Experiment: Phosphomycin 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3761 and Psest_3762 are separated by 160 nucleotides Psest_3762 and Psest_3763 are separated by 188 nucleotides Psest_3763 and Psest_3764 are separated by 12 nucleotides Psest_3764 and Psest_3765 are separated by 10 nucleotides Psest_3765 and Psest_3766 overlap by 4 nucleotides
Psest_3761: Psest_3761 - Transcription elongation factor, at 3,930,684 to 3,931,088
_3761
Psest_3762: Psest_3762 - iron donor protein CyaY, at 3,931,249 to 3,931,581
_3762
Psest_3763: Psest_3763 - hypothetical protein, at 3,931,770 to 3,931,910
_3763
Psest_3764: Psest_3764 - diaminopimelate decarboxylase, at 3,931,923 to 3,933,170
_3764
Psest_3765: Psest_3765 - diaminopimelate epimerase, at 3,933,181 to 3,934,011
_3765
Psest_3766: Psest_3766 - Uncharacterized protein conserved in bacteria, at 3,934,008 to 3,934,700
_3766
Position (kb)
3931
3932
3933
3934 Strain fitness (log2 ratio)
-1
0
1
2 at 3931.178 kb on + strand at 3931.179 kb on - strand at 3931.179 kb on - strand at 3931.195 kb on + strand at 3931.250 kb on + strand at 3931.250 kb on + strand at 3931.250 kb on + strand at 3931.516 kb on + strand, within Psest_3762 at 3931.516 kb on + strand, within Psest_3762 at 3931.516 kb on + strand, within Psest_3762 at 3931.516 kb on + strand, within Psest_3762 at 3931.516 kb on + strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.517 kb on - strand, within Psest_3762 at 3931.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml remove 3,931,178 + +0.2 3,931,179 - +0.2 3,931,179 - -0.0 3,931,195 + +0.8 3,931,250 + -0.0 3,931,250 + +0.5 3,931,250 + +0.2 3,931,516 + Psest_3762 0.80 +1.6 3,931,516 + Psest_3762 0.80 +1.7 3,931,516 + Psest_3762 0.80 +1.0 3,931,516 + Psest_3762 0.80 +0.2 3,931,516 + Psest_3762 0.80 +0.3 3,931,517 - Psest_3762 0.80 +0.9 3,931,517 - Psest_3762 0.80 -0.1 3,931,517 - Psest_3762 0.80 +1.8 3,931,517 - Psest_3762 0.80 +0.7 3,931,517 - Psest_3762 0.80 -0.7 3,931,517 - Psest_3762 0.80 +0.2 3,931,708 - -0.1
Or see this region's nucleotide sequence