Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0479

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0478 and Psest_0479 are separated by 217 nucleotidesPsest_0479 and Psest_0480 overlap by 4 nucleotidesPsest_0480 and Psest_0481 are separated by 153 nucleotides Psest_0478: Psest_0478 - Protein of unknown function (DUF3298)., at 528,682 to 529,419 _0478 Psest_0479: Psest_0479 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 529,637 to 530,254 _0479 Psest_0480: Psest_0480 - Uncharacterized protein conserved in bacteria, at 530,251 to 530,697 _0480 Psest_0481: Psest_0481 - Predicted phosphohydrolases, at 530,851 to 531,666 _0481 Position (kb) 529 530 531Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 528.690 kb on - strandat 528.690 kb on - strandat 528.770 kb on + strand, within Psest_0478at 528.770 kb on + strand, within Psest_0478at 528.770 kb on + strand, within Psest_0478at 528.770 kb on + strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.771 kb on - strand, within Psest_0478at 528.779 kb on + strand, within Psest_0478at 528.779 kb on + strand, within Psest_0478at 528.779 kb on + strand, within Psest_0478at 528.779 kb on + strand, within Psest_0478at 528.780 kb on - strand, within Psest_0478at 528.780 kb on - strand, within Psest_0478at 528.780 kb on - strand, within Psest_0478at 528.780 kb on - strand, within Psest_0478at 528.983 kb on + strand, within Psest_0478at 528.983 kb on + strand, within Psest_0478at 528.983 kb on + strand, within Psest_0478at 528.984 kb on - strand, within Psest_0478at 528.984 kb on - strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.028 kb on + strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.029 kb on - strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.034 kb on + strand, within Psest_0478at 529.035 kb on - strand, within Psest_0478at 529.035 kb on - strand, within Psest_0478at 529.035 kb on - strand, within Psest_0478at 529.035 kb on - strand, within Psest_0478at 529.094 kb on + strand, within Psest_0478at 529.094 kb on + strand, within Psest_0478at 529.095 kb on - strand, within Psest_0478at 529.095 kb on - strand, within Psest_0478at 529.095 kb on - strand, within Psest_0478at 529.139 kb on + strand, within Psest_0478at 529.140 kb on - strand, within Psest_0478at 529.140 kb on - strand, within Psest_0478at 529.140 kb on - strand, within Psest_0478at 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.403 kb on + strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.404 kb on - strandat 529.782 kb on + strand, within Psest_0479at 529.803 kb on + strand, within Psest_0479at 529.804 kb on - strand, within Psest_0479at 529.804 kb on - strand, within Psest_0479at 529.804 kb on - strand, within Psest_0479at 530.012 kb on + strand, within Psest_0479at 530.012 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.048 kb on + strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.049 kb on - strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.054 kb on + strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.055 kb on - strand, within Psest_0479at 530.119 kb on + strand, within Psest_0479at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.317 kb on + strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.318 kb on - strand, within Psest_0480at 530.321 kb on + strand, within Psest_0480at 530.321 kb on + strand, within Psest_0480at 530.321 kb on + strand, within Psest_0480at 530.322 kb on - strand, within Psest_0480at 530.322 kb on - strand, within Psest_0480at 530.322 kb on - strand, within Psest_0480at 530.515 kb on + strand, within Psest_0480at 530.515 kb on + strand, within Psest_0480at 530.578 kb on + strand, within Psest_0480at 530.578 kb on + strand, within Psest_0480at 530.578 kb on + strand, within Psest_0480at 530.578 kb on + strand, within Psest_0480at 530.578 kb on + strand, within Psest_0480at 530.578 kb on + strand, within Psest_0480at 530.579 kb on - strand, within Psest_0480at 530.579 kb on - strand, within Psest_0480at 530.579 kb on - strand, within Psest_0480at 530.579 kb on - strand, within Psest_0480at 530.579 kb on - strand, within Psest_0480at 530.579 kb on - strand, within Psest_0480at 530.579 kb on - strand, within Psest_0480at 530.579 kb on - strand, within Psest_0480at 530.585 kb on - strand, within Psest_0480at 530.751 kb on + strandat 530.751 kb on + strandat 530.751 kb on + strandat 530.752 kb on - strandat 530.752 kb on - strandat 530.752 kb on - strandat 530.811 kb on + strandat 530.811 kb on + strandat 530.812 kb on - strandat 530.812 kb on - strandat 530.816 kb on + strandat 530.816 kb on + strandat 530.816 kb on + strandat 530.817 kb on - strandat 530.817 kb on - strandat 530.817 kb on - strandat 530.817 kb on - strandat 530.955 kb on + strand, within Psest_0481

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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528,690 - -0.8
528,690 - +0.6
528,770 + Psest_0478 0.12 -1.4
528,770 + Psest_0478 0.12 +1.0
528,770 + Psest_0478 0.12 +0.3
528,770 + Psest_0478 0.12 -0.5
528,771 - Psest_0478 0.12 -0.0
528,771 - Psest_0478 0.12 -0.2
528,771 - Psest_0478 0.12 +0.6
528,771 - Psest_0478 0.12 +0.2
528,771 - Psest_0478 0.12 -0.4
528,779 + Psest_0478 0.13 -0.2
528,779 + Psest_0478 0.13 -0.5
528,779 + Psest_0478 0.13 +0.4
528,779 + Psest_0478 0.13 -0.1
528,780 - Psest_0478 0.13 +0.9
528,780 - Psest_0478 0.13 -1.5
528,780 - Psest_0478 0.13 +0.7
528,780 - Psest_0478 0.13 +0.4
528,983 + Psest_0478 0.41 -0.6
528,983 + Psest_0478 0.41 +1.2
528,983 + Psest_0478 0.41 -0.8
528,984 - Psest_0478 0.41 -0.3
528,984 - Psest_0478 0.41 +2.2
529,028 + Psest_0478 0.47 -0.7
529,028 + Psest_0478 0.47 +1.3
529,028 + Psest_0478 0.47 +0.7
529,028 + Psest_0478 0.47 -2.9
529,028 + Psest_0478 0.47 -3.1
529,028 + Psest_0478 0.47 -0.2
529,028 + Psest_0478 0.47 -1.1
529,029 - Psest_0478 0.47 -1.2
529,029 - Psest_0478 0.47 +0.5
529,029 - Psest_0478 0.47 +0.3
529,029 - Psest_0478 0.47 +0.0
529,029 - Psest_0478 0.47 -1.8
529,034 + Psest_0478 0.48 -1.0
529,034 + Psest_0478 0.48 +2.2
529,034 + Psest_0478 0.48 -1.0
529,034 + Psest_0478 0.48 +0.4
529,034 + Psest_0478 0.48 -0.9
529,035 - Psest_0478 0.48 -1.3
529,035 - Psest_0478 0.48 +0.2
529,035 - Psest_0478 0.48 +0.5
529,035 - Psest_0478 0.48 -1.3
529,094 + Psest_0478 0.56 +0.5
529,094 + Psest_0478 0.56 +1.1
529,095 - Psest_0478 0.56 -2.6
529,095 - Psest_0478 0.56 +0.4
529,095 - Psest_0478 0.56 +0.6
529,139 + Psest_0478 0.62 +0.2
529,140 - Psest_0478 0.62 -0.6
529,140 - Psest_0478 0.62 +1.2
529,140 - Psest_0478 0.62 +1.7
529,403 + +0.6
529,403 + -0.4
529,403 + -1.2
529,403 + +0.9
529,403 + +2.8
529,403 + +1.0
529,403 + -0.4
529,403 + -0.1
529,403 + +0.0
529,404 - +0.0
529,404 - +1.2
529,404 - +0.9
529,404 - +0.5
529,404 - +0.9
529,404 - +1.1
529,404 - -1.7
529,782 + Psest_0479 0.23 +1.2
529,803 + Psest_0479 0.27 +1.6
529,804 - Psest_0479 0.27 +1.0
529,804 - Psest_0479 0.27 +2.2
529,804 - Psest_0479 0.27 +1.7
530,012 + Psest_0479 0.61 -1.2
530,012 + Psest_0479 0.61 +2.2
530,048 + Psest_0479 0.67 +0.5
530,048 + Psest_0479 0.67 +3.3
530,048 + Psest_0479 0.67 +0.3
530,048 + Psest_0479 0.67 +1.6
530,048 + Psest_0479 0.67 +2.3
530,048 + Psest_0479 0.67 -0.6
530,049 - Psest_0479 0.67 +0.6
530,049 - Psest_0479 0.67 +0.8
530,049 - Psest_0479 0.67 -1.7
530,049 - Psest_0479 0.67 +1.4
530,049 - Psest_0479 0.67 +0.9
530,049 - Psest_0479 0.67 -0.3
530,054 + Psest_0479 0.67 +1.5
530,054 + Psest_0479 0.67 +0.3
530,054 + Psest_0479 0.67 +0.3
530,054 + Psest_0479 0.67 +1.0
530,054 + Psest_0479 0.67 +1.4
530,054 + Psest_0479 0.67 -0.6
530,054 + Psest_0479 0.67 -0.2
530,055 - Psest_0479 0.68 +1.9
530,055 - Psest_0479 0.68 +1.3
530,055 - Psest_0479 0.68 +2.5
530,055 - Psest_0479 0.68 -0.2
530,055 - Psest_0479 0.68 +1.2
530,055 - Psest_0479 0.68 -0.1
530,055 - Psest_0479 0.68 +2.9
530,055 - Psest_0479 0.68 +1.0
530,055 - Psest_0479 0.68 +1.9
530,055 - Psest_0479 0.68 +0.4
530,055 - Psest_0479 0.68 +0.5
530,055 - Psest_0479 0.68 +1.5
530,055 - Psest_0479 0.68 +0.6
530,055 - Psest_0479 0.68 -0.4
530,119 + Psest_0479 0.78 +1.4
530,317 + Psest_0480 0.15 +0.3
530,317 + Psest_0480 0.15 -1.3
530,317 + Psest_0480 0.15 +4.7
530,317 + Psest_0480 0.15 +0.1
530,317 + Psest_0480 0.15 -0.0
530,317 + Psest_0480 0.15 -0.7
530,318 - Psest_0480 0.15 +0.5
530,318 - Psest_0480 0.15 -0.1
530,318 - Psest_0480 0.15 +0.0
530,318 - Psest_0480 0.15 -0.2
530,318 - Psest_0480 0.15 -1.2
530,321 + Psest_0480 0.16 -0.3
530,321 + Psest_0480 0.16 -0.4
530,321 + Psest_0480 0.16 +2.9
530,322 - Psest_0480 0.16 -0.4
530,322 - Psest_0480 0.16 -2.6
530,322 - Psest_0480 0.16 +0.2
530,515 + Psest_0480 0.59 +0.5
530,515 + Psest_0480 0.59 -0.2
530,578 + Psest_0480 0.73 -0.9
530,578 + Psest_0480 0.73 +0.4
530,578 + Psest_0480 0.73 -2.0
530,578 + Psest_0480 0.73 +0.1
530,578 + Psest_0480 0.73 +1.3
530,578 + Psest_0480 0.73 -1.0
530,579 - Psest_0480 0.73 -0.2
530,579 - Psest_0480 0.73 -2.7
530,579 - Psest_0480 0.73 -0.6
530,579 - Psest_0480 0.73 -1.4
530,579 - Psest_0480 0.73 -1.4
530,579 - Psest_0480 0.73 +1.6
530,579 - Psest_0480 0.73 +2.7
530,579 - Psest_0480 0.73 -0.4
530,585 - Psest_0480 0.75 +0.9
530,751 + -2.4
530,751 + +1.4
530,751 + +0.6
530,752 - -0.5
530,752 - +1.0
530,752 - -2.4
530,811 + -1.1
530,811 + -0.2
530,812 - -1.4
530,812 - +2.8
530,816 + +1.0
530,816 + +0.4
530,816 + -0.5
530,817 - +0.2
530,817 - +0.8
530,817 - -0.4
530,817 - -1.4
530,955 + Psest_0481 0.13 +0.0

Or see this region's nucleotide sequence