Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3764

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3761 and Psest_3762 are separated by 160 nucleotidesPsest_3762 and Psest_3763 are separated by 188 nucleotidesPsest_3763 and Psest_3764 are separated by 12 nucleotidesPsest_3764 and Psest_3765 are separated by 10 nucleotidesPsest_3765 and Psest_3766 overlap by 4 nucleotides Psest_3761: Psest_3761 - Transcription elongation factor, at 3,930,684 to 3,931,088 _3761 Psest_3762: Psest_3762 - iron donor protein CyaY, at 3,931,249 to 3,931,581 _3762 Psest_3763: Psest_3763 - hypothetical protein, at 3,931,770 to 3,931,910 _3763 Psest_3764: Psest_3764 - diaminopimelate decarboxylase, at 3,931,923 to 3,933,170 _3764 Psest_3765: Psest_3765 - diaminopimelate epimerase, at 3,933,181 to 3,934,011 _3765 Psest_3766: Psest_3766 - Uncharacterized protein conserved in bacteria, at 3,934,008 to 3,934,700 _3766 Position (kb) 3931 3932 3933 3934Strain fitness (log2 ratio) -1 0 1 2at 3931.178 kb on + strandat 3931.179 kb on - strandat 3931.179 kb on - strandat 3931.195 kb on + strandat 3931.250 kb on + strandat 3931.250 kb on + strandat 3931.250 kb on + strandat 3931.516 kb on + strand, within Psest_3762at 3931.516 kb on + strand, within Psest_3762at 3931.516 kb on + strand, within Psest_3762at 3931.516 kb on + strand, within Psest_3762at 3931.516 kb on + strand, within Psest_3762at 3931.517 kb on - strand, within Psest_3762at 3931.517 kb on - strand, within Psest_3762at 3931.517 kb on - strand, within Psest_3762at 3931.517 kb on - strand, within Psest_3762at 3931.517 kb on - strand, within Psest_3762at 3931.517 kb on - strand, within Psest_3762at 3931.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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3,931,178 + +0.2
3,931,179 - +0.2
3,931,179 - -0.0
3,931,195 + +0.8
3,931,250 + -0.0
3,931,250 + +0.5
3,931,250 + +0.2
3,931,516 + Psest_3762 0.80 +1.6
3,931,516 + Psest_3762 0.80 +1.7
3,931,516 + Psest_3762 0.80 +1.0
3,931,516 + Psest_3762 0.80 +0.2
3,931,516 + Psest_3762 0.80 +0.3
3,931,517 - Psest_3762 0.80 +0.9
3,931,517 - Psest_3762 0.80 -0.1
3,931,517 - Psest_3762 0.80 +1.8
3,931,517 - Psest_3762 0.80 +0.7
3,931,517 - Psest_3762 0.80 -0.7
3,931,517 - Psest_3762 0.80 +0.2
3,931,708 - -0.1

Or see this region's nucleotide sequence