Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2498

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2496 and Psest_2497 are separated by 3 nucleotidesPsest_2497 and Psest_2498 overlap by 7 nucleotidesPsest_2498 and Psest_2499 are separated by 361 nucleotides Psest_2496: Psest_2496 - succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup, at 2,672,116 to 2,673,888 _2496 Psest_2497: Psest_2497 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 2,673,892 to 2,674,260 _2497 Psest_2498: Psest_2498 - succinate dehydrogenase, cytochrome b556 subunit, at 2,674,254 to 2,674,628 _2498 Psest_2499: Psest_2499 - citrate synthase I (hexameric type), at 2,674,990 to 2,676,261 _2499 Position (kb) 2674 2675Strain fitness (log2 ratio) -1 0 1 2 3at 2674.728 kb on - strandat 2674.764 kb on - strandat 2674.766 kb on - strandat 2674.766 kb on - strandat 2674.774 kb on - strandat 2674.774 kb on - strandat 2674.774 kb on - strandat 2674.774 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.827 kb on - strandat 2674.829 kb on - strandat 2674.829 kb on - strandat 2674.829 kb on - strandat 2674.829 kb on - strandat 2674.830 kb on + strandat 2674.830 kb on + strandat 2674.830 kb on + strandat 2674.830 kb on + strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.831 kb on - strandat 2674.860 kb on - strandat 2674.860 kb on - strandat 2674.860 kb on - strandat 2674.860 kb on - strandat 2674.884 kb on - strandat 2674.918 kb on + strandat 2674.918 kb on + strandat 2674.918 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.926 kb on + strandat 2674.927 kb on - strandat 2674.927 kb on - strandat 2674.928 kb on + strandat 2674.928 kb on + strandat 2675.078 kb on + strandat 2675.078 kb on + strandat 2675.079 kb on - strandat 2675.164 kb on + strand, within Psest_2499at 2675.237 kb on - strand, within Psest_2499

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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2,674,728 - -1.2
2,674,764 - +1.0
2,674,766 - +0.7
2,674,766 - +0.9
2,674,774 - +1.4
2,674,774 - +0.7
2,674,774 - +2.0
2,674,774 - +0.9
2,674,827 - -1.3
2,674,827 - +0.4
2,674,827 - -0.2
2,674,827 - +1.2
2,674,827 - +1.6
2,674,827 - +0.0
2,674,827 - +1.6
2,674,827 - +0.1
2,674,829 - -0.0
2,674,829 - +0.2
2,674,829 - +0.2
2,674,829 - -1.4
2,674,830 + +1.4
2,674,830 + -0.6
2,674,830 + +0.6
2,674,830 + +2.4
2,674,831 - +0.3
2,674,831 - +0.3
2,674,831 - -0.6
2,674,831 - +1.0
2,674,831 - +1.4
2,674,831 - +3.2
2,674,831 - +0.8
2,674,831 - +0.9
2,674,831 - -0.2
2,674,831 - -0.1
2,674,831 - +2.1
2,674,831 - -0.9
2,674,831 - +0.3
2,674,831 - -0.4
2,674,831 - -0.2
2,674,831 - +1.1
2,674,860 - -1.2
2,674,860 - +0.7
2,674,860 - -0.8
2,674,860 - +0.9
2,674,884 - +2.0
2,674,918 + +3.6
2,674,918 + +0.4
2,674,918 + -0.1
2,674,926 + -0.8
2,674,926 + +2.3
2,674,926 + -0.8
2,674,926 + -0.3
2,674,926 + -0.0
2,674,926 + +1.8
2,674,926 + +1.8
2,674,926 + +2.7
2,674,926 + +0.1
2,674,926 + +1.3
2,674,927 - +2.6
2,674,927 - +1.4
2,674,928 + +1.7
2,674,928 + +1.9
2,675,078 + +0.1
2,675,078 + +1.9
2,675,079 - +2.4
2,675,164 + Psest_2499 0.14 +0.4
2,675,237 - Psest_2499 0.19 +0.8

Or see this region's nucleotide sequence