Experiment: Phosphomycin 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2496 and Psest_2497 are separated by 3 nucleotides Psest_2497 and Psest_2498 overlap by 7 nucleotides Psest_2498 and Psest_2499 are separated by 361 nucleotides
Psest_2496: Psest_2496 - succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup, at 2,672,116 to 2,673,888
_2496
Psest_2497: Psest_2497 - succinate dehydrogenase, hydrophobic membrane anchor protein, at 2,673,892 to 2,674,260
_2497
Psest_2498: Psest_2498 - succinate dehydrogenase, cytochrome b556 subunit, at 2,674,254 to 2,674,628
_2498
Psest_2499: Psest_2499 - citrate synthase I (hexameric type), at 2,674,990 to 2,676,261
_2499
Position (kb)
2674
2675 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2674.728 kb on - strand at 2674.764 kb on - strand at 2674.766 kb on - strand at 2674.766 kb on - strand at 2674.774 kb on - strand at 2674.774 kb on - strand at 2674.774 kb on - strand at 2674.774 kb on - strand at 2674.827 kb on - strand at 2674.827 kb on - strand at 2674.827 kb on - strand at 2674.827 kb on - strand at 2674.827 kb on - strand at 2674.827 kb on - strand at 2674.827 kb on - strand at 2674.827 kb on - strand at 2674.829 kb on - strand at 2674.829 kb on - strand at 2674.829 kb on - strand at 2674.829 kb on - strand at 2674.830 kb on + strand at 2674.830 kb on + strand at 2674.830 kb on + strand at 2674.830 kb on + strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.831 kb on - strand at 2674.860 kb on - strand at 2674.860 kb on - strand at 2674.860 kb on - strand at 2674.860 kb on - strand at 2674.884 kb on - strand at 2674.918 kb on + strand at 2674.918 kb on + strand at 2674.918 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.926 kb on + strand at 2674.927 kb on - strand at 2674.927 kb on - strand at 2674.928 kb on + strand at 2674.928 kb on + strand at 2675.078 kb on + strand at 2675.078 kb on + strand at 2675.079 kb on - strand at 2675.164 kb on + strand, within Psest_2499 at 2675.237 kb on - strand, within Psest_2499
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml remove 2,674,728 - -1.2 2,674,764 - +1.0 2,674,766 - +0.7 2,674,766 - +0.9 2,674,774 - +1.4 2,674,774 - +0.7 2,674,774 - +2.0 2,674,774 - +0.9 2,674,827 - -1.3 2,674,827 - +0.4 2,674,827 - -0.2 2,674,827 - +1.2 2,674,827 - +1.6 2,674,827 - +0.0 2,674,827 - +1.6 2,674,827 - +0.1 2,674,829 - -0.0 2,674,829 - +0.2 2,674,829 - +0.2 2,674,829 - -1.4 2,674,830 + +1.4 2,674,830 + -0.6 2,674,830 + +0.6 2,674,830 + +2.4 2,674,831 - +0.3 2,674,831 - +0.3 2,674,831 - -0.6 2,674,831 - +1.0 2,674,831 - +1.4 2,674,831 - +3.2 2,674,831 - +0.8 2,674,831 - +0.9 2,674,831 - -0.2 2,674,831 - -0.1 2,674,831 - +2.1 2,674,831 - -0.9 2,674,831 - +0.3 2,674,831 - -0.4 2,674,831 - -0.2 2,674,831 - +1.1 2,674,860 - -1.2 2,674,860 - +0.7 2,674,860 - -0.8 2,674,860 - +0.9 2,674,884 - +2.0 2,674,918 + +3.6 2,674,918 + +0.4 2,674,918 + -0.1 2,674,926 + -0.8 2,674,926 + +2.3 2,674,926 + -0.8 2,674,926 + -0.3 2,674,926 + -0.0 2,674,926 + +1.8 2,674,926 + +1.8 2,674,926 + +2.7 2,674,926 + +0.1 2,674,926 + +1.3 2,674,927 - +2.6 2,674,927 - +1.4 2,674,928 + +1.7 2,674,928 + +1.9 2,675,078 + +0.1 2,675,078 + +1.9 2,675,079 - +2.4 2,675,164 + Psest_2499 0.14 +0.4 2,675,237 - Psest_2499 0.19 +0.8
Or see this region's nucleotide sequence