Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2491

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2490 and Psest_2491 overlap by 1 nucleotidesPsest_2491 and Psest_2492 are separated by 194 nucleotides Psest_2490: Psest_2490 - succinyl-CoA synthetase, alpha subunit, at 2,663,210 to 2,664,094 _2490 Psest_2491: Psest_2491 - succinyl-CoA synthetase, beta subunit, at 2,664,094 to 2,665,260 _2491 Psest_2492: Psest_2492 - dihydrolipoamide dehydrogenase, at 2,665,455 to 2,666,891 _2492 Position (kb) 2664 2665 2666Strain fitness (log2 ratio) -2 -1 0 1 2at 2663.397 kb on + strand, within Psest_2490at 2663.397 kb on + strand, within Psest_2490at 2663.397 kb on + strand, within Psest_2490at 2663.398 kb on - strand, within Psest_2490at 2663.619 kb on + strand, within Psest_2490at 2663.620 kb on - strand, within Psest_2490at 2663.620 kb on - strand, within Psest_2490at 2663.620 kb on - strand, within Psest_2490at 2663.620 kb on - strand, within Psest_2490at 2663.666 kb on - strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.880 kb on + strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2663.881 kb on - strand, within Psest_2490at 2664.239 kb on - strand, within Psest_2491at 2664.239 kb on - strand, within Psest_2491at 2664.239 kb on - strand, within Psest_2491at 2664.244 kb on + strand, within Psest_2491at 2664.506 kb on + strand, within Psest_2491at 2664.506 kb on + strand, within Psest_2491at 2664.506 kb on + strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.507 kb on - strand, within Psest_2491at 2664.591 kb on - strand, within Psest_2491at 2664.689 kb on + strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.690 kb on - strand, within Psest_2491at 2664.935 kb on + strand, within Psest_2491at 2665.082 kb on - strand, within Psest_2491at 2665.200 kb on + strandat 2665.236 kb on + strandat 2665.267 kb on + strandat 2665.295 kb on - strandat 2665.358 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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2,663,397 + Psest_2490 0.21 -1.3
2,663,397 + Psest_2490 0.21 +0.1
2,663,397 + Psest_2490 0.21 -0.2
2,663,398 - Psest_2490 0.21 -0.1
2,663,619 + Psest_2490 0.46 +1.0
2,663,620 - Psest_2490 0.46 +0.1
2,663,620 - Psest_2490 0.46 -0.5
2,663,620 - Psest_2490 0.46 -1.5
2,663,620 - Psest_2490 0.46 +1.2
2,663,666 - Psest_2490 0.52 +1.6
2,663,880 + Psest_2490 0.76 -1.0
2,663,880 + Psest_2490 0.76 +0.9
2,663,880 + Psest_2490 0.76 -2.0
2,663,880 + Psest_2490 0.76 +1.7
2,663,880 + Psest_2490 0.76 -0.4
2,663,880 + Psest_2490 0.76 -1.7
2,663,880 + Psest_2490 0.76 +0.1
2,663,881 - Psest_2490 0.76 +2.4
2,663,881 - Psest_2490 0.76 +0.7
2,663,881 - Psest_2490 0.76 +2.6
2,663,881 - Psest_2490 0.76 +1.2
2,663,881 - Psest_2490 0.76 -0.0
2,663,881 - Psest_2490 0.76 +2.1
2,663,881 - Psest_2490 0.76 +1.5
2,663,881 - Psest_2490 0.76 +1.0
2,663,881 - Psest_2490 0.76 +0.4
2,663,881 - Psest_2490 0.76 -0.3
2,663,881 - Psest_2490 0.76 +1.7
2,663,881 - Psest_2490 0.76 -0.5
2,663,881 - Psest_2490 0.76 -0.7
2,663,881 - Psest_2490 0.76 +1.2
2,663,881 - Psest_2490 0.76 +1.8
2,663,881 - Psest_2490 0.76 +0.8
2,663,881 - Psest_2490 0.76 +2.2
2,663,881 - Psest_2490 0.76 -1.2
2,663,881 - Psest_2490 0.76 +0.2
2,663,881 - Psest_2490 0.76 +2.6
2,663,881 - Psest_2490 0.76 -1.0
2,663,881 - Psest_2490 0.76 -1.0
2,663,881 - Psest_2490 0.76 +1.3
2,663,881 - Psest_2490 0.76 -0.8
2,663,881 - Psest_2490 0.76 -0.8
2,663,881 - Psest_2490 0.76 +0.7
2,663,881 - Psest_2490 0.76 +1.0
2,664,239 - Psest_2491 0.12 -2.5
2,664,239 - Psest_2491 0.12 +1.2
2,664,239 - Psest_2491 0.12 +1.5
2,664,244 + Psest_2491 0.13 -1.9
2,664,506 + Psest_2491 0.35 +0.1
2,664,506 + Psest_2491 0.35 +2.0
2,664,506 + Psest_2491 0.35 +0.5
2,664,507 - Psest_2491 0.35 -0.7
2,664,507 - Psest_2491 0.35 -1.2
2,664,507 - Psest_2491 0.35 +1.0
2,664,507 - Psest_2491 0.35 -0.6
2,664,507 - Psest_2491 0.35 +0.9
2,664,591 - Psest_2491 0.43 -2.2
2,664,689 + Psest_2491 0.51 -0.3
2,664,690 - Psest_2491 0.51 +0.4
2,664,690 - Psest_2491 0.51 +0.3
2,664,690 - Psest_2491 0.51 -0.9
2,664,690 - Psest_2491 0.51 +0.4
2,664,935 + Psest_2491 0.72 +1.8
2,665,082 - Psest_2491 0.85 -0.2
2,665,200 + -0.5
2,665,236 + +0.6
2,665,267 + -1.5
2,665,295 - -1.5
2,665,358 - +0.8

Or see this region's nucleotide sequence