Experiment: Phosphomycin 0.012 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_3282 and Psest_3283 are separated by 69 nucleotides Psest_3283 and Psest_3284 are separated by 33 nucleotides Psest_3284 and Psest_3285 overlap by 4 nucleotides Psest_3285 and Psest_3286 are separated by 142 nucleotides
Psest_3282: Psest_3282 - Predicted oxidoreductases (related to aryl-alcohol dehydrogenases), at 3,448,963 to 3,450,000
_3282
Psest_3283: Psest_3283 - Predicted membrane protein, at 3,450,070 to 3,450,747
_3283
Psest_3284: Psest_3284 - Uncharacterized protein conserved in bacteria, at 3,450,781 to 3,450,975
_3284
Psest_3285: Psest_3285 - dephospho-CoA kinase, at 3,450,972 to 3,451,580
_3285
Psest_3286: Psest_3286 - Type II secretory pathway, prepilin signal peptidase PulO and related peptidases, at 3,451,723 to 3,452,592
_3286
Position (kb)
3450
3451 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3449.094 kb on - strand, within Psest_3282 at 3449.094 kb on - strand, within Psest_3282 at 3449.102 kb on + strand, within Psest_3282 at 3449.102 kb on + strand, within Psest_3282 at 3449.102 kb on + strand, within Psest_3282 at 3449.102 kb on + strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.103 kb on - strand, within Psest_3282 at 3449.106 kb on + strand, within Psest_3282 at 3449.107 kb on - strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.146 kb on + strand, within Psest_3282 at 3449.147 kb on - strand, within Psest_3282 at 3449.147 kb on - strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.164 kb on + strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.165 kb on - strand, within Psest_3282 at 3449.166 kb on + strand, within Psest_3282 at 3449.167 kb on - strand, within Psest_3282 at 3449.167 kb on - strand, within Psest_3282 at 3449.167 kb on - strand, within Psest_3282 at 3449.177 kb on - strand, within Psest_3282 at 3449.177 kb on - strand, within Psest_3282 at 3449.177 kb on - strand, within Psest_3282 at 3449.177 kb on - strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.244 kb on + strand, within Psest_3282 at 3449.245 kb on - strand, within Psest_3282 at 3449.245 kb on - strand, within Psest_3282 at 3449.245 kb on - strand, within Psest_3282 at 3449.247 kb on - strand, within Psest_3282 at 3449.247 kb on - strand, within Psest_3282 at 3449.247 kb on - strand, within Psest_3282 at 3449.247 kb on - strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.289 kb on + strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.290 kb on - strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.291 kb on + strand, within Psest_3282 at 3449.292 kb on - strand, within Psest_3282 at 3449.292 kb on - strand, within Psest_3282 at 3449.292 kb on - strand, within Psest_3282 at 3449.347 kb on + strand, within Psest_3282 at 3449.348 kb on - strand, within Psest_3282 at 3449.464 kb on - strand, within Psest_3282 at 3449.464 kb on - strand, within Psest_3282 at 3449.524 kb on + strand, within Psest_3282 at 3449.524 kb on + strand, within Psest_3282 at 3449.524 kb on + strand, within Psest_3282 at 3449.525 kb on - strand, within Psest_3282 at 3449.525 kb on - strand, within Psest_3282 at 3449.525 kb on - strand, within Psest_3282 at 3449.535 kb on - strand, within Psest_3282 at 3449.591 kb on + strand, within Psest_3282 at 3449.591 kb on + strand, within Psest_3282 at 3449.592 kb on - strand, within Psest_3282 at 3449.592 kb on - strand, within Psest_3282 at 3449.693 kb on - strand, within Psest_3282 at 3449.693 kb on - strand, within Psest_3282 at 3449.693 kb on - strand, within Psest_3282 at 3449.693 kb on - strand, within Psest_3282 at 3449.752 kb on + strand, within Psest_3282 at 3449.755 kb on - strand, within Psest_3282 at 3449.789 kb on - strand, within Psest_3282 at 3449.789 kb on - strand, within Psest_3282 at 3449.791 kb on - strand, within Psest_3282 at 3449.791 kb on - strand, within Psest_3282 at 3449.791 kb on - strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.792 kb on + strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.793 kb on - strand, within Psest_3282 at 3449.842 kb on + strand, within Psest_3282 at 3449.842 kb on + strand, within Psest_3282 at 3449.843 kb on - strand, within Psest_3282 at 3449.843 kb on - strand, within Psest_3282 at 3449.843 kb on - strand, within Psest_3282 at 3449.919 kb on + strand at 3449.919 kb on + strand at 3449.920 kb on - strand at 3449.930 kb on + strand at 3449.960 kb on + strand at 3449.960 kb on + strand at 3450.066 kb on - strand at 3450.110 kb on + strand at 3450.110 kb on + strand at 3450.125 kb on - strand at 3450.125 kb on - strand at 3450.125 kb on - strand at 3450.173 kb on + strand, within Psest_3283 at 3450.280 kb on - strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.281 kb on + strand, within Psest_3283 at 3450.282 kb on - strand, within Psest_3283 at 3450.282 kb on - strand, within Psest_3283 at 3450.282 kb on - strand, within Psest_3283 at 3450.297 kb on + strand, within Psest_3283 at 3450.297 kb on + strand, within Psest_3283 at 3450.298 kb on - strand, within Psest_3283 at 3450.298 kb on - strand, within Psest_3283 at 3450.298 kb on - strand, within Psest_3283 at 3450.396 kb on - strand, within Psest_3283 at 3450.479 kb on + strand, within Psest_3283 at 3450.479 kb on + strand, within Psest_3283 at 3450.480 kb on - strand, within Psest_3283 at 3450.491 kb on + strand, within Psest_3283 at 3450.491 kb on + strand, within Psest_3283 at 3450.492 kb on - strand, within Psest_3283 at 3450.558 kb on - strand, within Psest_3283 at 3450.563 kb on + strand, within Psest_3283 at 3450.564 kb on - strand, within Psest_3283 at 3450.614 kb on - strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.615 kb on + strand, within Psest_3283 at 3450.616 kb on - strand, within Psest_3283 at 3450.616 kb on - strand, within Psest_3283 at 3450.616 kb on - strand, within Psest_3283 at 3450.616 kb on - strand, within Psest_3283 at 3450.626 kb on + strand, within Psest_3283 at 3450.627 kb on - strand, within Psest_3283 at 3450.645 kb on + strand, within Psest_3283 at 3450.645 kb on + strand, within Psest_3283 at 3450.935 kb on - strand, within Psest_3284 at 3451.620 kb on + strand at 3451.620 kb on + strand at 3451.620 kb on + strand at 3451.621 kb on - strand at 3451.623 kb on + strand at 3451.624 kb on - strand at 3451.657 kb on + strand at 3451.665 kb on - strand at 3451.685 kb on + strand at 3451.686 kb on - strand at 3451.745 kb on + strand at 3451.745 kb on + strand at 3451.746 kb on - strand at 3451.746 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml remove 3,449,094 - Psest_3282 0.13 -0.0 3,449,094 - Psest_3282 0.13 -1.2 3,449,102 + Psest_3282 0.13 -0.3 3,449,102 + Psest_3282 0.13 -0.6 3,449,102 + Psest_3282 0.13 -1.1 3,449,102 + Psest_3282 0.13 +0.2 3,449,103 - Psest_3282 0.13 -1.6 3,449,103 - Psest_3282 0.13 -1.3 3,449,103 - Psest_3282 0.13 -2.1 3,449,103 - Psest_3282 0.13 +1.2 3,449,103 - Psest_3282 0.13 -0.8 3,449,103 - Psest_3282 0.13 +2.0 3,449,103 - Psest_3282 0.13 -0.7 3,449,103 - Psest_3282 0.13 +0.3 3,449,103 - Psest_3282 0.13 -0.1 3,449,103 - Psest_3282 0.13 +1.7 3,449,103 - Psest_3282 0.13 +1.1 3,449,106 + Psest_3282 0.14 -0.1 3,449,107 - Psest_3282 0.14 +1.9 3,449,146 + Psest_3282 0.18 +1.1 3,449,146 + Psest_3282 0.18 -0.6 3,449,146 + Psest_3282 0.18 +0.6 3,449,146 + Psest_3282 0.18 -0.2 3,449,146 + Psest_3282 0.18 +1.1 3,449,147 - Psest_3282 0.18 -0.2 3,449,147 - Psest_3282 0.18 +0.9 3,449,164 + Psest_3282 0.19 -0.6 3,449,164 + Psest_3282 0.19 +0.1 3,449,164 + Psest_3282 0.19 +1.4 3,449,164 + Psest_3282 0.19 +0.3 3,449,164 + Psest_3282 0.19 +0.6 3,449,164 + Psest_3282 0.19 -1.0 3,449,165 - Psest_3282 0.19 -0.8 3,449,165 - Psest_3282 0.19 +1.5 3,449,165 - Psest_3282 0.19 +1.1 3,449,165 - Psest_3282 0.19 -1.2 3,449,165 - Psest_3282 0.19 -2.4 3,449,165 - Psest_3282 0.19 +1.2 3,449,165 - Psest_3282 0.19 -3.1 3,449,165 - Psest_3282 0.19 -1.5 3,449,165 - Psest_3282 0.19 -1.1 3,449,165 - Psest_3282 0.19 -0.7 3,449,165 - Psest_3282 0.19 -0.1 3,449,166 + Psest_3282 0.20 -0.4 3,449,167 - Psest_3282 0.20 +0.5 3,449,167 - Psest_3282 0.20 -1.1 3,449,167 - Psest_3282 0.20 +0.7 3,449,177 - Psest_3282 0.21 -2.7 3,449,177 - Psest_3282 0.21 -0.7 3,449,177 - Psest_3282 0.21 +1.1 3,449,177 - Psest_3282 0.21 +2.1 3,449,244 + Psest_3282 0.27 +1.5 3,449,244 + Psest_3282 0.27 -1.1 3,449,244 + Psest_3282 0.27 -0.4 3,449,244 + Psest_3282 0.27 +0.3 3,449,244 + Psest_3282 0.27 -0.1 3,449,245 - Psest_3282 0.27 -0.9 3,449,245 - Psest_3282 0.27 +1.8 3,449,245 - Psest_3282 0.27 +0.5 3,449,247 - Psest_3282 0.27 +0.4 3,449,247 - Psest_3282 0.27 +1.4 3,449,247 - Psest_3282 0.27 +1.0 3,449,247 - Psest_3282 0.27 -1.5 3,449,289 + Psest_3282 0.31 +0.1 3,449,289 + Psest_3282 0.31 -0.5 3,449,289 + Psest_3282 0.31 +1.1 3,449,289 + Psest_3282 0.31 -0.4 3,449,289 + Psest_3282 0.31 +0.5 3,449,289 + Psest_3282 0.31 -0.1 3,449,289 + Psest_3282 0.31 -2.1 3,449,289 + Psest_3282 0.31 -1.6 3,449,289 + Psest_3282 0.31 -0.2 3,449,289 + Psest_3282 0.31 -0.9 3,449,289 + Psest_3282 0.31 +3.5 3,449,290 - Psest_3282 0.32 -0.6 3,449,290 - Psest_3282 0.32 -0.4 3,449,290 - Psest_3282 0.32 -0.5 3,449,290 - Psest_3282 0.32 +0.4 3,449,290 - Psest_3282 0.32 +0.3 3,449,290 - Psest_3282 0.32 -0.3 3,449,290 - Psest_3282 0.32 +0.8 3,449,290 - Psest_3282 0.32 -0.1 3,449,290 - Psest_3282 0.32 +1.4 3,449,291 + Psest_3282 0.32 +0.3 3,449,291 + Psest_3282 0.32 +0.7 3,449,291 + Psest_3282 0.32 -0.9 3,449,291 + Psest_3282 0.32 +0.1 3,449,291 + Psest_3282 0.32 +0.7 3,449,291 + Psest_3282 0.32 +0.4 3,449,291 + Psest_3282 0.32 +1.0 3,449,291 + Psest_3282 0.32 -1.2 3,449,291 + Psest_3282 0.32 -1.7 3,449,291 + Psest_3282 0.32 -1.1 3,449,291 + Psest_3282 0.32 +0.5 3,449,291 + Psest_3282 0.32 +0.7 3,449,291 + Psest_3282 0.32 -1.1 3,449,291 + Psest_3282 0.32 +0.5 3,449,292 - Psest_3282 0.32 -0.7 3,449,292 - Psest_3282 0.32 +1.0 3,449,292 - Psest_3282 0.32 -1.9 3,449,347 + Psest_3282 0.37 -1.8 3,449,348 - Psest_3282 0.37 +0.8 3,449,464 - Psest_3282 0.48 +0.6 3,449,464 - Psest_3282 0.48 -0.8 3,449,524 + Psest_3282 0.54 -1.1 3,449,524 + Psest_3282 0.54 +1.7 3,449,524 + Psest_3282 0.54 -0.5 3,449,525 - Psest_3282 0.54 -1.7 3,449,525 - Psest_3282 0.54 +0.6 3,449,525 - Psest_3282 0.54 -1.8 3,449,535 - Psest_3282 0.55 -2.8 3,449,591 + Psest_3282 0.61 -2.9 3,449,591 + Psest_3282 0.61 -1.4 3,449,592 - Psest_3282 0.61 +0.8 3,449,592 - Psest_3282 0.61 +0.1 3,449,693 - Psest_3282 0.70 -0.8 3,449,693 - Psest_3282 0.70 -1.2 3,449,693 - Psest_3282 0.70 -0.4 3,449,693 - Psest_3282 0.70 +1.0 3,449,752 + Psest_3282 0.76 -0.7 3,449,755 - Psest_3282 0.76 +0.8 3,449,789 - Psest_3282 0.80 +0.2 3,449,789 - Psest_3282 0.80 -1.4 3,449,791 - Psest_3282 0.80 +0.0 3,449,791 - Psest_3282 0.80 -1.3 3,449,791 - Psest_3282 0.80 -0.2 3,449,792 + Psest_3282 0.80 -3.3 3,449,792 + Psest_3282 0.80 -1.7 3,449,792 + Psest_3282 0.80 +0.3 3,449,792 + Psest_3282 0.80 +0.3 3,449,792 + Psest_3282 0.80 +0.9 3,449,792 + Psest_3282 0.80 +0.7 3,449,793 - Psest_3282 0.80 -0.1 3,449,793 - Psest_3282 0.80 +0.2 3,449,793 - Psest_3282 0.80 -0.7 3,449,793 - Psest_3282 0.80 +0.3 3,449,793 - Psest_3282 0.80 +0.3 3,449,793 - Psest_3282 0.80 +1.3 3,449,793 - Psest_3282 0.80 -0.2 3,449,793 - Psest_3282 0.80 +2.1 3,449,842 + Psest_3282 0.85 -0.8 3,449,842 + Psest_3282 0.85 +0.8 3,449,843 - Psest_3282 0.85 +0.9 3,449,843 - Psest_3282 0.85 +0.3 3,449,843 - Psest_3282 0.85 +0.3 3,449,919 + -1.5 3,449,919 + +0.7 3,449,920 - -0.7 3,449,930 + -1.3 3,449,960 + +0.5 3,449,960 + -0.3 3,450,066 - +1.5 3,450,110 + -1.2 3,450,110 + -0.2 3,450,125 - +1.2 3,450,125 - +0.9 3,450,125 - -1.9 3,450,173 + Psest_3283 0.15 +2.3 3,450,280 - Psest_3283 0.31 -0.2 3,450,281 + Psest_3283 0.31 +1.5 3,450,281 + Psest_3283 0.31 +2.6 3,450,281 + Psest_3283 0.31 +1.5 3,450,281 + Psest_3283 0.31 +1.8 3,450,281 + Psest_3283 0.31 -0.1 3,450,282 - Psest_3283 0.31 -0.2 3,450,282 - Psest_3283 0.31 -0.3 3,450,282 - Psest_3283 0.31 +1.1 3,450,297 + Psest_3283 0.33 +3.4 3,450,297 + Psest_3283 0.33 -0.4 3,450,298 - Psest_3283 0.34 -1.9 3,450,298 - Psest_3283 0.34 -0.5 3,450,298 - Psest_3283 0.34 -0.4 3,450,396 - Psest_3283 0.48 -1.5 3,450,479 + Psest_3283 0.60 -0.5 3,450,479 + Psest_3283 0.60 +1.1 3,450,480 - Psest_3283 0.60 +0.5 3,450,491 + Psest_3283 0.62 +0.9 3,450,491 + Psest_3283 0.62 +1.6 3,450,492 - Psest_3283 0.62 +0.1 3,450,558 - Psest_3283 0.72 +0.6 3,450,563 + Psest_3283 0.73 -0.8 3,450,564 - Psest_3283 0.73 -0.2 3,450,614 - Psest_3283 0.80 -0.6 3,450,615 + Psest_3283 0.80 +1.7 3,450,615 + Psest_3283 0.80 -1.6 3,450,615 + Psest_3283 0.80 +0.0 3,450,615 + Psest_3283 0.80 +1.0 3,450,615 + Psest_3283 0.80 +0.5 3,450,616 - Psest_3283 0.81 +0.7 3,450,616 - Psest_3283 0.81 +1.1 3,450,616 - Psest_3283 0.81 +1.5 3,450,616 - Psest_3283 0.81 -0.3 3,450,626 + Psest_3283 0.82 +0.3 3,450,627 - Psest_3283 0.82 +1.4 3,450,645 + Psest_3283 0.85 +1.3 3,450,645 + Psest_3283 0.85 +0.7 3,450,935 - Psest_3284 0.79 +2.4 3,451,620 + +0.4 3,451,620 + +1.5 3,451,620 + +0.5 3,451,621 - +0.1 3,451,623 + +0.5 3,451,624 - +0.5 3,451,657 + +1.2 3,451,665 - -0.5 3,451,685 + -0.3 3,451,686 - -1.0 3,451,745 + -0.4 3,451,745 + -0.9 3,451,746 - -0.5 3,451,746 - -0.8
Or see this region's nucleotide sequence