Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2076

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2075 and Psest_2076 are separated by 182 nucleotidesPsest_2076 and Psest_2077 are separated by 37 nucleotides Psest_2075: Psest_2075 - Arginine/lysine/ornithine decarboxylases, at 2,203,294 to 2,205,543 _2075 Psest_2076: Psest_2076 - Enoyl-CoA hydratase/carnithine racemase, at 2,205,726 to 2,206,538 _2076 Psest_2077: Psest_2077 - hypothetical protein, at 2,206,576 to 2,208,258 _2077 Position (kb) 2205 2206 2207Strain fitness (log2 ratio) -2 -1 0 1 2at 2204.845 kb on + strand, within Psest_2075at 2204.845 kb on + strand, within Psest_2075at 2204.845 kb on + strand, within Psest_2075at 2204.846 kb on - strand, within Psest_2075at 2204.943 kb on + strand, within Psest_2075at 2204.944 kb on - strand, within Psest_2075at 2204.999 kb on + strand, within Psest_2075at 2205.000 kb on - strand, within Psest_2075at 2205.000 kb on - strand, within Psest_2075at 2205.090 kb on - strand, within Psest_2075at 2205.099 kb on - strand, within Psest_2075at 2205.140 kb on - strand, within Psest_2075at 2205.226 kb on + strand, within Psest_2075at 2205.226 kb on + strand, within Psest_2075at 2205.226 kb on + strand, within Psest_2075at 2205.226 kb on + strand, within Psest_2075at 2205.226 kb on + strand, within Psest_2075at 2205.226 kb on + strand, within Psest_2075at 2205.227 kb on - strand, within Psest_2075at 2205.227 kb on - strand, within Psest_2075at 2205.511 kb on - strandat 2205.517 kb on + strandat 2205.517 kb on + strandat 2205.518 kb on - strandat 2205.608 kb on - strandat 2205.654 kb on - strandat 2205.655 kb on + strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.656 kb on - strandat 2205.735 kb on + strandat 2205.735 kb on + strandat 2205.736 kb on - strandat 2205.752 kb on - strandat 2205.843 kb on - strand, within Psest_2076at 2206.123 kb on - strand, within Psest_2076at 2206.244 kb on + strand, within Psest_2076at 2206.245 kb on - strand, within Psest_2076at 2206.302 kb on + strand, within Psest_2076at 2206.302 kb on + strand, within Psest_2076at 2206.303 kb on - strand, within Psest_2076at 2206.303 kb on - strand, within Psest_2076at 2206.303 kb on - strand, within Psest_2076at 2206.303 kb on - strand, within Psest_2076at 2206.405 kb on - strand, within Psest_2076at 2206.406 kb on + strand, within Psest_2076at 2206.406 kb on + strand, within Psest_2076at 2206.407 kb on - strand, within Psest_2076at 2206.440 kb on + strand, within Psest_2076at 2206.440 kb on + strand, within Psest_2076at 2206.441 kb on - strand, within Psest_2076at 2206.505 kb on + strandat 2206.505 kb on + strandat 2206.506 kb on - strandat 2206.572 kb on - strandat 2206.590 kb on + strandat 2206.590 kb on + strandat 2206.590 kb on + strandat 2206.590 kb on + strandat 2206.591 kb on - strandat 2206.591 kb on - strandat 2206.607 kb on + strandat 2206.608 kb on - strandat 2206.678 kb on - strandat 2206.858 kb on + strand, within Psest_2077at 2206.858 kb on + strand, within Psest_2077at 2206.858 kb on + strand, within Psest_2077at 2206.859 kb on - strand, within Psest_2077at 2206.859 kb on - strand, within Psest_2077at 2206.859 kb on - strand, within Psest_2077at 2207.080 kb on + strand, within Psest_2077at 2207.080 kb on + strand, within Psest_2077at 2207.080 kb on + strand, within Psest_2077at 2207.081 kb on - strand, within Psest_2077at 2207.081 kb on - strand, within Psest_2077at 2207.081 kb on - strand, within Psest_2077at 2207.081 kb on - strand, within Psest_2077at 2207.093 kb on + strand, within Psest_2077at 2207.324 kb on - strand, within Psest_2077at 2207.359 kb on + strand, within Psest_2077at 2207.359 kb on + strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077at 2207.360 kb on - strand, within Psest_2077

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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2,204,845 + Psest_2075 0.69 -0.1
2,204,845 + Psest_2075 0.69 -0.6
2,204,845 + Psest_2075 0.69 -2.3
2,204,846 - Psest_2075 0.69 +0.9
2,204,943 + Psest_2075 0.73 -2.7
2,204,944 - Psest_2075 0.73 +0.1
2,204,999 + Psest_2075 0.76 -0.3
2,205,000 - Psest_2075 0.76 -0.0
2,205,000 - Psest_2075 0.76 -0.2
2,205,090 - Psest_2075 0.80 +0.1
2,205,099 - Psest_2075 0.80 -0.9
2,205,140 - Psest_2075 0.82 -0.9
2,205,226 + Psest_2075 0.86 +0.2
2,205,226 + Psest_2075 0.86 +0.1
2,205,226 + Psest_2075 0.86 +1.2
2,205,226 + Psest_2075 0.86 -0.6
2,205,226 + Psest_2075 0.86 -0.2
2,205,226 + Psest_2075 0.86 -1.0
2,205,227 - Psest_2075 0.86 -0.1
2,205,227 - Psest_2075 0.86 -1.3
2,205,511 - -1.4
2,205,517 + -1.6
2,205,517 + +1.1
2,205,518 - +0.6
2,205,608 - +1.3
2,205,654 - -0.0
2,205,655 + -0.1
2,205,656 - +1.0
2,205,656 - -1.2
2,205,656 - -0.3
2,205,656 - -0.9
2,205,656 - -0.3
2,205,656 - -1.4
2,205,656 - -0.9
2,205,656 - -0.2
2,205,735 + +0.5
2,205,735 + -1.0
2,205,736 - +0.2
2,205,752 - +0.6
2,205,843 - Psest_2076 0.14 -1.2
2,206,123 - Psest_2076 0.49 -0.3
2,206,244 + Psest_2076 0.64 +0.0
2,206,245 - Psest_2076 0.64 -0.4
2,206,302 + Psest_2076 0.71 +0.6
2,206,302 + Psest_2076 0.71 -0.3
2,206,303 - Psest_2076 0.71 -0.7
2,206,303 - Psest_2076 0.71 +0.0
2,206,303 - Psest_2076 0.71 -0.6
2,206,303 - Psest_2076 0.71 +0.4
2,206,405 - Psest_2076 0.84 -2.0
2,206,406 + Psest_2076 0.84 -1.5
2,206,406 + Psest_2076 0.84 -0.4
2,206,407 - Psest_2076 0.84 +0.1
2,206,440 + Psest_2076 0.88 +0.2
2,206,440 + Psest_2076 0.88 -0.0
2,206,441 - Psest_2076 0.88 -0.4
2,206,505 + +0.3
2,206,505 + +0.7
2,206,506 - -0.5
2,206,572 - -0.3
2,206,590 + -0.1
2,206,590 + -2.2
2,206,590 + +0.9
2,206,590 + -1.2
2,206,591 - -1.3
2,206,591 - +0.7
2,206,607 + -0.8
2,206,608 - +0.1
2,206,678 - +0.1
2,206,858 + Psest_2077 0.17 +0.7
2,206,858 + Psest_2077 0.17 +1.3
2,206,858 + Psest_2077 0.17 -0.9
2,206,859 - Psest_2077 0.17 +0.3
2,206,859 - Psest_2077 0.17 -0.7
2,206,859 - Psest_2077 0.17 -1.1
2,207,080 + Psest_2077 0.30 -0.9
2,207,080 + Psest_2077 0.30 -0.2
2,207,080 + Psest_2077 0.30 -0.6
2,207,081 - Psest_2077 0.30 -0.9
2,207,081 - Psest_2077 0.30 -0.9
2,207,081 - Psest_2077 0.30 -0.7
2,207,081 - Psest_2077 0.30 -1.5
2,207,093 + Psest_2077 0.31 +0.4
2,207,324 - Psest_2077 0.44 -1.9
2,207,359 + Psest_2077 0.47 +0.8
2,207,359 + Psest_2077 0.47 +0.5
2,207,360 - Psest_2077 0.47 +1.4
2,207,360 - Psest_2077 0.47 +0.5
2,207,360 - Psest_2077 0.47 -0.5
2,207,360 - Psest_2077 0.47 -0.9
2,207,360 - Psest_2077 0.47 -1.9
2,207,360 - Psest_2077 0.47 +2.0
2,207,360 - Psest_2077 0.47 +0.9
2,207,360 - Psest_2077 0.47 +0.0
2,207,360 - Psest_2077 0.47 -0.2

Or see this region's nucleotide sequence