Experiment: Phosphomycin 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0097 and Psest_0098 are separated by 14 nucleotides Psest_0098 and Psest_0099 are separated by 62 nucleotides Psest_0099 and Psest_0100 are separated by 48 nucleotides
Psest_0097: Psest_0097 - phosphonates metabolism transcriptional regulator PhnF, at 96,653 to 97,381
_0097
Psest_0098: Psest_0098 - phosphonate ABC transporter, permease protein PhnE, at 97,396 to 98,190
_0098
Psest_0099: Psest_0099 - phosphonate ABC transporter, periplasmic phosphonate binding protein, at 98,253 to 99,257
_0099
Psest_0100: Psest_0100 - phosphonate ABC transporter, ATP-binding protein, at 99,306 to 100,136
_0100
Position (kb) 98
99
100 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6 at 97.349 kb on - strand at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.567 kb on + strand, within Psest_0098 at 97.568 kb on - strand, within Psest_0098 at 97.568 kb on - strand, within Psest_0098 at 97.568 kb on - strand, within Psest_0098 at 97.568 kb on - strand, within Psest_0098 at 97.615 kb on + strand, within Psest_0098 at 97.615 kb on + strand, within Psest_0098 at 97.615 kb on + strand, within Psest_0098 at 97.616 kb on - strand, within Psest_0098 at 97.865 kb on + strand, within Psest_0098 at 97.866 kb on - strand, within Psest_0098 at 97.982 kb on + strand, within Psest_0098 at 97.982 kb on + strand, within Psest_0098 at 97.982 kb on + strand, within Psest_0098 at 97.983 kb on - strand, within Psest_0098 at 97.983 kb on - strand, within Psest_0098 at 97.983 kb on - strand, within Psest_0098 at 97.983 kb on - strand, within Psest_0098 at 98.172 kb on + strand at 98.172 kb on + strand at 98.172 kb on + strand at 98.172 kb on + strand at 98.173 kb on - strand at 98.506 kb on + strand, within Psest_0099 at 98.507 kb on - strand, within Psest_0099 at 98.507 kb on - strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.782 kb on + strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.783 kb on - strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.911 kb on + strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.912 kb on - strand, within Psest_0099 at 98.914 kb on + strand, within Psest_0099 at 98.915 kb on - strand, within Psest_0099 at 98.915 kb on - strand, within Psest_0099 at 99.042 kb on + strand, within Psest_0099 at 99.392 kb on - strand, within Psest_0100 at 99.481 kb on + strand, within Psest_0100 at 99.493 kb on + strand, within Psest_0100 at 99.493 kb on + strand, within Psest_0100 at 99.868 kb on + strand, within Psest_0100 at 99.869 kb on - strand, within Psest_0100 at 99.869 kb on - strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.894 kb on + strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 99.895 kb on - strand, within Psest_0100 at 100.185 kb on - strand at 100.196 kb on + strand at 100.196 kb on + strand at 100.221 kb on + strand at 100.221 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml remove 97,349 - +3.6 97,567 + Psest_0098 0.22 +2.9 97,567 + Psest_0098 0.22 +4.5 97,567 + Psest_0098 0.22 +3.9 97,567 + Psest_0098 0.22 +4.4 97,567 + Psest_0098 0.22 +4.8 97,567 + Psest_0098 0.22 +4.5 97,567 + Psest_0098 0.22 +3.5 97,568 - Psest_0098 0.22 +5.1 97,568 - Psest_0098 0.22 +5.6 97,568 - Psest_0098 0.22 +5.9 97,568 - Psest_0098 0.22 +5.9 97,615 + Psest_0098 0.28 +5.2 97,615 + Psest_0098 0.28 -0.7 97,615 + Psest_0098 0.28 +5.5 97,616 - Psest_0098 0.28 +3.6 97,865 + Psest_0098 0.59 +5.0 97,866 - Psest_0098 0.59 +3.0 97,982 + Psest_0098 0.74 +3.0 97,982 + Psest_0098 0.74 +1.9 97,982 + Psest_0098 0.74 +4.7 97,983 - Psest_0098 0.74 +3.7 97,983 - Psest_0098 0.74 +5.3 97,983 - Psest_0098 0.74 +5.9 97,983 - Psest_0098 0.74 +5.0 98,172 + +1.0 98,172 + +3.6 98,172 + +2.5 98,172 + +2.7 98,173 - +4.7 98,506 + Psest_0099 0.25 +2.9 98,507 - Psest_0099 0.25 +4.3 98,507 - Psest_0099 0.25 +4.9 98,782 + Psest_0099 0.53 +2.7 98,782 + Psest_0099 0.53 +3.2 98,782 + Psest_0099 0.53 +2.3 98,782 + Psest_0099 0.53 +3.3 98,782 + Psest_0099 0.53 +2.4 98,782 + Psest_0099 0.53 +4.4 98,783 - Psest_0099 0.53 +3.6 98,783 - Psest_0099 0.53 +4.2 98,783 - Psest_0099 0.53 +4.1 98,783 - Psest_0099 0.53 +5.2 98,783 - Psest_0099 0.53 +3.4 98,783 - Psest_0099 0.53 +4.7 98,783 - Psest_0099 0.53 +3.0 98,911 + Psest_0099 0.65 +3.2 98,911 + Psest_0099 0.65 +1.8 98,911 + Psest_0099 0.65 +2.5 98,911 + Psest_0099 0.65 +1.5 98,912 - Psest_0099 0.66 +4.7 98,912 - Psest_0099 0.66 +4.9 98,912 - Psest_0099 0.66 +4.1 98,912 - Psest_0099 0.66 +3.9 98,914 + Psest_0099 0.66 +0.6 98,915 - Psest_0099 0.66 +4.9 98,915 - Psest_0099 0.66 +4.8 99,042 + Psest_0099 0.79 +1.6 99,392 - Psest_0100 0.10 +3.9 99,481 + Psest_0100 0.21 +3.9 99,493 + Psest_0100 0.23 +5.9 99,493 + Psest_0100 0.23 +5.3 99,868 + Psest_0100 0.68 +2.4 99,869 - Psest_0100 0.68 +5.5 99,869 - Psest_0100 0.68 +4.8 99,894 + Psest_0100 0.71 +2.0 99,894 + Psest_0100 0.71 +1.9 99,894 + Psest_0100 0.71 +0.7 99,894 + Psest_0100 0.71 +1.6 99,895 - Psest_0100 0.71 +3.1 99,895 - Psest_0100 0.71 +4.0 99,895 - Psest_0100 0.71 +4.0 100,185 - +3.8 100,196 + +4.2 100,196 + +3.1 100,221 + +2.6 100,221 + +2.1
Or see this region's nucleotide sequence