Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3714

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3713 and Psest_3714 are separated by 23 nucleotidesPsest_3714 and Psest_3715 overlap by 4 nucleotides Psest_3713: Psest_3713 - 3-dehydroquinate synthase, at 3,881,192 to 3,882,295 _3713 Psest_3714: Psest_3714 - Shikimate kinase, at 3,882,319 to 3,882,873 _3714 Psest_3715: Psest_3715 - type IV pilus secretin (or competence protein) PilQ, at 3,882,870 to 3,884,951 _3715 Position (kb) 3882 3883Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3882.311 kb on - strandat 3882.311 kb on - strandat 3882.980 kb on - strandat 3882.980 kb on - strandat 3883.032 kb on - strandat 3883.101 kb on - strand, within Psest_3715at 3883.101 kb on - strand, within Psest_3715at 3883.109 kb on + strand, within Psest_3715at 3883.109 kb on + strand, within Psest_3715at 3883.110 kb on - strand, within Psest_3715at 3883.110 kb on - strand, within Psest_3715at 3883.110 kb on - strand, within Psest_3715at 3883.110 kb on - strand, within Psest_3715at 3883.235 kb on + strand, within Psest_3715at 3883.235 kb on + strand, within Psest_3715at 3883.235 kb on + strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.236 kb on - strand, within Psest_3715at 3883.244 kb on + strand, within Psest_3715at 3883.244 kb on + strand, within Psest_3715at 3883.244 kb on + strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.245 kb on - strand, within Psest_3715at 3883.392 kb on - strand, within Psest_3715at 3883.392 kb on - strand, within Psest_3715at 3883.392 kb on - strand, within Psest_3715at 3883.404 kb on + strand, within Psest_3715at 3883.405 kb on - strand, within Psest_3715at 3883.405 kb on - strand, within Psest_3715at 3883.405 kb on - strand, within Psest_3715at 3883.627 kb on - strand, within Psest_3715at 3883.647 kb on + strand, within Psest_3715at 3883.648 kb on - strand, within Psest_3715at 3883.648 kb on - strand, within Psest_3715at 3883.696 kb on + strand, within Psest_3715at 3883.706 kb on + strand, within Psest_3715at 3883.706 kb on + strand, within Psest_3715at 3883.706 kb on + strand, within Psest_3715at 3883.706 kb on + strand, within Psest_3715at 3883.706 kb on + strand, within Psest_3715at 3883.706 kb on + strand, within Psest_3715at 3883.706 kb on + strand, within Psest_3715at 3883.706 kb on + strand, within Psest_3715at 3883.707 kb on - strand, within Psest_3715at 3883.707 kb on - strand, within Psest_3715at 3883.707 kb on - strand, within Psest_3715at 3883.733 kb on + strand, within Psest_3715at 3883.733 kb on + strand, within Psest_3715at 3883.734 kb on - strand, within Psest_3715at 3883.763 kb on + strand, within Psest_3715at 3883.810 kb on + strand, within Psest_3715at 3883.810 kb on + strand, within Psest_3715at 3883.811 kb on - strand, within Psest_3715at 3883.811 kb on - strand, within Psest_3715at 3883.815 kb on - strand, within Psest_3715

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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3,882,311 - +0.4
3,882,311 - +0.8
3,882,980 - -0.4
3,882,980 - -2.9
3,883,032 - -0.0
3,883,101 - Psest_3715 0.11 -1.1
3,883,101 - Psest_3715 0.11 -0.9
3,883,109 + Psest_3715 0.11 +1.0
3,883,109 + Psest_3715 0.11 -1.3
3,883,110 - Psest_3715 0.12 -2.0
3,883,110 - Psest_3715 0.12 +0.4
3,883,110 - Psest_3715 0.12 +0.9
3,883,110 - Psest_3715 0.12 -1.5
3,883,235 + Psest_3715 0.18 +2.1
3,883,235 + Psest_3715 0.18 -1.1
3,883,235 + Psest_3715 0.18 -3.7
3,883,236 - Psest_3715 0.18 +0.7
3,883,236 - Psest_3715 0.18 -0.0
3,883,236 - Psest_3715 0.18 -1.7
3,883,236 - Psest_3715 0.18 -0.3
3,883,236 - Psest_3715 0.18 +0.7
3,883,244 + Psest_3715 0.18 -0.3
3,883,244 + Psest_3715 0.18 +1.4
3,883,244 + Psest_3715 0.18 +0.5
3,883,245 - Psest_3715 0.18 -0.4
3,883,245 - Psest_3715 0.18 -1.1
3,883,245 - Psest_3715 0.18 +0.3
3,883,245 - Psest_3715 0.18 +0.2
3,883,245 - Psest_3715 0.18 +0.9
3,883,392 - Psest_3715 0.25 +0.2
3,883,392 - Psest_3715 0.25 +0.5
3,883,392 - Psest_3715 0.25 -0.8
3,883,404 + Psest_3715 0.26 +1.4
3,883,405 - Psest_3715 0.26 +0.0
3,883,405 - Psest_3715 0.26 -2.1
3,883,405 - Psest_3715 0.26 -0.4
3,883,627 - Psest_3715 0.36 -0.2
3,883,647 + Psest_3715 0.37 -0.6
3,883,648 - Psest_3715 0.37 -2.0
3,883,648 - Psest_3715 0.37 -0.4
3,883,696 + Psest_3715 0.40 -2.1
3,883,706 + Psest_3715 0.40 +0.3
3,883,706 + Psest_3715 0.40 +0.7
3,883,706 + Psest_3715 0.40 +1.2
3,883,706 + Psest_3715 0.40 +0.5
3,883,706 + Psest_3715 0.40 -0.5
3,883,706 + Psest_3715 0.40 -1.1
3,883,706 + Psest_3715 0.40 -0.4
3,883,706 + Psest_3715 0.40 -1.0
3,883,707 - Psest_3715 0.40 +0.0
3,883,707 - Psest_3715 0.40 +0.6
3,883,707 - Psest_3715 0.40 +0.6
3,883,733 + Psest_3715 0.41 +1.0
3,883,733 + Psest_3715 0.41 -1.5
3,883,734 - Psest_3715 0.41 -0.4
3,883,763 + Psest_3715 0.43 -0.3
3,883,810 + Psest_3715 0.45 -1.4
3,883,810 + Psest_3715 0.45 -0.5
3,883,811 - Psest_3715 0.45 +0.0
3,883,811 - Psest_3715 0.45 +0.4
3,883,815 - Psest_3715 0.45 -0.6

Or see this region's nucleotide sequence