Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2366

Experiment: Phosphomycin 0.012 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2364 and Psest_2365 are separated by 2 nucleotidesPsest_2365 and Psest_2366 are separated by 3 nucleotidesPsest_2366 and Psest_2367 are separated by 142 nucleotides Psest_2364: Psest_2364 - ABC-type nitrate/sulfonate/bicarbonate transport system, permease component, at 2,517,923 to 2,518,801 _2364 Psest_2365: Psest_2365 - ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component, at 2,518,804 to 2,519,643 _2365 Psest_2366: Psest_2366 - Homoserine acetyltransferase, at 2,519,647 to 2,520,669 _2366 Psest_2367: Psest_2367 - glutamine synthetase, type III, at 2,520,812 to 2,522,176 _2367 Position (kb) 2519 2520 2521Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.685 kb on + strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2518.686 kb on - strand, within Psest_2364at 2519.431 kb on + strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.432 kb on - strand, within Psest_2365at 2519.660 kb on - strandat 2519.807 kb on + strand, within Psest_2366at 2519.807 kb on + strand, within Psest_2366at 2519.808 kb on - strand, within Psest_2366at 2519.808 kb on - strand, within Psest_2366at 2519.808 kb on - strand, within Psest_2366at 2519.916 kb on + strand, within Psest_2366at 2519.917 kb on - strand, within Psest_2366at 2519.917 kb on - strand, within Psest_2366at 2520.029 kb on + strand, within Psest_2366at 2520.030 kb on - strand, within Psest_2366at 2520.044 kb on + strand, within Psest_2366at 2520.045 kb on - strand, within Psest_2366at 2520.045 kb on - strand, within Psest_2366at 2520.105 kb on - strand, within Psest_2366at 2520.308 kb on + strand, within Psest_2366at 2520.308 kb on + strand, within Psest_2366at 2520.309 kb on - strand, within Psest_2366at 2520.309 kb on - strand, within Psest_2366at 2520.340 kb on + strand, within Psest_2366at 2520.340 kb on + strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.341 kb on - strand, within Psest_2366at 2520.521 kb on + strand, within Psest_2366at 2520.522 kb on - strand, within Psest_2366at 2520.522 kb on - strand, within Psest_2366at 2520.729 kb on + strandat 2520.730 kb on - strandat 2520.745 kb on + strandat 2520.745 kb on + strandat 2520.745 kb on + strandat 2520.745 kb on + strandat 2520.745 kb on + strandat 2520.745 kb on + strandat 2520.745 kb on + strandat 2520.745 kb on + strandat 2520.745 kb on + strandat 2520.746 kb on - strandat 2520.746 kb on - strandat 2520.746 kb on - strandat 2520.746 kb on - strandat 2520.746 kb on - strandat 2520.878 kb on + strandat 2520.879 kb on - strandat 2520.894 kb on - strandat 2520.894 kb on - strandat 2520.975 kb on - strand, within Psest_2367at 2521.104 kb on - strand, within Psest_2367at 2521.182 kb on - strand, within Psest_2367at 2521.418 kb on + strand, within Psest_2367at 2521.419 kb on - strand, within Psest_2367at 2521.419 kb on - strand, within Psest_2367at 2521.419 kb on - strand, within Psest_2367at 2521.553 kb on + strand, within Psest_2367at 2521.553 kb on + strand, within Psest_2367at 2521.554 kb on - strand, within Psest_2367at 2521.554 kb on - strand, within Psest_2367at 2521.554 kb on - strand, within Psest_2367at 2521.620 kb on - strand, within Psest_2367

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Per-strain Table

Position Strand Gene LocusTag Fraction Phosphomycin 0.012 mg/ml
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2,518,685 + Psest_2364 0.87 +0.2
2,518,685 + Psest_2364 0.87 -2.2
2,518,685 + Psest_2364 0.87 -0.1
2,518,685 + Psest_2364 0.87 +2.5
2,518,685 + Psest_2364 0.87 -0.9
2,518,685 + Psest_2364 0.87 +0.3
2,518,686 - Psest_2364 0.87 -0.4
2,518,686 - Psest_2364 0.87 -1.1
2,518,686 - Psest_2364 0.87 +1.1
2,519,431 + Psest_2365 0.75 +0.5
2,519,432 - Psest_2365 0.75 -1.1
2,519,432 - Psest_2365 0.75 +0.3
2,519,432 - Psest_2365 0.75 +0.0
2,519,432 - Psest_2365 0.75 +0.7
2,519,432 - Psest_2365 0.75 -1.0
2,519,660 - -1.2
2,519,807 + Psest_2366 0.16 -0.4
2,519,807 + Psest_2366 0.16 +0.3
2,519,808 - Psest_2366 0.16 -1.4
2,519,808 - Psest_2366 0.16 -0.5
2,519,808 - Psest_2366 0.16 -0.4
2,519,916 + Psest_2366 0.26 +0.2
2,519,917 - Psest_2366 0.26 -1.4
2,519,917 - Psest_2366 0.26 +1.3
2,520,029 + Psest_2366 0.37 +0.8
2,520,030 - Psest_2366 0.37 +0.1
2,520,044 + Psest_2366 0.39 -1.5
2,520,045 - Psest_2366 0.39 -0.0
2,520,045 - Psest_2366 0.39 +1.3
2,520,105 - Psest_2366 0.45 -0.5
2,520,308 + Psest_2366 0.65 +0.6
2,520,308 + Psest_2366 0.65 -1.2
2,520,309 - Psest_2366 0.65 +0.2
2,520,309 - Psest_2366 0.65 -0.9
2,520,340 + Psest_2366 0.68 +0.8
2,520,340 + Psest_2366 0.68 +0.6
2,520,341 - Psest_2366 0.68 +1.7
2,520,341 - Psest_2366 0.68 +0.7
2,520,341 - Psest_2366 0.68 +0.1
2,520,341 - Psest_2366 0.68 -0.4
2,520,341 - Psest_2366 0.68 +0.8
2,520,341 - Psest_2366 0.68 -0.3
2,520,341 - Psest_2366 0.68 +1.0
2,520,341 - Psest_2366 0.68 +0.5
2,520,521 + Psest_2366 0.85 +0.9
2,520,522 - Psest_2366 0.86 +0.5
2,520,522 - Psest_2366 0.86 +0.8
2,520,729 + -1.0
2,520,730 - +1.1
2,520,745 + -0.3
2,520,745 + +1.0
2,520,745 + -1.3
2,520,745 + +0.5
2,520,745 + +1.8
2,520,745 + +1.7
2,520,745 + -2.5
2,520,745 + +0.9
2,520,745 + +0.7
2,520,746 - -0.3
2,520,746 - -0.2
2,520,746 - -2.3
2,520,746 - +1.2
2,520,746 - -0.4
2,520,878 + +1.6
2,520,879 - +0.3
2,520,894 - -1.9
2,520,894 - +1.3
2,520,975 - Psest_2367 0.12 +2.0
2,521,104 - Psest_2367 0.21 -0.2
2,521,182 - Psest_2367 0.27 +0.8
2,521,418 + Psest_2367 0.44 +2.8
2,521,419 - Psest_2367 0.44 -0.0
2,521,419 - Psest_2367 0.44 +0.5
2,521,419 - Psest_2367 0.44 -1.3
2,521,553 + Psest_2367 0.54 -1.9
2,521,553 + Psest_2367 0.54 +0.7
2,521,554 - Psest_2367 0.54 -1.2
2,521,554 - Psest_2367 0.54 -1.3
2,521,554 - Psest_2367 0.54 +0.4
2,521,620 - Psest_2367 0.59 +0.2

Or see this region's nucleotide sequence