0806 Position (kb) 881 882Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 880.577 kb on + strand, within Psest_0804at 880.578 kb on - strand, within Psest_0804at 880.578 kb on - strand, within Psest_0804at 880.578 kb on - strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.667 kb on + strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.668 kb on - strand, within Psest_0804at 880.755 kb on + strand, within Psest_0804at 880.755 kb on + strand, within Psest_0804at 880.755 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.844 kb on + strand, within Psest_0804at 880.845 kb on - strand, within Psest_0804at 880.845 kb on - strand, within Psest_0804at 880.845 kb on - strand, within Psest_0804at 880.845 kb on - strand, within Psest_0804at 880.853 kb on + strand, within Psest_0804at 880.853 kb on + strand, within Psest_0804at 880.853 kb on + strand, within Psest_0804at 880.853 kb on + strand, within Psest_0804at 880.853 kb on + strand, within Psest_0804at 880.853 kb on + strand, within Psest_0804at 880.853 kb on + strand, within Psest_0804at 880.853 kb on + strand, within Psest_0804at 880.854 kb on - strand, within Psest_0804at 880.854 kb on - strand, within Psest_0804at 880.854 kb on - strand, within Psest_0804at 880.854 kb on - strand, within Psest_0804at 880.854 kb on - strand, within Psest_0804at 880.889 kb on + strand, within Psest_0804at 880.889 kb on + strand, within Psest_0804at 880.889 kb on + strand, within Psest_0804at 880.890 kb on - strand, within Psest_0804at 880.890 kb on - strand, within Psest_0804at 880.934 kb on + strand, within Psest_0804at 880.934 kb on + strand, within Psest_0804at 880.934 kb on + strand, within Psest_0804at 880.934 kb on + strand, within Psest_0804at 880.935 kb on - strand, within Psest_0804at 880.935 kb on - strand, within Psest_0804at 880.935 kb on - strand, within Psest_0804at 880.935 kb on - strand, within Psest_0804at 880.935 kb on - strand, within Psest_0804at 881.027 kb on + strand, within Psest_0804at 881.027 kb on + strand, within Psest_0804at 881.027 kb on + strand, within Psest_0804at 881.027 kb on + strand, within Psest_0804at 881.033 kb on + strand, within Psest_0804at 881.033 kb on + strand, within Psest_0804at 881.033 kb on + strand, within Psest_0804at 881.033 kb on + strand, within Psest_0804at 881.162 kb on + strandat 881.162 kb on + strandat 881.162 kb on + strandat 881.163 kb on - strandat 881.163 kb on - strandat 881.203 kb on - strandat 881.304 kb on + strandat 881.305 kb on - strandat 881.305 kb on - strandat 881.451 kb on + strandat 881.451 kb on + strandat 881.624 kb on + strand, within Psest_0805at 881.682 kb on + strand, within Psest_0805at 881.689 kb on + strand, within Psest_0805at 881.689 kb on + strand, within Psest_0805at 881.689 kb on + strand, within Psest_0805at 881.689 kb on + strand, within Psest_0805at 881.991 kb on + strandat 881.992 kb on - strandat 881.992 kb on - strandat 882.048 kb on + strandat 882.048 kb on + strandat 882.048 kb on + strandat 882.048 kb on + strandat 882.048 kb on + strandat 882.049 kb on - strandat 882.049 kb on - strandat 882.049 kb on - strandat 882.049 kb on - strandat 882.244 kb on - strand, within Psest_0806at 882.308 kb on - strand, within Psest_0806at 882.308 kb on - strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.423 kb on + strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.424 kb on - strand, within Psest_0806at 882.426 kb on + strand, within Psest_0806at 882.426 kb on + strand, within Psest_0806at 882.510 kb on + strand, within Psest_0806at 882.546 kb on + strand, within Psest_0806at 882.546 kb on + strand, within Psest_0806at 882.547 kb on - strand, within Psest_0806at 882.611 kb on + strand, within Psest_0806at 882.650 kb on + strand, within Psest_0806at 882.672 kb on - strand, within Psest_0806at 882.681 kb on + strand, within Psest_0806at 882.717 kb on + strand, within Psest_0806at 882.718 kb on - strand, within Psest_0806at 882.736 kb on + strand, within Psest_0806at 882.737 kb on - strand, within Psest_0806at 882.737 kb on - strand, within Psest_0806at 882.738 kb on + strand, within Psest_0806at 882.739 kb on - strand, within Psest_0806at 882.758 kb on + strand, within Psest_0806at 882.792 kb on + strand, within Psest_0806at 882.792 kb on + strand, within Psest_0806at 882.940 kb on - strand, within Psest_0806

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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880,577 + Psest_0804 0.71 -1.5
880,578 - Psest_0804 0.71 -0.4
880,578 - Psest_0804 0.71 +0.3
880,578 - Psest_0804 0.71 +0.4
880,667 + Psest_0804 0.74 +1.6
880,667 + Psest_0804 0.74 -0.7
880,667 + Psest_0804 0.74 +0.2
880,667 + Psest_0804 0.74 +0.4
880,667 + Psest_0804 0.74 +0.4
880,667 + Psest_0804 0.74 -0.2
880,667 + Psest_0804 0.74 -2.0
880,667 + Psest_0804 0.74 -2.1
880,667 + Psest_0804 0.74 -0.3
880,667 + Psest_0804 0.74 -0.5
880,668 - Psest_0804 0.74 -1.9
880,668 - Psest_0804 0.74 -0.6
880,668 - Psest_0804 0.74 -1.0
880,668 - Psest_0804 0.74 +1.0
880,668 - Psest_0804 0.74 -0.9
880,668 - Psest_0804 0.74 -0.6
880,668 - Psest_0804 0.74 -0.5
880,668 - Psest_0804 0.74 +1.5
880,668 - Psest_0804 0.74 -1.2
880,668 - Psest_0804 0.74 -0.4
880,668 - Psest_0804 0.74 +1.3
880,755 + Psest_0804 0.77 -0.1
880,755 + Psest_0804 0.77 +0.5
880,755 + Psest_0804 0.77 -0.7
880,844 + Psest_0804 0.80 -1.6
880,844 + Psest_0804 0.80 -0.7
880,844 + Psest_0804 0.80 -0.4
880,844 + Psest_0804 0.80 +0.6
880,844 + Psest_0804 0.80 +0.2
880,844 + Psest_0804 0.80 -1.3
880,844 + Psest_0804 0.80 -1.1
880,844 + Psest_0804 0.80 -1.2
880,844 + Psest_0804 0.80 +0.9
880,844 + Psest_0804 0.80 +0.8
880,844 + Psest_0804 0.80 +0.3
880,844 + Psest_0804 0.80 +0.1
880,844 + Psest_0804 0.80 +0.6
880,844 + Psest_0804 0.80 +0.8
880,844 + Psest_0804 0.80 -0.9
880,845 - Psest_0804 0.80 -2.1
880,845 - Psest_0804 0.80 +1.5
880,845 - Psest_0804 0.80 +0.8
880,845 - Psest_0804 0.80 -0.1
880,853 + Psest_0804 0.80 -0.9
880,853 + Psest_0804 0.80 -0.1
880,853 + Psest_0804 0.80 -0.1
880,853 + Psest_0804 0.80 +1.2
880,853 + Psest_0804 0.80 -0.8
880,853 + Psest_0804 0.80 -0.9
880,853 + Psest_0804 0.80 -0.3
880,853 + Psest_0804 0.80 +0.8
880,854 - Psest_0804 0.80 +0.0
880,854 - Psest_0804 0.80 +2.7
880,854 - Psest_0804 0.80 -0.3
880,854 - Psest_0804 0.80 +0.4
880,854 - Psest_0804 0.80 -1.4
880,889 + Psest_0804 0.82 +1.6
880,889 + Psest_0804 0.82 -0.9
880,889 + Psest_0804 0.82 -0.7
880,890 - Psest_0804 0.82 +0.3
880,890 - Psest_0804 0.82 +0.3
880,934 + Psest_0804 0.83 -0.0
880,934 + Psest_0804 0.83 +1.2
880,934 + Psest_0804 0.83 +0.0
880,934 + Psest_0804 0.83 -0.3
880,935 - Psest_0804 0.83 +1.0
880,935 - Psest_0804 0.83 -1.2
880,935 - Psest_0804 0.83 +1.0
880,935 - Psest_0804 0.83 +0.6
880,935 - Psest_0804 0.83 -1.7
881,027 + Psest_0804 0.86 -2.1
881,027 + Psest_0804 0.86 -1.0
881,027 + Psest_0804 0.86 -0.0
881,027 + Psest_0804 0.86 +2.0
881,033 + Psest_0804 0.86 -1.6
881,033 + Psest_0804 0.86 +1.0
881,033 + Psest_0804 0.86 +0.1
881,033 + Psest_0804 0.86 -0.7
881,162 + +0.3
881,162 + +0.9
881,162 + +0.1
881,163 - -0.0
881,163 - -0.4
881,203 - -0.1
881,304 + +0.2
881,305 - +0.7
881,305 - -0.8
881,451 + -0.2
881,451 + +0.7
881,624 + Psest_0805 0.33 -1.7
881,682 + Psest_0805 0.45 -0.6
881,689 + Psest_0805 0.46 +1.6
881,689 + Psest_0805 0.46 -0.1
881,689 + Psest_0805 0.46 -0.6
881,689 + Psest_0805 0.46 -0.7
881,991 + -0.9
881,992 - +0.0
881,992 - +2.3
882,048 + -1.2
882,048 + +0.9
882,048 + -0.0
882,048 + +0.6
882,048 + -1.8
882,049 - -0.4
882,049 - +2.6
882,049 - -2.1
882,049 - +0.2
882,244 - Psest_0806 0.27 -0.8
882,308 - Psest_0806 0.33 -2.3
882,308 - Psest_0806 0.33 -1.4
882,423 + Psest_0806 0.43 +2.4
882,423 + Psest_0806 0.43 +0.2
882,423 + Psest_0806 0.43 +0.4
882,423 + Psest_0806 0.43 -0.1
882,423 + Psest_0806 0.43 -1.7
882,423 + Psest_0806 0.43 +0.3
882,423 + Psest_0806 0.43 +0.2
882,424 - Psest_0806 0.43 -0.8
882,424 - Psest_0806 0.43 -0.6
882,424 - Psest_0806 0.43 -2.0
882,424 - Psest_0806 0.43 -0.6
882,424 - Psest_0806 0.43 +1.7
882,426 + Psest_0806 0.44 +1.1
882,426 + Psest_0806 0.44 +1.2
882,510 + Psest_0806 0.51 +1.3
882,546 + Psest_0806 0.54 +1.3
882,546 + Psest_0806 0.54 -0.9
882,547 - Psest_0806 0.54 +0.2
882,611 + Psest_0806 0.60 +0.5
882,650 + Psest_0806 0.64 -0.7
882,672 - Psest_0806 0.66 +0.8
882,681 + Psest_0806 0.66 -0.8
882,717 + Psest_0806 0.70 +1.0
882,718 - Psest_0806 0.70 +1.5
882,736 + Psest_0806 0.71 +2.2
882,737 - Psest_0806 0.72 +0.3
882,737 - Psest_0806 0.72 -1.2
882,738 + Psest_0806 0.72 -1.1
882,739 - Psest_0806 0.72 +0.2
882,758 + Psest_0806 0.73 -0.4
882,792 + Psest_0806 0.76 -0.1
882,792 + Psest_0806 0.76 -3.4
882,940 - Psest_0806 0.90 -0.2

Or see this region's nucleotide sequence