Experiment: Phosphomycin 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3713 and Psest_3714 are separated by 23 nucleotides Psest_3714 and Psest_3715 overlap by 4 nucleotides
Psest_3713: Psest_3713 - 3-dehydroquinate synthase, at 3,881,192 to 3,882,295
_3713
Psest_3714: Psest_3714 - Shikimate kinase, at 3,882,319 to 3,882,873
_3714
Psest_3715: Psest_3715 - type IV pilus secretin (or competence protein) PilQ, at 3,882,870 to 3,884,951
_3715
Position (kb)
3882
3883 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3882.311 kb on - strand at 3882.311 kb on - strand at 3882.980 kb on - strand at 3882.980 kb on - strand at 3883.032 kb on - strand at 3883.101 kb on - strand, within Psest_3715 at 3883.101 kb on - strand, within Psest_3715 at 3883.109 kb on + strand, within Psest_3715 at 3883.109 kb on + strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.110 kb on - strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.235 kb on + strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.236 kb on - strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.244 kb on + strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.245 kb on - strand, within Psest_3715 at 3883.392 kb on - strand, within Psest_3715 at 3883.392 kb on - strand, within Psest_3715 at 3883.392 kb on - strand, within Psest_3715 at 3883.404 kb on + strand, within Psest_3715 at 3883.405 kb on - strand, within Psest_3715 at 3883.405 kb on - strand, within Psest_3715 at 3883.405 kb on - strand, within Psest_3715 at 3883.627 kb on - strand, within Psest_3715 at 3883.647 kb on + strand, within Psest_3715 at 3883.648 kb on - strand, within Psest_3715 at 3883.648 kb on - strand, within Psest_3715 at 3883.696 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.706 kb on + strand, within Psest_3715 at 3883.707 kb on - strand, within Psest_3715 at 3883.707 kb on - strand, within Psest_3715 at 3883.707 kb on - strand, within Psest_3715 at 3883.733 kb on + strand, within Psest_3715 at 3883.733 kb on + strand, within Psest_3715 at 3883.734 kb on - strand, within Psest_3715 at 3883.763 kb on + strand, within Psest_3715 at 3883.810 kb on + strand, within Psest_3715 at 3883.810 kb on + strand, within Psest_3715 at 3883.811 kb on - strand, within Psest_3715 at 3883.811 kb on - strand, within Psest_3715 at 3883.815 kb on - strand, within Psest_3715
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml remove 3,882,311 - +0.4 3,882,311 - +0.8 3,882,980 - -0.4 3,882,980 - -2.9 3,883,032 - -0.0 3,883,101 - Psest_3715 0.11 -1.1 3,883,101 - Psest_3715 0.11 -0.9 3,883,109 + Psest_3715 0.11 +1.0 3,883,109 + Psest_3715 0.11 -1.3 3,883,110 - Psest_3715 0.12 -2.0 3,883,110 - Psest_3715 0.12 +0.4 3,883,110 - Psest_3715 0.12 +0.9 3,883,110 - Psest_3715 0.12 -1.5 3,883,235 + Psest_3715 0.18 +2.1 3,883,235 + Psest_3715 0.18 -1.1 3,883,235 + Psest_3715 0.18 -3.7 3,883,236 - Psest_3715 0.18 +0.7 3,883,236 - Psest_3715 0.18 -0.0 3,883,236 - Psest_3715 0.18 -1.7 3,883,236 - Psest_3715 0.18 -0.3 3,883,236 - Psest_3715 0.18 +0.7 3,883,244 + Psest_3715 0.18 -0.3 3,883,244 + Psest_3715 0.18 +1.4 3,883,244 + Psest_3715 0.18 +0.5 3,883,245 - Psest_3715 0.18 -0.4 3,883,245 - Psest_3715 0.18 -1.1 3,883,245 - Psest_3715 0.18 +0.3 3,883,245 - Psest_3715 0.18 +0.2 3,883,245 - Psest_3715 0.18 +0.9 3,883,392 - Psest_3715 0.25 +0.2 3,883,392 - Psest_3715 0.25 +0.5 3,883,392 - Psest_3715 0.25 -0.8 3,883,404 + Psest_3715 0.26 +1.4 3,883,405 - Psest_3715 0.26 +0.0 3,883,405 - Psest_3715 0.26 -2.1 3,883,405 - Psest_3715 0.26 -0.4 3,883,627 - Psest_3715 0.36 -0.2 3,883,647 + Psest_3715 0.37 -0.6 3,883,648 - Psest_3715 0.37 -2.0 3,883,648 - Psest_3715 0.37 -0.4 3,883,696 + Psest_3715 0.40 -2.1 3,883,706 + Psest_3715 0.40 +0.3 3,883,706 + Psest_3715 0.40 +0.7 3,883,706 + Psest_3715 0.40 +1.2 3,883,706 + Psest_3715 0.40 +0.5 3,883,706 + Psest_3715 0.40 -0.5 3,883,706 + Psest_3715 0.40 -1.1 3,883,706 + Psest_3715 0.40 -0.4 3,883,706 + Psest_3715 0.40 -1.0 3,883,707 - Psest_3715 0.40 +0.0 3,883,707 - Psest_3715 0.40 +0.6 3,883,707 - Psest_3715 0.40 +0.6 3,883,733 + Psest_3715 0.41 +1.0 3,883,733 + Psest_3715 0.41 -1.5 3,883,734 - Psest_3715 0.41 -0.4 3,883,763 + Psest_3715 0.43 -0.3 3,883,810 + Psest_3715 0.45 -1.4 3,883,810 + Psest_3715 0.45 -0.5 3,883,811 - Psest_3715 0.45 +0.0 3,883,811 - Psest_3715 0.45 +0.4 3,883,815 - Psest_3715 0.45 -0.6
Or see this region's nucleotide sequence