Experiment: Phosphomycin 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2513 and Psest_2514 are separated by 102 nucleotides Psest_2514 and Psest_2515 are separated by 147 nucleotides Psest_2515 and Psest_2516 overlap by 4 nucleotides
Psest_2513: Psest_2513 - Predicted membrane protein, at 2,691,642 to 2,692,055
_2513
Psest_2514: Psest_2514 - Predicted membrane protein, at 2,692,158 to 2,692,637
_2514
Psest_2515: Psest_2515 - cytochrome c oxidase, subunit II, at 2,692,785 to 2,693,675
_2515
Psest_2516: Psest_2516 - cytochrome c oxidase, subunit I, at 2,693,672 to 2,696,197
_2516
Position (kb)
2692
2693
2694 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2691.975 kb on + strand, within Psest_2513 at 2691.976 kb on - strand, within Psest_2513 at 2691.976 kb on - strand, within Psest_2513 at 2691.976 kb on - strand, within Psest_2513 at 2692.517 kb on - strand, within Psest_2514 at 2692.607 kb on + strand at 2692.607 kb on + strand at 2692.657 kb on + strand at 2692.657 kb on + strand at 2692.657 kb on + strand at 2692.657 kb on + strand at 2692.658 kb on - strand at 2692.840 kb on + strand at 2692.869 kb on + strand at 2692.869 kb on + strand at 2692.869 kb on + strand at 2692.870 kb on - strand at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.896 kb on + strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2692.897 kb on - strand, within Psest_2515 at 2693.047 kb on + strand, within Psest_2515 at 2693.107 kb on + strand, within Psest_2515 at 2693.910 kb on - strand at 2693.910 kb on - strand at 2693.910 kb on - strand at 2693.987 kb on + strand, within Psest_2516 at 2694.024 kb on + strand, within Psest_2516 at 2694.053 kb on + strand, within Psest_2516 at 2694.059 kb on + strand, within Psest_2516 at 2694.060 kb on - strand, within Psest_2516 at 2694.131 kb on + strand, within Psest_2516 at 2694.131 kb on + strand, within Psest_2516 at 2694.131 kb on + strand, within Psest_2516 at 2694.131 kb on + strand, within Psest_2516 at 2694.131 kb on + strand, within Psest_2516 at 2694.132 kb on - strand, within Psest_2516 at 2694.132 kb on - strand, within Psest_2516 at 2694.132 kb on - strand, within Psest_2516 at 2694.219 kb on + strand, within Psest_2516 at 2694.296 kb on + strand, within Psest_2516 at 2694.297 kb on - strand, within Psest_2516 at 2694.297 kb on - strand, within Psest_2516 at 2694.305 kb on + strand, within Psest_2516 at 2694.306 kb on - strand, within Psest_2516 at 2694.306 kb on - strand, within Psest_2516 at 2694.306 kb on - strand, within Psest_2516 at 2694.476 kb on + strand, within Psest_2516 at 2694.476 kb on + strand, within Psest_2516 at 2694.476 kb on + strand, within Psest_2516 at 2694.476 kb on + strand, within Psest_2516 at 2694.476 kb on + strand, within Psest_2516 at 2694.476 kb on + strand, within Psest_2516 at 2694.476 kb on + strand, within Psest_2516 at 2694.477 kb on - strand, within Psest_2516 at 2694.477 kb on - strand, within Psest_2516 at 2694.477 kb on - strand, within Psest_2516 at 2694.477 kb on - strand, within Psest_2516 at 2694.477 kb on - strand, within Psest_2516 at 2694.477 kb on - strand, within Psest_2516 at 2694.477 kb on - strand, within Psest_2516 at 2694.477 kb on - strand, within Psest_2516
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml remove 2,691,975 + Psest_2513 0.80 -2.3 2,691,976 - Psest_2513 0.81 -0.7 2,691,976 - Psest_2513 0.81 +2.0 2,691,976 - Psest_2513 0.81 +0.1 2,692,517 - Psest_2514 0.75 -1.4 2,692,607 + +0.3 2,692,607 + -1.9 2,692,657 + +0.4 2,692,657 + -0.1 2,692,657 + -0.2 2,692,657 + -0.8 2,692,658 - -0.1 2,692,840 + -0.4 2,692,869 + +0.2 2,692,869 + -0.8 2,692,869 + -1.8 2,692,870 - +0.0 2,692,896 + Psest_2515 0.12 -1.4 2,692,896 + Psest_2515 0.12 -1.6 2,692,896 + Psest_2515 0.12 -0.9 2,692,896 + Psest_2515 0.12 -2.1 2,692,896 + Psest_2515 0.12 -1.0 2,692,896 + Psest_2515 0.12 -0.2 2,692,896 + Psest_2515 0.12 +0.2 2,692,896 + Psest_2515 0.12 -1.5 2,692,896 + Psest_2515 0.12 -1.2 2,692,897 - Psest_2515 0.13 -0.8 2,692,897 - Psest_2515 0.13 +0.0 2,692,897 - Psest_2515 0.13 +1.1 2,692,897 - Psest_2515 0.13 -0.9 2,692,897 - Psest_2515 0.13 -0.2 2,692,897 - Psest_2515 0.13 +0.4 2,693,047 + Psest_2515 0.29 +0.7 2,693,107 + Psest_2515 0.36 -0.2 2,693,910 - -0.0 2,693,910 - +0.3 2,693,910 - -0.6 2,693,987 + Psest_2516 0.12 -0.9 2,694,024 + Psest_2516 0.14 -0.2 2,694,053 + Psest_2516 0.15 -0.7 2,694,059 + Psest_2516 0.15 +0.1 2,694,060 - Psest_2516 0.15 +0.0 2,694,131 + Psest_2516 0.18 +0.5 2,694,131 + Psest_2516 0.18 -0.8 2,694,131 + Psest_2516 0.18 -0.7 2,694,131 + Psest_2516 0.18 -0.9 2,694,131 + Psest_2516 0.18 -0.6 2,694,132 - Psest_2516 0.18 -0.4 2,694,132 - Psest_2516 0.18 -0.5 2,694,132 - Psest_2516 0.18 +0.8 2,694,219 + Psest_2516 0.22 +1.0 2,694,296 + Psest_2516 0.25 +0.2 2,694,297 - Psest_2516 0.25 +0.7 2,694,297 - Psest_2516 0.25 +0.7 2,694,305 + Psest_2516 0.25 -0.7 2,694,306 - Psest_2516 0.25 +0.3 2,694,306 - Psest_2516 0.25 -0.2 2,694,306 - Psest_2516 0.25 +2.4 2,694,476 + Psest_2516 0.32 +1.6 2,694,476 + Psest_2516 0.32 -0.7 2,694,476 + Psest_2516 0.32 +2.0 2,694,476 + Psest_2516 0.32 +0.4 2,694,476 + Psest_2516 0.32 +1.2 2,694,476 + Psest_2516 0.32 -0.8 2,694,476 + Psest_2516 0.32 -1.5 2,694,477 - Psest_2516 0.32 +0.4 2,694,477 - Psest_2516 0.32 +1.4 2,694,477 - Psest_2516 0.32 +1.2 2,694,477 - Psest_2516 0.32 +1.2 2,694,477 - Psest_2516 0.32 -0.4 2,694,477 - Psest_2516 0.32 +0.1 2,694,477 - Psest_2516 0.32 +0.3 2,694,477 - Psest_2516 0.32 -0.2
Or see this region's nucleotide sequence