Experiment: Phosphomycin 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0550 and Psest_0551 are separated by 100 nucleotides Psest_0551 and Psest_0552 are separated by 82 nucleotides
Psest_0550: Psest_0550 - Predicted permease, DMT superfamily, at 603,733 to 604,605
_0550
Psest_0551: Psest_0551 - PEP phosphonomutase and related enzymes, at 604,706 to 605,569
_0551
Psest_0552: Psest_0552 - conserved hypothetical protein, proteobacterial, at 605,652 to 606,371
_0552
Position (kb) 604
605
606 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 603.757 kb on + strand at 603.758 kb on - strand at 603.774 kb on - strand at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 603.866 kb on - strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.222 kb on + strand, within Psest_0550 at 604.223 kb on - strand, within Psest_0550 at 604.266 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.276 kb on + strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.277 kb on - strand, within Psest_0550 at 604.456 kb on + strand, within Psest_0550 at 604.489 kb on + strand, within Psest_0550 at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.570 kb on + strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.571 kb on - strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.703 kb on + strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.704 kb on - strand at 604.705 kb on + strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.706 kb on - strand at 604.900 kb on + strand, within Psest_0551 at 604.900 kb on + strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.901 kb on - strand, within Psest_0551 at 604.933 kb on + strand, within Psest_0551 at 605.339 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.417 kb on + strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.418 kb on - strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.441 kb on + strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.442 kb on - strand, within Psest_0551 at 605.510 kb on + strand at 605.510 kb on + strand at 605.510 kb on + strand at 605.511 kb on - strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.528 kb on + strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.529 kb on - strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.549 kb on + strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.550 kb on - strand at 605.567 kb on + strand at 605.568 kb on - strand at 605.698 kb on + strand at 605.755 kb on + strand, within Psest_0552 at 605.755 kb on + strand, within Psest_0552 at 605.755 kb on + strand, within Psest_0552 at 605.842 kb on + strand, within Psest_0552 at 605.842 kb on + strand, within Psest_0552 at 605.843 kb on - strand, within Psest_0552 at 605.843 kb on - strand, within Psest_0552 at 605.872 kb on + strand, within Psest_0552 at 605.872 kb on + strand, within Psest_0552 at 605.873 kb on - strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.925 kb on + strand, within Psest_0552 at 605.926 kb on - strand, within Psest_0552 at 605.926 kb on - strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.001 kb on + strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.002 kb on - strand, within Psest_0552 at 606.004 kb on + strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.005 kb on - strand, within Psest_0552 at 606.065 kb on - strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.106 kb on + strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.107 kb on - strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.169 kb on + strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.170 kb on - strand, within Psest_0552 at 606.231 kb on + strand, within Psest_0552 at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.358 kb on + strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.359 kb on - strand at 606.371 kb on + strand at 606.372 kb on - strand at 606.372 kb on - strand at 606.372 kb on - strand at 606.459 kb on + strand at 606.459 kb on + strand at 606.459 kb on + strand at 606.460 kb on - strand at 606.460 kb on - strand at 606.489 kb on - strand at 606.537 kb on - strand at 606.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml remove 603,757 + -0.1 603,758 - +2.3 603,774 - +0.9 603,866 - Psest_0550 0.15 -0.7 603,866 - Psest_0550 0.15 +1.1 603,866 - Psest_0550 0.15 -0.3 604,222 + Psest_0550 0.56 -1.7 604,222 + Psest_0550 0.56 -0.2 604,222 + Psest_0550 0.56 -0.5 604,223 - Psest_0550 0.56 -0.5 604,266 + Psest_0550 0.61 -0.7 604,276 + Psest_0550 0.62 +0.3 604,276 + Psest_0550 0.62 +0.0 604,276 + Psest_0550 0.62 -1.1 604,276 + Psest_0550 0.62 -2.8 604,276 + Psest_0550 0.62 -0.9 604,276 + Psest_0550 0.62 -0.5 604,276 + Psest_0550 0.62 -0.2 604,277 - Psest_0550 0.62 +0.3 604,277 - Psest_0550 0.62 +1.5 604,277 - Psest_0550 0.62 +0.9 604,277 - Psest_0550 0.62 +1.5 604,277 - Psest_0550 0.62 -0.6 604,277 - Psest_0550 0.62 +0.0 604,277 - Psest_0550 0.62 -0.4 604,277 - Psest_0550 0.62 -0.5 604,456 + Psest_0550 0.83 -1.4 604,489 + Psest_0550 0.87 -2.3 604,570 + +1.9 604,570 + -3.3 604,570 + -0.2 604,570 + -1.2 604,570 + -2.2 604,570 + -2.9 604,570 + -0.6 604,570 + -0.3 604,571 - +2.8 604,571 - +0.8 604,571 - -1.2 604,571 - +1.9 604,571 - +0.0 604,571 - +1.2 604,703 + +1.3 604,703 + +0.0 604,703 + +2.0 604,703 + +1.3 604,703 + +3.1 604,703 + +2.5 604,703 + +0.5 604,703 + +2.5 604,703 + +1.4 604,703 + +1.3 604,703 + -0.2 604,703 + -0.9 604,703 + +0.9 604,703 + +0.8 604,704 - +0.2 604,704 - +1.4 604,704 - +2.1 604,704 - -1.1 604,704 - +1.0 604,704 - +2.5 604,704 - +1.2 604,704 - +1.6 604,705 + +0.9 604,706 - +1.9 604,706 - +0.3 604,706 - +4.5 604,900 + Psest_0551 0.22 +0.7 604,900 + Psest_0551 0.22 +1.5 604,901 - Psest_0551 0.23 +2.9 604,901 - Psest_0551 0.23 +0.2 604,933 + Psest_0551 0.26 -0.4 605,339 + Psest_0551 0.73 +0.7 605,417 + Psest_0551 0.82 +1.2 605,417 + Psest_0551 0.82 +1.0 605,418 - Psest_0551 0.82 +0.8 605,418 - Psest_0551 0.82 +1.3 605,418 - Psest_0551 0.82 +1.8 605,441 + Psest_0551 0.85 +1.4 605,441 + Psest_0551 0.85 +1.7 605,441 + Psest_0551 0.85 +2.2 605,441 + Psest_0551 0.85 +1.2 605,442 - Psest_0551 0.85 +1.5 605,442 - Psest_0551 0.85 +2.4 605,510 + +1.7 605,510 + +2.9 605,510 + +0.2 605,511 - +4.0 605,528 + +1.2 605,528 + +1.5 605,528 + +2.3 605,528 + +2.8 605,528 + +2.1 605,529 - +3.6 605,529 - +1.5 605,529 - +1.5 605,529 - +1.1 605,529 - +2.5 605,549 + +1.4 605,549 + +2.0 605,549 + +2.0 605,549 + +2.6 605,549 + +2.2 605,549 + +0.8 605,550 - +1.3 605,550 - +3.2 605,550 - -0.2 605,567 + -0.9 605,568 - +1.5 605,698 + -0.9 605,755 + Psest_0552 0.14 -0.9 605,755 + Psest_0552 0.14 -1.4 605,755 + Psest_0552 0.14 -0.5 605,842 + Psest_0552 0.26 -1.1 605,842 + Psest_0552 0.26 -0.2 605,843 - Psest_0552 0.27 -2.7 605,843 - Psest_0552 0.27 -0.2 605,872 + Psest_0552 0.31 +0.4 605,872 + Psest_0552 0.31 +0.5 605,873 - Psest_0552 0.31 +0.3 605,925 + Psest_0552 0.38 +0.6 605,925 + Psest_0552 0.38 -1.7 605,925 + Psest_0552 0.38 +0.7 605,926 - Psest_0552 0.38 -1.5 605,926 - Psest_0552 0.38 +1.3 606,001 + Psest_0552 0.48 +2.5 606,001 + Psest_0552 0.48 -0.3 606,001 + Psest_0552 0.48 +0.1 606,001 + Psest_0552 0.48 +0.6 606,001 + Psest_0552 0.48 +0.2 606,001 + Psest_0552 0.48 +1.0 606,001 + Psest_0552 0.48 +0.4 606,002 - Psest_0552 0.49 +1.0 606,002 - Psest_0552 0.49 +0.5 606,002 - Psest_0552 0.49 -1.9 606,002 - Psest_0552 0.49 -1.3 606,004 + Psest_0552 0.49 +2.0 606,005 - Psest_0552 0.49 +2.2 606,005 - Psest_0552 0.49 -1.9 606,005 - Psest_0552 0.49 -1.4 606,065 - Psest_0552 0.57 +1.3 606,106 + Psest_0552 0.63 -0.5 606,106 + Psest_0552 0.63 +0.2 606,106 + Psest_0552 0.63 -0.3 606,106 + Psest_0552 0.63 -0.3 606,107 - Psest_0552 0.63 -0.7 606,107 - Psest_0552 0.63 -0.8 606,107 - Psest_0552 0.63 +1.6 606,169 + Psest_0552 0.72 +0.5 606,169 + Psest_0552 0.72 +1.0 606,169 + Psest_0552 0.72 -1.5 606,169 + Psest_0552 0.72 +0.7 606,169 + Psest_0552 0.72 -1.5 606,169 + Psest_0552 0.72 +0.4 606,169 + Psest_0552 0.72 +0.8 606,170 - Psest_0552 0.72 +0.9 606,170 - Psest_0552 0.72 -0.4 606,170 - Psest_0552 0.72 +0.5 606,170 - Psest_0552 0.72 +0.3 606,170 - Psest_0552 0.72 +0.9 606,170 - Psest_0552 0.72 -0.4 606,170 - Psest_0552 0.72 -0.5 606,170 - Psest_0552 0.72 +0.8 606,170 - Psest_0552 0.72 -0.1 606,231 + Psest_0552 0.80 +1.3 606,358 + -0.4 606,358 + +2.3 606,358 + -1.0 606,358 + +0.5 606,358 + +0.2 606,358 + -0.5 606,359 - -1.2 606,359 - -0.8 606,359 - +0.1 606,359 - +0.0 606,371 + +0.3 606,372 - -0.6 606,372 - +0.7 606,372 - -2.1 606,459 + +0.0 606,459 + -0.6 606,459 + +1.6 606,460 - -1.1 606,460 - +1.1 606,489 - +1.8 606,537 - -1.5 606,537 - +1.3
Or see this region's nucleotide sequence