Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2515

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2513 and Psest_2514 are separated by 102 nucleotidesPsest_2514 and Psest_2515 are separated by 147 nucleotidesPsest_2515 and Psest_2516 overlap by 4 nucleotides Psest_2513: Psest_2513 - Predicted membrane protein, at 2,691,642 to 2,692,055 _2513 Psest_2514: Psest_2514 - Predicted membrane protein, at 2,692,158 to 2,692,637 _2514 Psest_2515: Psest_2515 - cytochrome c oxidase, subunit II, at 2,692,785 to 2,693,675 _2515 Psest_2516: Psest_2516 - cytochrome c oxidase, subunit I, at 2,693,672 to 2,696,197 _2516 Position (kb) 2692 2693 2694Strain fitness (log2 ratio) -2 -1 0 1 2at 2691.975 kb on + strand, within Psest_2513at 2691.976 kb on - strand, within Psest_2513at 2691.976 kb on - strand, within Psest_2513at 2691.976 kb on - strand, within Psest_2513at 2692.517 kb on - strand, within Psest_2514at 2692.607 kb on + strandat 2692.607 kb on + strandat 2692.657 kb on + strandat 2692.657 kb on + strandat 2692.657 kb on + strandat 2692.657 kb on + strandat 2692.658 kb on - strandat 2692.840 kb on + strandat 2692.869 kb on + strandat 2692.869 kb on + strandat 2692.869 kb on + strandat 2692.870 kb on - strandat 2692.896 kb on + strand, within Psest_2515at 2692.896 kb on + strand, within Psest_2515at 2692.896 kb on + strand, within Psest_2515at 2692.896 kb on + strand, within Psest_2515at 2692.896 kb on + strand, within Psest_2515at 2692.896 kb on + strand, within Psest_2515at 2692.896 kb on + strand, within Psest_2515at 2692.896 kb on + strand, within Psest_2515at 2692.896 kb on + strand, within Psest_2515at 2692.897 kb on - strand, within Psest_2515at 2692.897 kb on - strand, within Psest_2515at 2692.897 kb on - strand, within Psest_2515at 2692.897 kb on - strand, within Psest_2515at 2692.897 kb on - strand, within Psest_2515at 2692.897 kb on - strand, within Psest_2515at 2693.047 kb on + strand, within Psest_2515at 2693.107 kb on + strand, within Psest_2515at 2693.910 kb on - strandat 2693.910 kb on - strandat 2693.910 kb on - strandat 2693.987 kb on + strand, within Psest_2516at 2694.024 kb on + strand, within Psest_2516at 2694.053 kb on + strand, within Psest_2516at 2694.059 kb on + strand, within Psest_2516at 2694.060 kb on - strand, within Psest_2516at 2694.131 kb on + strand, within Psest_2516at 2694.131 kb on + strand, within Psest_2516at 2694.131 kb on + strand, within Psest_2516at 2694.131 kb on + strand, within Psest_2516at 2694.131 kb on + strand, within Psest_2516at 2694.132 kb on - strand, within Psest_2516at 2694.132 kb on - strand, within Psest_2516at 2694.132 kb on - strand, within Psest_2516at 2694.219 kb on + strand, within Psest_2516at 2694.296 kb on + strand, within Psest_2516at 2694.297 kb on - strand, within Psest_2516at 2694.297 kb on - strand, within Psest_2516at 2694.305 kb on + strand, within Psest_2516at 2694.306 kb on - strand, within Psest_2516at 2694.306 kb on - strand, within Psest_2516at 2694.306 kb on - strand, within Psest_2516at 2694.476 kb on + strand, within Psest_2516at 2694.476 kb on + strand, within Psest_2516at 2694.476 kb on + strand, within Psest_2516at 2694.476 kb on + strand, within Psest_2516at 2694.476 kb on + strand, within Psest_2516at 2694.476 kb on + strand, within Psest_2516at 2694.476 kb on + strand, within Psest_2516at 2694.477 kb on - strand, within Psest_2516at 2694.477 kb on - strand, within Psest_2516at 2694.477 kb on - strand, within Psest_2516at 2694.477 kb on - strand, within Psest_2516at 2694.477 kb on - strand, within Psest_2516at 2694.477 kb on - strand, within Psest_2516at 2694.477 kb on - strand, within Psest_2516at 2694.477 kb on - strand, within Psest_2516

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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2,691,975 + Psest_2513 0.80 -2.3
2,691,976 - Psest_2513 0.81 -0.7
2,691,976 - Psest_2513 0.81 +2.0
2,691,976 - Psest_2513 0.81 +0.1
2,692,517 - Psest_2514 0.75 -1.4
2,692,607 + +0.3
2,692,607 + -1.9
2,692,657 + +0.4
2,692,657 + -0.1
2,692,657 + -0.2
2,692,657 + -0.8
2,692,658 - -0.1
2,692,840 + -0.4
2,692,869 + +0.2
2,692,869 + -0.8
2,692,869 + -1.8
2,692,870 - +0.0
2,692,896 + Psest_2515 0.12 -1.4
2,692,896 + Psest_2515 0.12 -1.6
2,692,896 + Psest_2515 0.12 -0.9
2,692,896 + Psest_2515 0.12 -2.1
2,692,896 + Psest_2515 0.12 -1.0
2,692,896 + Psest_2515 0.12 -0.2
2,692,896 + Psest_2515 0.12 +0.2
2,692,896 + Psest_2515 0.12 -1.5
2,692,896 + Psest_2515 0.12 -1.2
2,692,897 - Psest_2515 0.13 -0.8
2,692,897 - Psest_2515 0.13 +0.0
2,692,897 - Psest_2515 0.13 +1.1
2,692,897 - Psest_2515 0.13 -0.9
2,692,897 - Psest_2515 0.13 -0.2
2,692,897 - Psest_2515 0.13 +0.4
2,693,047 + Psest_2515 0.29 +0.7
2,693,107 + Psest_2515 0.36 -0.2
2,693,910 - -0.0
2,693,910 - +0.3
2,693,910 - -0.6
2,693,987 + Psest_2516 0.12 -0.9
2,694,024 + Psest_2516 0.14 -0.2
2,694,053 + Psest_2516 0.15 -0.7
2,694,059 + Psest_2516 0.15 +0.1
2,694,060 - Psest_2516 0.15 +0.0
2,694,131 + Psest_2516 0.18 +0.5
2,694,131 + Psest_2516 0.18 -0.8
2,694,131 + Psest_2516 0.18 -0.7
2,694,131 + Psest_2516 0.18 -0.9
2,694,131 + Psest_2516 0.18 -0.6
2,694,132 - Psest_2516 0.18 -0.4
2,694,132 - Psest_2516 0.18 -0.5
2,694,132 - Psest_2516 0.18 +0.8
2,694,219 + Psest_2516 0.22 +1.0
2,694,296 + Psest_2516 0.25 +0.2
2,694,297 - Psest_2516 0.25 +0.7
2,694,297 - Psest_2516 0.25 +0.7
2,694,305 + Psest_2516 0.25 -0.7
2,694,306 - Psest_2516 0.25 +0.3
2,694,306 - Psest_2516 0.25 -0.2
2,694,306 - Psest_2516 0.25 +2.4
2,694,476 + Psest_2516 0.32 +1.6
2,694,476 + Psest_2516 0.32 -0.7
2,694,476 + Psest_2516 0.32 +2.0
2,694,476 + Psest_2516 0.32 +0.4
2,694,476 + Psest_2516 0.32 +1.2
2,694,476 + Psest_2516 0.32 -0.8
2,694,476 + Psest_2516 0.32 -1.5
2,694,477 - Psest_2516 0.32 +0.4
2,694,477 - Psest_2516 0.32 +1.4
2,694,477 - Psest_2516 0.32 +1.2
2,694,477 - Psest_2516 0.32 +1.2
2,694,477 - Psest_2516 0.32 -0.4
2,694,477 - Psest_2516 0.32 +0.1
2,694,477 - Psest_2516 0.32 +0.3
2,694,477 - Psest_2516 0.32 -0.2

Or see this region's nucleotide sequence